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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=transcript|length=2811bpRun BLAST on NCBI protein sequence of TCONS_00069731-protein >TCONS_00069731-protein ID=TCONS_00069731-protein|Name=TCONS_00069731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp DPNYPSKNLLKSGKWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCYRun BLAST on NCBI transcript from alignment at scaffold_506:468427..475294- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=transcript|length=6868bp|location=Sequence derived from alignment at scaffold_506:468427..475294- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_506:468427..475294- >TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=CDS|length=25443bp|location=Sequence derived from alignment at scaffold_506:468427..475294- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069731 vs. Swiss-Prot (Human)
Match: XRCC1 (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.623e-20 Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 3
Query: 3 DPNYPSKNLLKSG---KWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCYVDILVRHSLKG---NDFKSLIPTFTFMSVPESKSGENKCKVEMFKQDRMMADVRDEKWDVLKIVCRQPYKPNAQYGISFV 383
D + ++NLLK+ KW + ++ V + + IH +DIGN GS +V++LV S G D++ L+ T +FMS ES+SG N +V MF D+++ +++WD +KIVC QPY ++ +G+SFV
Sbjct: 16 DSTHCAENLLKADTYRKWRAAKAG-EKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFV 147 The following BLAST results are available for this feature:
BLAST of TCONS_00069731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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