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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=transcript|length=1053bp
GTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATTTA
TTTCGACATTGATTTCCAAAGATCCTCAACTGTCACCTCAAAAATCAGGA
TCATGAAGTCCAAAAAGTATGATCTTGGATATTTTAAAAACCTTGTGACG
AAAAAGCTACCCGTTTACCTCCAGGCACTTTCACCAACAAAGAATGGAAA
AATCTTTTTTAATGAGCTTCTGGGCAGTAGTGCTACTCTGCTTCATGAAA
ATTTGCCATTTGACCATTCCGTATTCACTTCTATTTCTGTAAGCGACATA
TTAAACGAAGAGCCAGATGGAACATTTACCGTGAAAGGTCAAATCAAGTG
GATTGGTGAAGCACGTTCTATAATGAGAAATGGTTACAACAAATCTGTGC
GTCATGCGAAATTGGTGGATCAAGCTGGAGATGCAATCAACATATCTATT
TGGGGTGGACTTATCGAGAAAGCTGTCACCATGAAAACTTTCAAGTTCAC
AAAAGTAGCTGTCTCGCACTTTAGAGGAGTTAATTTGACGACCACATGGG
ATTCAGATATAACTGAAGACAGTGATGAGGATGGTGTAAGCTATGCATGG
GAGAACATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATT
AGCTGCCAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAAC
TAGAAAGACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGC
GAACGTTCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAAT
AACCTTTGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATG
TGGTTGTCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGAT
TGTATATTACAGATGGACCAACCCTTACGGAAACTAAATGCTcgtattcc
attgaaaacgaatATAGAATGcattaaaatagaataaaattctaggttca
aaactttgatgaatttctaatTCATTGGGTATCAAAATGTATTTAAATTC
TAG Run BLAST on NCBI protein sequence of TCONS_00069772-protein >TCONS_00069772-protein ID=TCONS_00069772-protein|Name=TCONS_00069772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
VEIGDECTSKSDKKNIYFDIDFQRSSTVTSKIRIMKSKKYDLGYFKNLVT
KKLPVYLQALSPTKNGKIFFNELLGSSATLLHENLPFDHSVFTSISVSDI
LNEEPDGTFTVKGQIKWIGEARSIMRNGYNKSVRHAKLVDQAGDAINISI
WGGLIEKAVTMKTFKFTKVAVSHFRGVNLTTTWDSDITEDSDEDGVSYAW
ENIPINENKSMCCPTVLAAKVEQYFICIFCKKKLERPSNSKISKVSCGPC
ERSMPLKRCKLATICEITFDYAHNQTTLTAFNDVVVNFFGENLNVDQLED
CILQMDQPLRKLNARIPLKTNIECIKIE Run BLAST on NCBI transcript from alignment at scaffold_507:242344..243841- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=transcript|length=1498bp|location=Sequence derived from alignment at scaffold_507:242344..243841- (Clytia hemisphaerica)
GTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATTTA
TTTCGACATTGATTTCCAAAGATCCTCAACTGTCACCTCAAAAATCAGGA
TCATGAAGTCCAAAAAGTATGATCTTGGATATTTTAAAAACCTTGTGACG
AAAAAGCTACCCGTTTACCTCCAGGCACTTTCACCAACAAAGAATGGAAA
AATCTTTTTTAATGAGCTTCTGGGCAGTAGTGCTACTCTGCTTCATGAAA
ATTTGCCATTTGACCATTCCGTATTCACTTCTATTTCTGTAAGCGACATA
TTAAACGAAGAGCCAGATGGAACATTTACCGTGAAAGGTCAAATCAAGTG
GATTGGTGAAGCACGTTCTATAATGAGAAATGGTTACAACAAATCTGTGC
GTCATGCGAAATTGGTGGATCAAGCTGGAGATGCAATCAACATATCTATT
TGGGGTGGACTTATCGAGAAAGCTGTCACCATGAAAACTTTCAAGTTCAC
AAAAGTAGCTGTCTCGCACTTTAGAGGAGTTAATTTGACGACCACATGGG
ATTCAGATATAACTGAAGACAGTGATGAGGATGGTGTAAGCTATGCATGG
GAGAACATTCCTATTAATGAAAACAAATCTATGTGCCCGGGGGGGTACTA
AGGCAAAATGGGTTACGGGGATGATCCGCTGGTCAGGGTACCTTTTTTAA
CCTCCACGAGTCCCTGGTAGGGTCGCAAAAACACGAAAATAGAAAAATCA
GTCCCTCGTCGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAGTAGAAAA
TTTGAGAAAATTTTGGAATTTCAGTCCCATTCAGGGTCTCTTTTTTCGCA
AATTTCGAGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGACAA
CATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATTAGCTG
CCAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAACTAGAA
AGACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGCGAACG
TTCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAATAACCT
TTGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATGTGGTT
GTCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGATTGTAT
ATTACAGATGGACCAACCCTTACGGAAACTAAATGCTCGTATTCCATTGA
AAACGAATATAGAATGCATTAAAATAGAATAAAATTCTAGGTTCAAAACT
TTGATGAATTTCTAATTCATTGGGTATCAAAATGTATTTAAATTCTAG Coding sequence (CDS) from alignment at scaffold_507:242344..243841- >TCONS_00069772 ID=TCONS_00069772|Name=TCONS_00069772|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_507:242344..243841- (Clytia hemisphaerica)
ATTCCTATTAATGAAAACAAATCTATGTGCTGCCCAACTGTATTAGCTGC
CAAAGTTGAGCAGTATTTCATCTGTATATTCTGCAAGAAGAAACTAGAAA
GACCTTCCAATAGCAAGATTTCTAAAGTTTCATGTGGGCCGTGCGAACGT
TCTATGCCCTTAAAAAGGTGCAAACTTGCCACCATCTGCGAAATAACCTT
TGATTATGCACACAACCAAACTACCTTAACAGCCTTTAATGATGTGGTTG
TCAACTTTTTTGGTGAGAATCTAAATGTTGATCAGTTAGAGGATTGTATA
TTACAGATGGACCAACCCTTACGGAAACTAAATGCTCGTATTCCATTGAA
AACGAATATAGAATGCATTAAAATAGAATAAGTGGAGATCGGTGATGAAT
GCACAAGCAAAAGTGATAAGAAGAATATTTATTTCGACATTGATTTCCAA
AGATCCTCAACTGTCACCTCAAAAATCAGGATCATGAAGTCCAAAAAGTA
TGATCTTGGATATTTTAAAAACCTTGTGACGAAAAAGCTACCCGTTTACC
TCCAGGCACTTTCACCAACAAAGAATGGAAAAATCTTTTTTAATGAGCTT
CTGGGCAGTAGTGCTACTCTGCTTCATGAAAATTTGCCATTTGACCATTC
CGTATTCACTTCTATTTCTGTAAGCGACATATTAAACGAAGAGCCAGATG
GAACATTTACCGTGAAAGGTCAAATCAAGTGGATTGGTGAAGCACGTTCT
ATAATGAGAAATGGTTACAACAAATCTGTGCGTCATGCGAAATTGGTGGA
TCAAGCTGGAGATGCAATCAACATATCTATTTGGGGTGGACTTATCGAGA
AAGCTGTCACCATGAAAACTTTCAAGTTCACAAAAGTAGCTGTCTCGCAC
TTTAGAGGAGTTAATTTGACGACCACATGGGATTCAGATATAACTGAAGA
CAGTGATGAGGATGGTGTAAGCTATGCATGGGAGAACATTCCTATTAATG
AAAACAAATCTATGTGCTGCCCAACTGTATTAGCTGCCAAAGTTGAGCAG
TATTTCATCTGTATATTCTGCAAGAAGAAACTAGAAAGACCTTCCAATAG
CAAGATTTCTAAAGTTTCATGTGGGCCGTGCGAACGTTCTATGCCCTTAA
AAAGGTGCAAACTTGCCACCATCTGCGAAATAACCTTTGATTATGCACAC
AACCAAACTACCTTAACAGCCTTTAATGATGTGGTTGTCAACTTTTTTGG
TGAGAATCTAAATGTTGATCAGTTAGAGGATTGTATATTACAGATGGACC
AACCCTTACGGAAACTAAATGCTCGTATTCCATTGAAAACGAATATAGAA
TGCATTAAAATAGAATAAGTGGAGATCGGTGATGAATGCACAAGCAAAAG
TGATAAGAAGAATATTTATTTCGACATTGATTTCCAAAGATCCTCAACTG
TCACCTCAAAAATCAGGATCATGAAGTCCAAAAAGTATGATCTTGGATAT
TTTAAAAACCTTGTGACGAAAAAGCTACCCGTTTACCTCCAGGCACTTTC
ACCAACAAAGAATGGAAAAATCTTTTTTAATGAGCTTCTGGGCAGTAGTG
CTACTCTGCTTCATGAAAATTTGCCATTTGACCATTCCGTATTCACTTCT
ATTTCTGTAAGCGACATATTAAACGAAGAGCCAGATGGAACATTTACCGT
GAAAGGTCAAATCAAGTGGATTGGTGAAGCACGTTCTATAATGAGAAATG
GTTACAACAAATCTGTGCGTCATGCGAAATTGGTGGATCAAGCTGGAGAT
GCAATCAACATATCTATTTGGGGTGGACTTATCGAGAAAGCTGTCACCAT
GAAAACTTTCAAGTTCACAAAAGTAGCTGTCTCGCACTTTAGAGGAGTTA
ATTTGACGACCACATGGGATTCAGATATAACTGAAGACAGTGATGAGGAT
GGTGTAAGCTATGCATGGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069772-exon-scaffold_507-1575043694:243236..243841 | TCONS_00069772-exon-scaffold_507-1575043694:243236..243841 | Clytia hemisphaerica | exon |
| TCONS_00069772-exon-scaffold_507-1575043694:242344..242790 | TCONS_00069772-exon-scaffold_507-1575043694:242344..242790 | Clytia hemisphaerica | exon |
| TCONS_00069772-exon-scaffold_507-1510915933:243236..243841 | TCONS_00069772-exon-scaffold_507-1510915933:243236..243841 | Clytia hemisphaerica | exon |
| TCONS_00069772-exon-scaffold_507-1510915933:242344..242790 | TCONS_00069772-exon-scaffold_507-1510915933:242344..242790 | Clytia hemisphaerica | exon |
| TCONS_00069772-exon-scaffold_507-1491911889:243236..243841 | TCONS_00069772-exon-scaffold_507-1491911889:243236..243841 | Clytia hemisphaerica | exon |
| TCONS_00069772-exon-scaffold_507-1491911889:242344..242790 | TCONS_00069772-exon-scaffold_507-1491911889:242344..242790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_507 | supercontig | scaffold_507:242344..243841 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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