TCONS_00069774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069774
Unique NameTCONS_00069774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069774 ID=TCONS_00069774|Name=TCONS_00069774|organism=Clytia hemisphaerica|type=transcript|length=411bp
NTAGAAAGCAGGAGCAATCGTTCTGCAACAACTTGGTGTTTTGCCCATGC
TGACTTTGACTTTCGATTTTTCGAGGAAACGACACAATTTGCAAGATGCT
TTGACCTTCTTTGCAACTTCGCGTCCTTCAATGATGAATGCCTTCTGGGA
TGCATAGCGTAACGTAGCTTCGATCCCGGAATGTTTGACGACTTTGTTGT
GCCAGTGAACGTCACTCAGGACGGCGTAGGCGATAGGTGAATGTTTGCTG
ATGATTGGAACGCAGAAGGTCGTTTGATGTAGATCTTTCATCACTTTCGT
CATCGGAGTGATCACGTTGATTTCGTNgcacaaagaaaaaatgacacATG
AACTCGCAAGAAAATAGCACACTGAGAATTCaacagaaaaagaaatattg
ataaaaccaTG
Run BLAST on NCBI

protein sequence of TCONS_00069774-protein

>TCONS_00069774-protein ID=TCONS_00069774-protein|Name=TCONS_00069774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
HGFINISFSVEFSVCYFLASSCVIFSLCXEINVITPMTKVMKDLHQTTFC
VPIISKHSPIAYAVLSDVHWHNKVVKHSGIEATLRYASQKAFIIEGREVA
KKVKASCKLCRFLEKSKVKVSMGKTPSCCRTIAPAFX
Run BLAST on NCBI

transcript from alignment at scaffold_507:21952..22362

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069774 ID=TCONS_00069774|Name=TCONS_00069774|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at scaffold_507:21952..22362 (Clytia hemisphaerica)
CAtggttttatcaatatttctttttctgttGAATTCTCAGTGTGCTATTT
TCTTGCGAGTTCATgtgtcattttttctttgtgcNACGAAATCAACGTGA
TCACTCCGATGACGAAAGTGATGAAAGATCTACATCAAACGACCTTCTGC
GTTCCAATCATCAGCAAACATTCACCTATCGCCTACGCCGTCCTGAGTGA
CGTTCACTGGCACAACAAAGTCGTCAAACATTCCGGGATCGAAGCTACGT
TACGCTATGCATCCCAGAAGGCATTCATCATTGAAGGACGCGAAGTTGCA
AAGAAGGTCAAAGCATCTTGCAAATTGTGTCGTTTCCTCGAAAAATCGAA
AGTCAAAGTCAGCATGGGCAAAACACCAAGTTGTTGCAGAACGATTGCTC
CTGCTTTCTAN

Coding sequence (CDS) from alignment at scaffold_507:21952..22362

>TCONS_00069774 ID=TCONS_00069774|Name=TCONS_00069774|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_507:21952..22362 (Clytia hemisphaerica)
CAtggttttatcaatatttctttttctgttGAATTCTCAGTGTGCTATTT
TCTTGCGAGTTCATgtgtcattttttctttgtgcNACGAAATCAACGTGA
TCACTCCGATGACGAAAGTGATGAAAGATCTACATCAAACGACCTTCTGC
GTTCCAATCATCAGCAAACATTCACCTATCGCCTACGCCGTCCTGAGTGA
CGTTCACTGGCACAACAAAGTCGTCAAACATTCCGGGATCGAAGCTACGT
TACGCTATGCATCCCAGAAGGCATTCATCATTGAAGGACGCGAAGTTGCA
AAGAAGGTCAAAGCATCTTGCAAATTGTGTCGTTTCCTCGAAAAATCGAA
AGTCAAAGTCAGCATGGGCAAAACACCAAGTTGTTGCAGAACGATTGCTC
CTGCTTTCTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043448XLOC_043448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069774-exon-scaffold_507-1491911889:21952..22362TCONS_00069774-exon-scaffold_507-1491911889:21952..22362Clytia hemisphaericaexon
TCONS_00069774-exon-scaffold_507-1510915933:21952..22362TCONS_00069774-exon-scaffold_507-1510915933:21952..22362Clytia hemisphaericaexon
TCONS_00069774-exon-scaffold_507-1575043694:21952..22362TCONS_00069774-exon-scaffold_507-1575043694:21952..22362Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069774-proteinTCONS_00069774-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:21952..22362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93623	2.09366	2.28503	0.664029	2.25697	1.70965	0.440131	1.98152	0.410724	1.82431	1.05254	0.684906	0.924849	0.718112	0.0997299	0.365888	0	0.331039	0	0.488961	0	0	0.913763	0.405405	0.717815	1.57792	0	0.428089	0.389877	0.660732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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