TCONS_00069736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069736
Unique NameTCONS_00069736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069736 ID=TCONS_00069736|Name=TCONS_00069736|organism=Clytia hemisphaerica|type=transcript|length=339bp
GATCTTTGTATCATTTATTGTAACTATTTGATCATCAAAAATGGTAGCAG
TGAAGTGCCCTTCCAACATATTCTTTCCAGTGTGATTTGTCATGGAAAGC
AACCTGTATGAGATACCATTCAAACTGTTTGCAAAGAACACTTTGAATTC
AAGCTTTTCTTCAATCATCACTCTCTTTACTCCGGTGTTTTCATTATGAT
ATCCTCTCCCGATAGTTATAACAAGTATCGACGGAGCATTCAAGATTGTT
AAGGTTTGGTGAAGCAAAACTGGACATTCACAAATCGAATTACCTCCTGT
GGTTCTGTCGGGATGACCAAAGCAAGATTGGTGAATCAT
Run BLAST on NCBI

protein sequence of TCONS_00069736-protein

>TCONS_00069736-protein ID=TCONS_00069736-protein|Name=TCONS_00069736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MIHQSCFGHPDRTTGGNSICECPVLLHQTLTILNAPSILVITIGRGYHNE
NTGVKRVMIEEKLEFKVFFANSLNGISYRLLSMTNHTGKNMLEGHFTATI
FDDQIVTINDTKI
Run BLAST on NCBI

transcript from alignment at scaffold_506:35479..35817

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069736 ID=TCONS_00069736|Name=TCONS_00069736|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_506:35479..35817 (Clytia hemisphaerica)
ATGATTCACCAATCTTGCTTTGGTCATCCCGACAGAACCACAGGAGGTAA
TTCGATTTGTGAATGTCCAGTTTTGCTTCACCAAACCTTAACAATCTTGA
ATGCTCCGTCGATACTTGTTATAACTATCGGGAGAGGATATCATAATGAA
AACACCGGAGTAAAGAGAGTGATGATTGAAGAAAAGCTTGAATTCAAAGT
GTTCTTTGCAAACAGTTTGAATGGTATCTCATACAGGTTGCTTTCCATGA
CAAATCACACTGGAAAGAATATGTTGGAAGGGCACTTCACTGCTACCATT
TTTGATGATCAAATAGTTACAATAAATGATACAAAGATC

Coding sequence (CDS) from alignment at scaffold_506:35479..35817

>TCONS_00069736 ID=TCONS_00069736|Name=TCONS_00069736|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_506:35479..35817 (Clytia hemisphaerica)
ATGATTCACCAATCTTGCTTTGGTCATCCCGACAGAACCACAGGAGGTAA
TTCGATTTGTGAATGTCCAGTTTTGCTTCACCAAACCTTAACAATCTTGA
ATGCTCCGTCGATACTTGTTATAACTATCGGGAGAGGATATCATAATGAA
AACACCGGAGTAAAGAGAGTGATGATTGAAGAAAAGCTTGAATTCAAAGT
GTTCTTTGCAAACAGTTTGAATGGTATCTCATACAGGTTGCTTTCCATGA
CAAATCACACTGGAAAGAATATGTTGGAAGGGCACTTCACTGCTACCATT
TTTGATGATCAAATAGTTACAATAAATGATACAAAGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043421XLOC_043421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069736-exon-scaffold_506-1491911889:35479..35817TCONS_00069736-exon-scaffold_506-1491911889:35479..35817Clytia hemisphaericaexon
TCONS_00069736-exon-scaffold_506-1510915933:35479..35817TCONS_00069736-exon-scaffold_506-1510915933:35479..35817Clytia hemisphaericaexon
TCONS_00069736-exon-scaffold_506-1575043694:35479..35817TCONS_00069736-exon-scaffold_506-1575043694:35479..35817Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069736-proteinTCONS_00069736-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:35479..35817 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.284856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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