TCONS_00069729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069729
Unique NameTCONS_00069729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069729 ID=TCONS_00069729|Name=TCONS_00069729|organism=Clytia hemisphaerica|type=transcript|length=263bp
GCTTATCTTACAAGACTTGAATATTTCGCAATGAATCGTCACGAGAACTT
CATTATACACGTCCAGACTGATGATATGAGATCTAGGGATGATGGGTCTA
AAAAGTGCTATACTTTCTCTCGTTGAAGTGTTATGGGGACACTGGACCTT
GTCTTGCTTTGACATCGATGGATGATGAAATGGATGGAAGAATTAAAGAT
TCTACCTACCAGTCTGGAGTAAAGTTTACAAGGAGCcgtaaaacttgttc
gagttaaggagac
Run BLAST on NCBI

transcript from alignment at scaffold_506:450541..455093-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069729 ID=TCONS_00069729|Name=TCONS_00069729|organism=Clytia hemisphaerica|type=transcript|length=4553bp|location=Sequence derived from alignment at scaffold_506:450541..455093- (Clytia hemisphaerica)
GCTTATCTTACAAGACTTGAATATTTCGCAATGAATCGTCACGAGAACTT
CATTATACACGTCCAGACTGATGATATGAGATCTAGGGATGATGGGTCTA
AAAAGTGCTATACTTTCTCTCGTTGAAGTGTTATGGGTACGTAAAACTAT
ACTCATGGTAAAATACTTTTAAGGATTGGGGACACGAGAAGTTTTTTTCG
CGTTGGTGCAATGCAACATGCTCCATCCCACCAACCTGGGCAAAATTGAT
TGAATCAATTTTTCTCCATTGTTCCAGGGACAAAAATCAGATTTCACTTT
TATTGGTAGAAAGAAAAATGGAGTGGAGACACGAGAAAGCGTTTCAGGCT
CTATAGGCTATCTTAGAATGATACATTTTTCTCTCGTTGATCGTTTCAAA
ACTTAGTAAAATAATGAGAAATTAAAATGTTTTTGGTTGATACTTTCAGG
TTCTCATAAAGACTGTCAATTTTTTTAATTTTTCCCAACCTAATCTTTTT
TATAAGAACATTTAAACTTTTTGAAGCCTTCGGATGTTCTTTCTGAGTTT
TAAGCCTAAGAATGTTCTTAACATGTTCTTATTTTCACCATTTTTTTAGT
ATTTTGGTCCATTTTTCTAAGAAATTAGGTGTTTTCGAGTCAGTGAAGCC
TTAAAATGTTGTTAATTTGTTCTTAACAATTTGGCCATCGAAGCCTTATT
TTCTTATATAGTTTGCTCTTATAAAAAAACGTGTAAACAATTATTTAANT
GGCCATCGAAGCCATGTTCTTATATAGTTTGTTCTTATAAAAAAACGTGT
GATCAATTATTTAGAAAGAACAAACTTTGAGAATCTTATCTTGTTTTGGC
AAACGCACTTGCCTAAAGATCTGCTCGTAGAACAAAAAATTAAATTGTCT
TTTCCAGCGGAATCAAAAATATTTTAATGTCCAAAAATTGAACAATTGCC
AGTTTTTATGTTGAAATATCTTGCAATAAATAGTTGTTTCATTGATATAT
GTCACTTGCTAATGATCAGAAACCACTGAAAGAAATTGCAAACTGTCCCA
GCTTATATTTTTTTTCGAGCCTCAGCCGGCGGGGATGGGGAGTACTAGAT
TTACGAGGTTGACGGGTATGTACGAGCCAAAAATCGAAAATCAACCCTTA
GAGAGAGAAAAAATTGATGTTTTAGGATCCTTAGAGAGACTTTTCTCAAA
GCTTTTGTCGATTTTAACTCAATTTTGGTATAAGTTTTTTTAAATCACGG
CCCTTTGAGGCAGGGAAACTTGGATTTTTGTAAACTTTGGACCCTTTCAG
AGAGTGAATTGGTTTTTTGTAACCCTTAGAAAAACTTTCGAAGGTGTAAA
AATGGGACCCTCATGGCTGGCACATATCCGACATCCATTTTGCCTCGATT
TCAACAGCCTGATATTAATTTTGTTTGTGTGAAAAAGAAACAGTTTTAGA
AAGGAATGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTTACTTTCTGA
AAGTGCTCAATAACGTTAAAAATCGACCTATCAAATTAGACAGAAGCAAA
ATTACATGATGCATCAGTATTTTCGTTTCAGTCATTAAAAAGGATAATTA
GCTGCCTAAATGACCTTTTGTTGTATAAAGAAAGGTTGAATTTCAATAAA
AGAAAGAACTCCGTCGAAAAAAGCCAAAAATTCTAGTAAAATTCATAAAA
ATACATCAAATAATGGGTTTCGAGGTATATCCAGGCTTACATAGAGTTTA
TCCAGTCTGGAACCAAAAATCTGACGAAAATCTTGGGAAAAGTAAATTAA
AATGATTTTGATGAATATCTTAAATCCTTTCGACCCATCATTTTCAAAAT
TTATGTATCTAATTATTGTAAAATGCTCTTAATGATGTAAAGCCTATTAC
AACTACCAATTTTAAAATAAAAATTTGATAGGTCGATTTTTAACGTTTTC
GAGCTCTTTCAGAAAGTAACTTTTTTATTCAATTGAGCATAACTTTTGAT
CTAATGAACCGAATTCAATAAATGGCCCATCAAAATTTAAGTTTATTATT
CTTCTTTCAAATGGAATAGGAATGGTTCTTTAAAAGTTTTTAGATTTCGA
GAAAATCAGTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTATCTG
GGGTACTAGGCTTGGCAGATGAGGGATATGTGCGGACGGGACCTCCGAGA
ACCAACCCTTGGAAGAGACCAAATTTTTAGTGAAAAAGTGCCCCTTTTTT
TGAAAGATTTTTTTCGATTTTTGAAAAATGTCTTACCCAGAGACTTTTCT
CTCGCAACCAATAAATTTCCTAAAAATTGTAAATTTTCCGACTCTTAGAG
AGACTGCTTTGAAATTTTCTGAACCTTAGAGAAACTTTGGAAGGGGGGAA
ACCGACTTTTATCGTCCACACATACCCATCACCACAGATCTGTAAAGCCC
GAAGGGCTAGATTTGCGGCCTTGGTCAAAAAGTGAAGCTCATCTTTGGAA
GGATTTCCTACCAGAGTCACGTGACTAAAATATGCAATTTCACCGGTTTG
AGAGATGTGAAATAGCGTTTGCCGCCTACTTTTTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATTAAAATGCTAGATCCTATCCAT
CGGCACGAAATTTAAAAAGTCAAATTTTTGCTTCACTTTTTTTTGCTGGA
GAAAGCTTAAAGTTGCCTATCTAACCCTTCGGGCTTTACAGATATCTGTG
CCCATCACCCATTTTTGTCTAATCCCCCCCCCCTCTGGAAAATCTATCTG
TATCAGCTTGCTAAAATCATGCGCCTACTGAAATACAACCAAGAAAGTTT
CCTCGTGTTTTAAAGATGGATGGATGAAATCTTATGAGTGCACGTTTTTT
ATAAGAACATAATTTATAAATGCATGAGTCTTTGATGGCGAAAATATCAA
GAGCAAGTTAAGAACTTTAGGCTTTACACACTCTAAAACACCCAATTTCT
TTGGAAATTGCACAATAATTCTCATGAAAATGGTGGTGAAAAAAGAAACA
GGTTAACCCTGGACAGAGCTATATCAGCCGGCTTTGATCGGAGNAGAAAG
AGGTTAACCCTGGACAGAGCTATATTAGCCGGCTTTGATCGGAGTTTTTT
TTTTTGAAAGTGGTACCTGCAAAGTGTTAAAAACTAACGTCGCTACATAT
ATCATCAAAAGTATTCGAGGAAATGTATTTACACCGCTATTGAGTAGTGC
TACCATGAGGGTACCAATTTTCCAAAAAACTCCAATCAAAGATTTTGTTT
AGCCGGGGCGCCGGGGCTGAGAAACTTGGTCCAGGGTATATAAAGTTGAG
TAATTGAGACGAGACTGTTCATCTAATGTTTCCAGACCATCTGAAAAGAA
TACGACAAAGAACTATTAAAAAGCGACAAAAATGTACTTTACGCTGTTTA
ACGACTAGCGGTTTACAGAATGATAAATTGCGCATGCGTATAAGTCTGTA
TTTGGGTGAGCTGGAAACATTAGATGAACTAACTCCAGACAGACACGATC
GCTTCCGTATTGCTCCACGGTGAGATTGACTACGTAGGTCAGTAAGCATG
AATTACTACGTTTACTAGAAAGCGGACGGTCGTGACAATTTTTATCTGCT
AATTTTAATGACGCTTTTATTACGACTTTCAGACGTTTAAGGTTGTCTTT
TTTGCAAATGGGAGTTATCTTAATATGTTGAGCATTAAAGACTTTTATCG
GACTAGCTTCAAAATGCCTGTCTCAGAAAATCGAGGCAAAATAAGTTGGA
TCAATTTAGGAGATTAGGATTGACTTTATAATTATAGATATTTTTTTTTT
GACGTGTTGCTTTATACCCGCTGTGTCTTACGATTTAAGCATGGATTAGT
GAGATTACTTTGAATTGCGTATTTGATTGTCGTTTTGGGTCAAATGATAA
TTTACATTACTAAAGGAGAATCCTGCCAGACGCTCCCCCTCCCCTTTTAC
ATGTTTTTTTTTACAAGCATTGTACTTATAAGCACATATTTCTGTAAAGC
CCGAAGGGCTAGATGTCGTACTTTAAGCCATCGCAGGCAAAAAAAAAGAA
TATCGCAAGAAATATAGTTGCTTATTGTATCGAAAATCCACGAACATGAA
CGTAAATCTTGCTGTTTTTTTTACAGGGACACTGGACCTTGTCTTGCTTT
GACATCGATGGATGATGAAATGGATGGAAGAATTAAAGATTCTACCTACC
AGTCTGGAGTAAAGTTTACAAGGAGCCGTAAAACTTGTTCGAGTTAAGGA
GAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043417XLOC_043417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069729-exon-scaffold_506-1575043694:454958..455093TCONS_00069729-exon-scaffold_506-1575043694:454958..455093Clytia hemisphaericaexon
TCONS_00069729-exon-scaffold_506-1575043694:450541..450667TCONS_00069729-exon-scaffold_506-1575043694:450541..450667Clytia hemisphaericaexon
TCONS_00069729-exon-scaffold_506-1510915933:454958..455093TCONS_00069729-exon-scaffold_506-1510915933:454958..455093Clytia hemisphaericaexon
TCONS_00069729-exon-scaffold_506-1510915933:450541..450667TCONS_00069729-exon-scaffold_506-1510915933:450541..450667Clytia hemisphaericaexon
TCONS_00069729-exon-scaffold_506-1491911889:454958..455093TCONS_00069729-exon-scaffold_506-1491911889:454958..455093Clytia hemisphaericaexon
TCONS_00069729-exon-scaffold_506-1491911889:450541..450667TCONS_00069729-exon-scaffold_506-1491911889:450541..450667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:450541..455093 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.846275	1.33748	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.719527	0.654154	0	0	0	0.918332	0	0.709646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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