TCONS_00069754 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069754
Unique Name	TCONS_00069754
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1802

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_507:84581..91388+
coding sequence from alignment at scaffold_507:84581..91388+

transcript sequence

>TCONS_00069754 ID=TCONS_00069754|Name=TCONS_00069754|organism=Clytia hemisphaerica|type=transcript|length=1802bp
CAAATAACAAGAATGAACAATCTCTGTACTTTGACTTGTatcttttatac
ttttttacaGTTGAGATATGAAAATATTACACGATTTATTATGGTGATGT
TTGTGACGAATTAAACATTGAATATCTACCCAACAAAGTTTACCTGCTGT
CATCATAGTCTGAAAACATGGCTGGAGAATGGATGAAGCCCACCCTGATC
CTTTCATTGTATGGTTTCTTCAAAGAGATGAAGCCATCGGAATCATTCCT
CACACCATACCTCAACAGCACATTTAAAAACATCCCCAAGAAAACCATTT
CTGATGAAATCTACCCTATATCCACATATTCGTATCTCGTCTTCTTATTC
TTAGTACTCATGACCACAGACTTCCTACGTTATAAACCGCTAGTCATCAT
TGAATCCTTAGCTTACCTGGCCACACGTGTTATCTTAGTTTGGGGTCAAG
GTGTTTTGATCATGCAGATTATGCAAATGACTTATGGTCTTGCAAGTGCC
ACTGAAGTTGCTTATTATTCCTACATCTATGCACTTGTAGATCGTGAGCA
TTACCAGAAAGTGTCCAGTTATACTCGACTTGCTGTTTTAGCTGGCAAAG
GTGTTGGTGATTTGAGTGGACAACTTCTGTTATCGACAAATACAGTCAAT
CTATTACAATTGAATTACGTTTCGTTGGCCAGTGTGGCTGTTTCAGTGAT
CGCTGCCTGTTTCTTACCTAAAGTCACAGGTTCTGTATTTGGAACCATGA
AAGAGGAGAAAGGATTCGAACGGTTTGACAACGAGGAAAGGATAGACGAT
GAAGATCAAACCGACCAGATAACTTCCAGCAAAAACATTGTCCCACAAAC
TTGTTCCGTTAGATTGcaacaatattttaaaaatatttggcacacTTTCA
AATCATGTTATTCTGATANAAACTTGTTCCGTTAGATTGcaacaatattt
taaaaatatttggcacatTTTCAAATCATGTTATTctgataaaaaacttt
tacaaTGGTCATGTTTTTGGGCCATCGCAATGTGTGGTGGCCTACAAGTa
gaagattacgtcatgaacctGTGGTCAGCTTTGCAAGGTGATGAGATCAA
GAAAGCTTACAATGGAGCTGTTTTTGCTGCAGGCACCATAACAAGTGCCG
TTTGTGTGTTTCTCTTTTCTATCGCTAAAGTTGATTGGAACTCAGTATCG
GAAGTTGTAATTGGTTGTCTCTCTATCGTGCAAAGCACCATGGTCTTTAA
CATGGCGTGGACCAGTGACGTCACGATCGCTTACGTCATGTATGTGATTT
TCAGAGCATCGTATGCTTTCAGTTTGACTGTTGCAAGTTTTCAGATAGCA
AATCGTTTGACGATGGATGGTTTTGGTTTAGTATTTGGTTGGAACACTCT
GGTCGCTGTTTGTTTGCAAAGTATTTTGACGTTGATCGTTGTTGATAAAA
ATGGATTAGACCTTCCTGAAAGCAAGCAGttCGTGATTTACGGATGTTAT
TTTGTTTTGGTGGCTTTGATCTTCTTTCTGCTTCCATTATGGCACGTCTT
GCAAAAGTCCTTTGCGTGGATGAAAAGTCGATCCGGCCGACAGAAGAACG
ACACATCTAAGAATTCAACTATTTGAATTTGCAGGTTGACTAGATGAAGT
CTTGTCTTTATATTATATATCTTGTATCATCTTAACCCTCCcataatact
tttttttttttgatacctcGGACGATAGCATCAGgtttgaaacctttttt
ttagaattgaaaatttatagaatttaaaaaattattctaatatAAGCGAT
Ct

Run BLAST on NCBI

protein sequence of TCONS_00069754-protein

>TCONS_00069754-protein ID=TCONS_00069754-protein|Name=TCONS_00069754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MAGEWMKPTLILSLYGFFKEMKPSESFLTPYLNSTFKNIPKKTISDEIYP
ISTYSYLVFLFLVLMTTDFLRYKPLVIIESLAYLATRVILVWGQGVLIMQ
IMQMTYGLASATEVAYYSYIYALVDREHYQKVSSYTRLAVLAGKGVGDLS
GQLLLSTNTVNLLQLNYVSLASVAVSVIAACFLPKVTGSVFGTMKEEKGF
ERFDNEERIDDEDQTDQITSSKNIVPQTCSVRLQQYFKNIWHTFKSCYSD
XNLFR

Run BLAST on NCBI

transcript from alignment at scaffold_507:84581..91388+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069754 ID=TCONS_00069754|Name=TCONS_00069754|organism=Clytia hemisphaerica|type=transcript|length=6808bp|location=Sequence derived from alignment at scaffold_507:84581..91388+ (Clytia hemisphaerica)
CAAATAACAAGAATGAACAATCTCTGTACTTTGACTTGTatcttttatac
ttttttacaGTTGAGATATGAAAATATTACACGATTTATTATGGTGATGT
TTGTGACGAATTAAACATTGAATATCTACCCAACAAAGTAAgtatctcat
ttaaaaaatacATCAGGTGCTAGGtttctttatttattttcaagctAGAT
ATTTTTAATGACCTCCGTGTACCATCCCCCATTTTCCCTACAAATCAGTG
ATTTGACTAGAAAATGAAAGTACAGTAGGTAAATTCTAGACGTGAAGTTA
ATTTAAATTCCAGTGGTTTAATTAATTTGATCATACTTAATCTTTTTCTa
catacttacttacttactacacATCTTTCAAATCTATGTTCATTGCAATG
AATTaattacagtatgtggcccccagaACGTCGGtcaaatttctctcaaa
tcgagaggaaaaaaagctttacaaaaatttttgctgcatgcgAAACTTTA
TTTCcgaaaagttctttttcaaaacttcaacaatatttttcaatcgctag
gtagcttttttctgatGGCCCCAAAAATATAGGTTTGCATTATTACCGAt
ttcatattttctttaaaatatgaACATATAAACctcattttttgcaaaat
ctagtCAAACAAATGTATGGTTCCAAGATTTTTTCCGTTACTCATTTTTA
GAGTTTTCAGTTCCATCAATGCTGGTTCTAGgggccccaaaatactggtc
cacctttaagatgctataccTTTCACTCATCTTCTAAAGGTATTATTATT
AGGTATTGagaaatgttttgatgttgatgttTGTTCAGCGTGATATTGGC
TACTAATTTTTATGCGGAGAAATATAAATCTCAAAAGTCCGTTTAAGGCT
TaagctttttgataaaatgaatgGTCCTGAAAAGTGGTACGGCGTAATTT
GACAAGCTCCTTCTTTTAGCCTTGCTTGAACACGAGCTCATTCTCGAGGA
AAACAATAAGAAGACTATGATCAATTgaccattttttcaaatttgggaCG
TAGCTTTTATGTTTTTGTCATAATTTCATGAACTtcaatggggttatttg
ttccTCAGTTTTTGCACCCGCAGGGCGCCTTCATGAGCAACGCGCTCGCG
CGTTTAAAGATACGGTTTGTCGGCTTTTTTGTAGGCCTGGTCGAATCTCG
GAAAATCCATGTCCTGATTATTCAGATCAAATTTACTACGCTTCGATAAT
CTATTTTGAAATGCGAGAGACAAAATCCAAACGATAACCCAGTTTTTGAC
TTGATAACTCAAACCTTGCTTATATTCgtcttttatttcattttccttcG
TAGGTTTTAATCTTTTCTACAGAGTTATTTGTTTAATCGTCGAGTGAatc
gtttgttttgaaatatgtGCTTTAATCTGTTTAATAAACGTTCTTCTGTT
TGCGCTTTTGCTTTAAGCCTTGTGTCCACTCCGGAAAGTTTGCAACGGAT
CGGTATGGATTGGAAcgttttctattgttttaaggATTATCTTCGACCCA
GTTGCCACATATTTTTTTCACGTAAACGGTTGTTCACGTGTTTGGATCAA
AACAGATAAAATAATTCGATTTCTTTTGTATGAAAGTTGTAAACAGAAAG
AATCTACTTTTAAAAAGTCCGAAGTGGAATTTGGAAAACGATTCAGATcg
cttttcttcttctttccaatccgtactagactagtaaactagtcggttat
tacttataataaaatagacgatgttatcgtccgtataatataatattatg
atataacatagtttgtatactataaaacgtaatatgtttcgcggcggata
gatTCTGTGTTTACGGACGATATCAATTTGGCGCTTTTCTCGATTTTATC
TTTGCCCTTACCGACCTTGGAGAAGGGTCGGtgatttttgcggaaaatcc
cTGCAGATTTATAGACGAACTTGgtaagaaaaccaaaacaacacGGGAAG
TAGGGAGTGAACTTTATCCAAaaaatggttgttttctttGAGCAAGATGG
TTCTGGGTCTGGTGAAGAAAAGAAGAATGTTCTTGTATGATAATTTGGAG
GCTGAAGACCTTACATAAACGCATTTGCTGTTTCTTAAGCTTTTTTGACA
ATATTAGTTAGAAGGGATTGTTATATTTCCTCAAGGCCCACAAACAAATT
CTAACttagattttttggaaattttattaatttttataaattttaccaGT
CAGACCCGACTGTTTGTTAACATTTGTTCGAACCGGGCCGGCCGGTCACA
CCGctaaccaaaatccaaaatttacGCTTTTCTACCAAAttgatatagtc
taagacaacagctactcccgtaaaaaattcccgtcttcacgtttgttcct
cttactTAGAtaagatgaaactcgtcttagactatagcatagtctaataa
taaaactgtcaatcaaataatgtaaaaactaattaaatattcagcgcccg
tgagagaaaaggaaaataaccgactagaagctacttccaacgcctttttt
tcttcacctaaaatcgtaaggagagacatacagatttctgtatgtctgac
ccgtgcgggattgcatttatttttctttctgtttattgcgtttttagaaa
tgctcgtttatttatatgttcccatgttcaatgttactatgaaatatcat
ttagtcaaaaaagttggatggaatctcaaaaacctaaaaaatgttgtaaa
attaaacaacgtTTTTTTGAGGGAAGTAGCTTCTAGTCGTTGAAATtcag
aaaagagacgcaacttcaccccttcgattctttttatttggagcttgatt
ttttgtatatgggtctgttttcaacgactagtttactagtctaatcCGTA
CCGATCTGTTGCAAACTTTCCGGTGGAGTGGACACATGGCTTTACGTATT
TAAAAGATTTATTTAGATAAAGAGAATTAAAACTATAAAACTATAAAACT
ATAAAAACTAAATAAGAGACTTTTGCAGTAAAGCTTGTTTTGGTCGCTGA
GCGCTTTTATACTTCCattgaaaattagataaaaagttGCGAAGTGCACC
ACGAGCAttaatgaatgttgaatgttgagcaattttggttttaaaatttc
GATTTCTTTCGAACAACTTCAATTGAAGAATAAAGATCATGGAGGATTTT
GTTCTCAACTGACATTCATTTCTCTTTTACCTGTTCAGACTATATGTGCA
AGAAGtgacatagtgtcctccccccttTGTAAAGTCAGAACCCCGACTTT
GCCCCAGTTGTTGCTTGTCTGAGAGGTGAACGTGCGAGTCGCACATTTAC
CCCAGACCAAGTAGCACTGAAAGATCAAAAGCTGAACGAAGTCTTGTCGT
CTTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatatttt
catttttatttatttatttaaagacAATTAACTTTTGTAACACAAAAGAC
CCGTGCCGGGACTGGCTCCGGTAATAGTATATACcagtttaagaaaaaaa
atttttttaataaaaaagatttctctTTTACTTTACCCTACTTTAGTGTC
TTAGTGGTTGACTTTGCCATTTATATTTTTTCAGTATTCGATGATAGACA
CTGCTAACGTGTTTATGCTATAGTGTCTGATTAAATGCTCTCTGGCACTC
TTTCTGGTTATTCAAGGGCTATGTTCGTGTAACACTTCCTCAAATTCGAT
ACTCCCTTATGAGCGCGGGCGTACCATGGCCTCTGCTATTGGCTagtata
atttttgaaaacgaaggtGATGTCTGTTTCATGAACTCAGTGCCGTcaaa
aatcatcagaaagcaaagttcattCAGAAAGTAGGGTGGGAAAAAGTTCT
ATAAATGTTGATTCTAAGACTCGGAATTGAACCAAAAGAAATGTGCATAC
GCGCAGCTTCCGATTTATATCAAGAAAAGTTTTGCATTTGAAAAGTATTA
TCCTGGCTgtatttcaatctttttccatttttcttacGCATAGGTATTTT
ACCTGTAAGTTTTTTTAATCGATGCCTCATTCCTGGATTGCTTGGAACTA
AGACTATAAAACAATATAGCATTGCTGTTTGTGGAATTTctatatttgct
ttatttctccAGGTTTACCTGCTGTCATCATAGTCTGAAAACATGGCTGG
AGAATGGATGAAGCCCACCCTGATCCTTTCATTGTATGGTTTCTTCAAAG
AGATGAAGCCATCGGAATCATTCCTCACACCATACCTCAACAGCACATTT
AAAAACATCCCCAAGAAAACCATTTCTGATGAAATCTACCCTATATCCAC
ATATTCGTATCTCGTCTTCTTATTCTTAGTACTCATGACCACAGACTTCC
TACGTTATAAACCGCTAGTCATCATTGAATCCTTAGCTTACCTGGCCACA
CGTGTTATCTTAGTTTGGGGTCAAGGTGTTTTGATCATGCAGATTATGCA
AATGACTTATGGTCTTGCAAGTGCCACTGAAGTTGCTTATTATTCCTACA
TCTATGCACTTGTAGATCGTGAGCATTACCAGAAAGTGTCCAGTTATACT
CGACTTGCTGTTTTAGCTGGCAAAGGTGTTGGTGATTTGAGTGGACAACT
TCTGTTATCGACAAATACAGTCAATCTATTACAATTGAATTACGTTTCGT
TGGCCAGTGTGGCTGTTTCAGTGATCGCTGCCTGTTTCTTACCTAAAGTC
ACAGGTTCTGTATTTGGAACCATGAAAGAGGAGAAAGGATTCGAACGGTT
TGACAACGAGGAAAGGATAGACGATGAAGATCAAACCGACCAGATAACTT
CCAGCAAAAACATTGTCCCACAAACTTGTTCCGTTAGATTGcaacaatat
tttaaaaatatttggcacacTTTCAAATCATGTTATTCTGATANAAACTT
GTTCCGTTAGATTGcaacaatattttaaaaatatttggcacatTTTCAAA
TCATGTTATTctgataaaaaacttttacaaTGGTCATGTTTTTGGGCCAT
CGCAATGTGTGGTGGCCTACAAGTagaagattacgtcatgaacctGTGGT
CAGCTTTGCAAGGTGATGAGATCAAGAAAGCTTACAATGGAGCTGTTTTT
GCTGCAGGCACCATAACAAGTGCCGTTTGTGTGTTTCTCTTTTCTATCGC
TAAAGTTGATTGGAACTCAGTATCGGAAGTTGTAATTGGTTGTCTCTCTA
TCGTGCAAAGCACCATGGTCTTTAACATGGCGTGGACCAGTGACGTCACG
ATCGCTTACGTCATGTATGTGATTTTCAGAGCATCGTATGCTTTCAGTTT
GACTGTTGCAAGGTAGGTTGGGTTGTTTTCTTTAGTTGGTATGAATACAG
AAGATGAATGCCAAAACTAATTAGTAGCAATAATTTTGTCGATAAGGTAT
ATGTTTTCAACTTGTCAGTATATTTTTCATGATTAAAGTTTTCAGATAGC
AAATCGTTTGACGATGGATGGTTTTGGTTTAGTATTTGGTTGGAACACTC
TGGTCGCTGTTTGTTTGCAAAGTATTTTGACGTTGATCGTTGTTGATAAA
AATGGATTAGACCTTCCTGAAAGCAAGCAGGTATAGTTTTGTACATGATG
TGTGCATGGATATGATAATTATAGCctaaaccccggggggggggtaacCT
TGATGGCCGACGGAGACGTACCACTGGAGTTTTAAAAgcggaccctgtca
gatatgaatgttttgtgaattttctaatttctactctgaaaattgtacaa
aatcatataaacattttgaaaattcgtaaatttgggaccctctgtcagat
atcttcaaaACTTAAGAGAGAGGCCCTGACCAGCAGTACTTctccgtacc
caattttgcctaagtgctcCCTGGGGCCTCAACACAAGCACTATACAGAG
AGGACACCGAAAAAGTAACGAGCacattaattttcttttgtaaTGTCTGA
CATCTCTTTCTCAATATAGATCTTGCACTTGCAATAGCATTTTTTTTATC
CACAATAATAGAACGAATTATCATATTCTGATCTCTAgagtgattttgat
gaaaacgTTGACTTGCACATTGTCAGTGAAGCCAGTACGTCAATATCCCT
AACGCCACTGGTACCGTAAAAACATTCAATGTCCTAAATTACATAGTGGT
TACTAATAGTTTCGTTTATTCTAATTCTCTCCAAAACTTTACATGTGACC
TTCATTCCTTGTTGGTTTATTGGGAGACAATGCGAGCAAAATNCCTTCAT
tccttgttggtttgttttgaagTTAATATGAGCaaagtttatttaaaaaa
tgtgtgtatatcatttttaaatattttttttctagttCGTGATTTACGGA
TGTTATTTTGTTTTGGTGGCTTTGATCTTCTTTCTGCTTCCATTATGGCA
CGTCTTGCAAAAGTCCTTTGCGTGGATGAAAAGTCGATCCGGCCGACAGA
AGAACGACACATCTAAGAATTCAACTATTTGAATTTGCAGGTTGACTAGA
TGAAGTCTTGTCTTTATATTATATATCTTGTATCATCTTAACCCTCCcat
aatacttttttttttttgatacctcGGACGATAGCATCAGgtttgaaacc
ttttttttagaattgaaaatttatagaatttaaaaaattattctaatatA
AGCGATCt

Coding sequence (CDS) from alignment at scaffold_507:84581..91388+

>TCONS_00069754 ID=TCONS_00069754|Name=TCONS_00069754|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_507:84581..91388+ (Clytia hemisphaerica)
ATGGCTGGAGAATGGATGAAGCCCACCCTGATCCTTTCATTGTATGGTTT
CTTCAAAGAGATGAAGCCATCGGAATCATTCCTCACACCATACCTCAACA
GCACATTTAAAAACATCCCCAAGAAAACCATTTCTGATGAAATCTACCCT
ATATCCACATATTCGTATCTCGTCTTCTTATTCTTAGTACTCATGACCAC
AGACTTCCTACGTTATAAACCGCTAGTCATCATTGAATCCTTAGCTTACC
TGGCCACACGTGTTATCTTAGTTTGGGGTCAAGGTGTTTTGATCATGCAG
ATTATGCAAATGACTTATGGTCTTGCAAGTGCCACTGAAGTTGCTTATTA
TTCCTACATCTATGCACTTGTAGATCGTGAGCATTACCAGAAAGTGTCCA
GTTATACTCGACTTGCTGTTTTAGCTGGCAAAGGTGTTGGTGATTTGAGT
GGACAACTTCTGTTATCGACAAATACAGTCAATCTATTACAATTGAATTA
CGTTTCGTTGGCCAGTGTGGCTGTTTCAGTGATCGCTGCCTGTTTCTTAC
CTAAAGTCACAGGTTCTGTATTTGGAACCATGAAAGAGGAGAAAGGATTC
GAACGGTTTGACAACGAGGAAAGGATAGACGATGAAGATCAAACCGACCA
GATAACTTCCAGCAAAAACATTGTCCCACAAACTTGTTCCGTTAGATTGc
aacaatattttaaaaatatttggcacacTTTCAAATCATGTTATTCTGAT
ANAAACTTGTTCCGTTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043434	XLOC_043434	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069754-exon-scaffold_507-1491911889:84581..84717	TCONS_00069754-exon-scaffold_507-1491911889:84581..84717	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1510915933:84581..84717	TCONS_00069754-exon-scaffold_507-1510915933:84581..84717	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1575043694:84581..84717	TCONS_00069754-exon-scaffold_507-1575043694:84581..84717	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1491911889:88843..90042	TCONS_00069754-exon-scaffold_507-1491911889:88843..90042	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1510915933:88843..90042	TCONS_00069754-exon-scaffold_507-1510915933:88843..90042	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1575043694:88843..90042	TCONS_00069754-exon-scaffold_507-1575043694:88843..90042	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1491911889:90169..90310	TCONS_00069754-exon-scaffold_507-1491911889:90169..90310	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1510915933:90169..90310	TCONS_00069754-exon-scaffold_507-1510915933:90169..90310	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1575043694:90169..90310	TCONS_00069754-exon-scaffold_507-1575043694:90169..90310	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1491911889:91066..91388	TCONS_00069754-exon-scaffold_507-1491911889:91066..91388	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1510915933:91066..91388	TCONS_00069754-exon-scaffold_507-1510915933:91066..91388	Clytia hemisphaerica	exon
TCONS_00069754-exon-scaffold_507-1575043694:91066..91388	TCONS_00069754-exon-scaffold_507-1575043694:91066..91388	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069754-protein	TCONS_00069754-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_507	supercontig	scaffold_507:84581..91388 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29424	1.00114	0.313011	0.690769	0.24027	0	0.171798	0.221827	0.722977	1.66288	5.75821	0.920571	7.09962	6.6995	7.22595	4.38915	4.34511	6.16162	3.40452	2.00805	2.79005	3.0085	2.47854	3.40334	9.56654	9.74546	2.46065	3.40583	2.99445	2.34987

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002666	Folate_carrier
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane

Blast

[Close]

BLAST of TCONS_00069754 vs. Swiss-Prot (Human)
Match: S19A2 (Thiamine transporter 1 OS=Homo sapiens GN=SLC19A2 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.536e-47
Identity = 104/267 (38.95%), Postives = 154/267 (57.68%), Query Frame = 3

Query:  180 WMKPTLILSLYGFFKEMKPSESFLTPYLNSTFKNIPKKTISDEIYPISTYSYLVFLFLVLMTTDFLRYKPLVIIESLAYLATRVILVWGQGVLIMQIMQMTYGLASATEVAYYSYIYALVDREHYQKVSSYTRLAVLAGKGVGDLSGQLLLSTNTVNLLQLNYXXXXXXXXXXXXXCFLPKVTGSVF-----GTMKEEKGFERFDNEERIDDEDQTDQITSSKNI---VPQTCSVRLQQY----------FKNIWHTFKSCYSDXNL 926
            W  PT +L  YGFF  ++PSE FLTPYL    KN+ ++ + +EIYP+ TYSYLV LF V + TD+LRYKP+V+++ L+ + T  +L++ QG+L +Q ++  YG+A+ATE+AYYSYIY++VD   YQKV+SY R A L G  VG + GQ+L+S    +L  LN +SL  V+V+   A FLP    S+F      T +   G  +  N   + D   ++ +   ++I   +P        +            K +W+ F  CYS   L
Sbjct:   30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHIPSTCQRVNGI-KVQNGGIVTDTPASNHLPGWEDIESKIPLNMEEPPVEEPEPKPDRLLVLKVLWNDFLMCYSSRPL 295

HSP 2 Score: 137.117 bits (344), Expect = 1.291e-34
Identity = 81/214 (37.85%), Postives = 122/214 (57.01%), Query Frame = 1

Query:  952 KNIWHIFKSCYSDKKLLQWSCFWAIAMCGGLQVEDYVMNLWSALQGDEIKKAYNGAVFAAGTITSAVCVFLFSIAKVDWNSVSEVVIGCLSIVQSTMVFNMAWTSDVTIAYVMYVIFRASYAFSLTVASFQIANRLTMDGFGLVFGWNTLVAVCLQSILTLIVVDKNGLDLPESKQFVIYGCYFVLVALIFFLLPLWHVLQKSFAWMKSRSGRQ 1593
            K +W+ F  CYS + LL WS +WA++ CG  QV +Y   LW  +        YNG V A  T+  AV VF     K+ W++  E+ +   S++ +  V+ M    ++ + Y  YV+FR  Y   +T+A+FQIA  L+M+ + LVFG NT +A+ LQ++LTLIVVD +GL L  + QF+IY  YF L+A++F       V++K       +S  Q
Sbjct:  280 KVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVMPSRYAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQSSSQ 493

The following BLAST results are available for this feature:

BLAST of TCONS_00069754 vs. Swiss-Prot (Human)

BLAST of TCONS_00069754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S19A2	2.536e-47	38.95	Thiamine transporter 1 OS=Homo sapiens GN=SLC19A2 ...	[more]

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TCONS_00069754 (transcript) - C. hemisphaerica