TCONS_00069762 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069762
Unique Name	TCONS_00069762
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1204

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_507:238749..243856+

transcript sequence

>TCONS_00069762 ID=TCONS_00069762|Name=TCONS_00069762|organism=Clytia hemisphaerica|type=transcript|length=1204bp
GCTGAATTGAccaaaaaaagtccaaaaatatgCTTTAAAATAACAAGTCT
TTAATAGTAACAAAAAAAGACCATAAATATGGTTTAAAATAACAAGTCTT
TAATAGTAACAAACTTTCCCTCTCTAAAAGacaataaaacaatgcaatat
GCCATTATCCAAAACAAAGTAATGACATGATTTCATGAGTGAACCTTTAG
ATGTCCTTGGAGTCATCATGATTTTGTAACTTTTGTATAACTCTCCTTTT
GTCGTAGAAAATGTCAACTTGGTCCATCTCTAATATACAATCCTCTAACT
GATCAACATTTAGATTCTCACCAAAAAAGTTGACAACCACATCATTAAAG
GCTGTTAAGGTAGTTTGGTTGTGTGCATAATCAAAGGTTATTTCGCAGAT
GGTGGCAAGTTTGCACCTTTTTAAGGGCATAGAACGTTCGCACGGCCCAC
ATGAAACTTTAGAAATCTTGCTATTGGAAGGTCTTTCTAGTTTCTTCTTG
CAGAATATACAGATGAAATACTGCTCAACTTTGGCAGCTAATACAGTTGG
GCAGCACATAGATTTGTTTTCATTAATAGGAATGTTCTCCCATGCATAGC
TTACACCATCCTCATCACTGTCTTCAGTTATATCTGAATCCCATGTGGTC
GTCAAATTAACTCCTCTAAAGTGCGAGACAGCTACTTTTGTGAACTTGAA
AGTTTTCATGGTGACAGCTTTCTCGATAAGTCCACCCCAAATAGATATGT
TGATTGCATCTCCAGCTTGATCCACCAATTTCGCATGACGCACAGATTTG
TTGTAACCATTTCTCATTATAGAACGTGCTTCACCAATCCACTTGATTTG
ACCTTTCACGGTAAATGTTCCATCTGGCTCTTCGTTTAATATGTCGCTTA
CAGAAATAGAAGTGAATACGGAATGGTCAAATGGCAAATTTTCATGAAGC
AGAGTAGCACTACTGCCCAGAAGCTCATTAAAAAAGATTTTTCCATTCTT
TGTTGGTGAAAGTGCCTGGAGGTAAACGGGTAGCTTTTTCGTCACAAGGT
TTTTAAAATATCCAAGATCATACTTTTTGGACTTCATGATCCTGATTTTT
GAGGTGACAGTTGAGGATCTTTGGAAATCAATGTCGAAATAAATATTCTT
CTTATCACTTTTGCTTGTGCATTCATCACCGATCTCCACCGCGTATCCAA
GAAG

Run BLAST on NCBI

transcript from alignment at scaffold_507:238749..243856+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069762 ID=TCONS_00069762|Name=TCONS_00069762|organism=Clytia hemisphaerica|type=transcript|length=5108bp|location=Sequence derived from alignment at scaffold_507:238749..243856+ (Clytia hemisphaerica)
GCTGAATTGAccaaaaaaagtccaaaaatatgCTTTAAAATAACAAGTCT
TTAATAGTAACAAAAAAAGACCATAAATATGGTTTAAAATAACAAGTCTT
TAATAGTAACAAACTTTCCCTCTCTAAAAGacaataaaacaatgcaatat
GCCATTATCCAAAACAAAGTAATGACATGATTTCATGAGTGAACCTTTAG
ATGTCCTTGGAGTCATCATGATTTTGTAACTTTTGTATAACTCTCCTTTT
GTCGTAGAAAATGTCAACTTGGTCCATCTCTAATATACAATCCTCTAACT
GATCAACATTTAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNCATTTTATTTGTGAGAGCATCTGAATTgcattttattttagtga
atccgtggttcacattaaaaatataattttactacgtttaaaaaagttaa
tggaaatgaatttaattgaaacaacatttgaattgtattttctttgCTCA
AGTTCAACGCAATCTTTTATTATACATTTATATGTAATTTAAAGTCTAGA
ATTTAAATACATTTTGATACCCAATGAattagaaattcatcaaagttttg
aacctagaattttattctattttaatgCATTCTATattcgttttcaatgg
aatacgAGCATTTAGTTTCCGTAAGGGTTGGTCCATCTGTAATATACAAT
CCTCTAACTGATCAACATTTAGATTCTCACCAAAAAAGTTGACAACCACA
TCATTAAAGGCTGTTAAGGTAGTTTGGTTGTGTGCATAATCAAAGGTTAT
TTCGCAGATGGTGGCAAGTTTGCACCTTTTTAAGGGCATAGAACGTTCGC
ACGGCCCACATGAAACTTTAGAAATCTTGCTATTGGAAGGTCTTTCTAGT
TTCTTCTTGCAGAATATACAGATGAAATACTGCTCAACTTTGGCAGCTAA
TACAGTTGGGCAGCACATAGATTTGTTTTCATTAATAGGAATGTTGTCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggactcgaaatttgcgaaa
aaagagaccctgaatgggactgaaattccaaaattttctcaaattttcta
ctttttccccaaattttccaaaaataggcacccgacgagggactgatttt
tctattttcgtgtttttgcgaccctaccagggactcgtggaggttaaaaa
aggtaccctgaccagcggatcatccccgtaacccattttgccttagtacc
cccccgggcacATAGATTTGTTTTCATTAATAGGAATGTTCTCCCATGCA
TAGCTTACACCATCCTCATCACTGTCTTCAGTTATATCTGAATCCCATGT
GGTCGTCAAATTAACTCCTCTAAAGTGCGAGACAGCTACTTTTGTGAACT
TGAAAGTTTTCATGGTGACAGCTTTCTCGATAAGTCCACCCCAAATAGAT
ATGTTGATTGCATCTCCAGCTTGATCCACCAATTTCGCATGACGCACAGA
TTTGTTGTAACCATTTCTCATTATAGAACGTGCTTCACCAATCCACTTGA
TTTGACCTTTCACGGTAAATGTTCCATCTGGCTCTTCGTTTAATATGTCG
CTTACAGAAATAGAAGTGAATACGGAATGGTCAAATGGCAAATTTTCATG
AAGCAGAGTAGCACTACTGCCCAGAAGCTCATTAAAAAAGATTTTTCCAT
TCTTTGTTGGTGAAAGTGCCTGGAGGTAAACGGGTAGCTTTTTCGTCACA
AGGTTTTTAAAATATCCAAGATCATACTTTTTGGACTTCATGATCCTGAT
TTTTGAGGTGACAGTTGAGGATCTTTGGAAATCAATGTCGAAATAAATAT
TCTTCTTATCACTTTTGCTTGTGCATTCATCACCGATCTCCACCGCGTAT
CCAAGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043439	XLOC_043439	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069762-exon-scaffold_507-1491911889:238749..239055	TCONS_00069762-exon-scaffold_507-1491911889:238749..239055	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1510915933:238749..239055	TCONS_00069762-exon-scaffold_507-1510915933:238749..239055	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1575043694:238749..239055	TCONS_00069762-exon-scaffold_507-1575043694:238749..239055	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1491911889:242515..242764	TCONS_00069762-exon-scaffold_507-1491911889:242515..242764	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1510915933:242515..242764	TCONS_00069762-exon-scaffold_507-1510915933:242515..242764	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1575043694:242515..242764	TCONS_00069762-exon-scaffold_507-1575043694:242515..242764	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1491911889:243210..243856	TCONS_00069762-exon-scaffold_507-1491911889:243210..243856	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1510915933:243210..243856	TCONS_00069762-exon-scaffold_507-1510915933:243210..243856	Clytia hemisphaerica	exon
TCONS_00069762-exon-scaffold_507-1575043694:243210..243856	TCONS_00069762-exon-scaffold_507-1575043694:243210..243856	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_507	supercontig	scaffold_507:238749..243856 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91039	2.21045	0.689108	0.355037	25.2299	22.3951	15.3185	16.1849	8.22573	7.42306	4.96507	4.22962	2.03182	1.28771	1.68772	2.56142	3.17345	1.97102	1.63359	2.66093	11.6661	10.1948	3.76917	4.95456	2.55782	6.2238	4.26142	3.99778	1.55789	2.3115

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069762 vs. Swiss-Prot (Human)

BLAST of TCONS_00069762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069762 (transcript) - C. hemisphaerica