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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069720 ID=TCONS_00069720|Name=TCONS_00069720|organism=Clytia hemisphaerica|type=transcript|length=2150bp
ATCCACCTAATTTTTAAGCTTCGAAAtaacaaaaattagaaaaaatgatC
CATTGTGGCAGATTCACTACAAGCCAAATCGCAAAAATATTAGGTATTTT
CCAAATCATATGTGCTATCATTATCACAGCTGTTGGTATAGGAATCGTTA
TTAAATTTCGTGAGGTTGACCACACTCTACAAAGTGATAAATCAGTAGCC
GATACTTATATTGATAATCCATGGACAACTCAATATGGTGCAGCAATATG
GATGGGTTTAATTATGGCAATAGCAGGAGCTTTTGGATGTTTTGCTGATA
TTAAACCACACAAGTCTAAATATatGTACGGTACCATGTTTCTAAACATT
GTCGTCGTTTTAGCCGCCATTTTACTTCTCATCTTTTCCCATCAAACAAT
CACGTGGTTTGACACGTGCCAATATCAATATCACGTGTTTCATACTCATG
TTATGCAAGTAAGAGACTGTTCTGAAGACGATAAATCAACTGGCAATACA
ATGTATTGGACTGTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTACAAT
TATGATGCTGGTTTTATTGGGATTCTCAAATTCATCATTGTTGGAAGAAA
TGTGCCAAGGAACGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCA
GATAGTCAGGTCAGCTACAAGACAAAGAACACGCACGAGTTCAATAAAGA
AATGCATGTCAATAATGGTGGGGcacaaaaaaaagaacagtcaaTGAATT
ACAGTCAACCTGCAATTTATTGTTGATATTACTAATGGTAAAGTATGTAT
TGTGAAAGATCGAGTTACAATggtatttttaaaagtgatagGTACGGCGG
TGGATTTTCAAAATCAGCGCATTTGGGACCAGCTTCtttagaaatggaaa
aaaagtcctGGGTACTATATTACAGatgaaaattatatcaaaaattACTT
GTTATTGATTCATAAAATAACATTGTACCtgaagtggataaattttcgca
aaatgaagattttaaattttcgagtcgACAAAATTTCGTGAATTGGCCAA
TTTATcgcctaatttttttctttttttccggATTATTCATCTTTTCACAA
GGACTAAATTTCGcagaaattgtcaaaaatcgtgaaaattctAATCGACG
TAAAATTTACTTCAAGTTACTCAAAGAAAAACACAGAGATAAATGAGTTT
TTACGACTAGCTTGCAATATAAACAGACCTGGATTAATCGTCggtttttt
gcatttttgcgGACATAAGTCCGTCAACTTCGATTTCGTGGACACAAAAA
GCGTAGGAATATAGGAGCACGTTTGTTTCCTTCGGAGAAGTTAGAGAAtg
aaagtctgtctattgattttAACGAGACAAAAACCAGACGACTTCACGTC
TACTTATATTGCGAGCTAGCCGTTTTTACACTCCACTAACTTGAGAGTGT
TtccaaaatttacattgcaTTTGACAATTGTGCAAGTCATTCATTCATAG
ATGAATAGAGGGACTTTATCAAAGACATTCCTTAATTCCTAACGAATCAC
CTTGCCGTGCATGAAGCTCGATTGGGCAACTTGTAATTATTATCCAGTTT
AGCAGCAACCACCTTCCCAAAGCCACACGAAAAATCAACCCtttcttgaa
agtttttgaccattttaagacaaaatatggtcagatttttcaatttttac
acccttggagtgcaatttttctcatgtCTTCATCCTTGCAGTGCACTTCG
AAAAGCTTGGAAAAAGCCGGGACACGCACATACTGTACCTCGTTTACCTT
AATTGCTCCTCCCCCGATCGATATGCACGATCATAATTTGCGTAGGTTTA
TCGTGTTTCAAGATCTGAGAGAATTTTATACAAGGTTGAGACTGGACTTG
CCGTTGCTTGATCAAGCTGTCAACATGAAGAATGTCGTTAATACTAAATa
gacaatttttttaatattttatatataaaaaggTATTCTTTTAGACATAT
TGTAGAGATAATaataatttgtaatttttttttcatacatAGATTTAACA
CTAAAATTCAACtctaaaacttttgaattgTTATTAACTGCTCAcagctc
aaaaatattttcttagaGATGAGATTTCAGTCTGCACTTTTACAATAGCG Run BLAST on NCBI transcript from alignment at scaffold_506:278063..282790- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069720 ID=TCONS_00069720|Name=TCONS_00069720|organism=Clytia hemisphaerica|type=transcript|length=4728bp|location=Sequence derived from alignment at scaffold_506:278063..282790- (Clytia hemisphaerica)
ATCCACCTAATTTTTAAGCTTCGAAATAACAAAAATTAGAAAAAATGATC
CATTGTGGCAGATTCACTACAAGCCAAATCGCAAAAATATTAGGTATTTT
CCAAATCATATGTGCTATCATTATCACAGCTGTTGGTATAGGAATCGTTA
TTAAATTTCGTGAGGTTGACCACACTCTACAAAGTGATAAATCAGTAGCC
GATACTTATATTGATAATCCATGGACAACTCAATATGGTGCAGCAATATG
GATGGGTTTAATTGTAAGTTTACCCATAGTCATTATAAAAAACCCTGGTT
TGGTAATGTAATTATTTTAGCTTTATTGTCAATCTTTCCTTCGTTGTAAA
TAAAAGGCAAGTTGTGATTTGCATACTTTTTTATCACGTTACCATTTTCG
ACTCTTGGGATTGGTTTATTTTATGATCACATGATCAAAAACTATGCAAA
ACAAATCAATTAAAGGTACGCAAGTTCTAACGGTTAACAATAGAAAGAAA
AAAAAGCCTTCCAGACCGGGTTTTTCTATAATGACTATGGTTTACCGTCC
GTTTGTACATACATGTTTTTATTTTATTTTATAAGCATAATGATTATAAG
CATAAACGTCAGGGCTCGGTTTTTTTAGTACCTAAACAATGGCTCTATTG
TTTGAGAACAATAGAATGCTAAGCATAATGTGAGCCTGGCTGATATAGGG
ACAGACACTTGCTTTAAAAAACACACGTACTTGACTGTCTCTAATTCGAT
TTTCAATTTTTTCGATTTTCATCGCATAAGGGAACGTATCGAATAGTAAA
AGTTCCTTTATGGGAGCTTCTGATAAAAGATGACTTTCAATATTATCGAA
AAATCGAGTGTGTTAAATAGTAGAACGTTGAATTAGGGAGCGTCAATTGT
ATAATTCGAACTATACTTTAATAGTATTCCATTTGTAGTTTTTCGATTAC
GATCTTTGGGCGATCTTTCAAAGCCTTAGTGCAAGCTGTTTTTTGAAATC
TGCTCGCACTTATTGCAATAAAACAATAGGGTATTATTCCAGTAAATATT
TTTCTTTCATCCTCCTCTCACCCAAAGTAGAAATTCTGAATAAAGGGGGT
ACATAGTCTACGGTGGGATATTCTTCAGNCGTCAATTGTATAGTTCGAAC
TATACTTTAATAGTATTCCATTTGTAGTTTTTCGATTTACGATTTTTCAA
AGCCTTAGTGCAAGCTGTTTTTTGGAATCTGCTCGCACTTATTGCAATAA
AACAATAGGGTATTATTCCAGTAAATATTTTTCTTTCATGCCTCCTCTCA
CCCAAAGTAGAAATTCTGAATAAAGGGGGTACATAGTCTACGGTGGGATT
ATTCAATCTTTTTGTAACAGACAATCTGCTCCAGAAATATGGGAATTTTC
TATATACCCAGGACAGAAATTTTTGATATCCCAAGGGGTAAATTATCGAA
TGATCAAAAGATTTCTTTTTCTCATAGATGGCAATAGCAGGAGCTTTTGG
ATGTTTTGCTGATATTAAACCACACAAGTCTAAATATGTAAGCAACACTG
TTTTTGATTTCTGAGAATATTCTGTATTGTGATGGCACTATGATATGTGT
ATTGATGCATAGAGATTCGATTCAGCCCTTCGGGCTTATACTTCATCGGT
AATAATGCGTTACGTATATAACATGGTGATAATCGAGTGCCCCCCCTTGG
GGGATATGGCTATTCTTATGAAGTATATTATAATGATAAAACATGAAATT
CCACCATCTCACCGACTTTTAAGCGCGTTAAACTACAATTGGAAAGTAGA
GTTTTAACTCTGAGTTTTAACATGAGACTTAAGCCTTAGGGTCTTAGGAT
CTCAGGATTTAAAAGCTCAAATTTACTCTAATAGGGCTTGAAATATAGCC
TAGAAGCCACCAAACCCCTCCAAAATCGAAATATTCAATGAAAGAGAGTT
GAAGTGCTAAAATTGCCTGAAAAATGAAATTCTCAGAGCATTAAAATACA
CTAAAATCTCGATATATTTCGACCATAATTGTACACAAAAATTGGCTGAA
ATTTGACTTGCGCATACATTTATTAAAACTTTCTAATTATTTCTTTTCAG
ATGTACGGTACCATGTTTCTAAACATTGTCGTCGTTTTAGCCGCCATTTT
ACTTCTCATCTTTTCCCATCAAACAATCACGTGGTTTGACACGTGCCAAT
ATCAATATCACGTGTTTCATACTCATGTTATGCAAGTAAGAGACTGTTCT
GAAGACGATAAATCAACTGGCAATACAATGTATTGGACTGTCTTTGTCGT
TAGTTTGTTGGTGATCCCGATTACAATTATGATGCTGGTTTTATTGGGAT
TCTCAAATTCATCATTGTTGGAAGAAATGTGCCAAGGAACGTGTTTCAGG
AAAATGGTTTATAAAAGTAAAGGACCAGATAGTCAGGTAAATCTTCTTTT
TCTAGTCTTTCTTTTTCCAATAACATTGAGTCATATTTTGGAAATTGGTT
AGCTTTTTGGGTCTATTGTCGGTTTTTTTCAAGTTCACATGACTGTATTT
CCATTGGCTGAGCATTTATACAGGGTTTGTAAATAGTTGTGCCGTACTTG
TTCTCGGAAAGTGCAGGCAATTGCTATTTCCTTTTTGGATTAAGTCTAAA
GACTGATTTTCTCCTTTTATTTGCTTAATCTTATACAATAGTATTTTTGT
CCTTGCAACACAAAAATTTAAGTTCTCGCCTAGTACACTGATCTACCTCC
CTATGTGCTAAAATCCGCATGAAAGAGGAATAGGTTCGAATCTACAAGTG
TGAACGATGTCAAATTTCTGAAGTCATTACATTGATACAAGTTTTTTTTT
CATAAGAACATTCAAAATTTTTGAAGCCTTCAAATATTCTTAACTTGTTT
AGCTTTAAGCCTAAAAATATTCTGAACATGTTCTTATTTTCACCATTTTT
TGAGCAATCTTGTCAATTTCACCCAATTTGAAATTGGGTGTTTTAGAGTC
CGCAAAGCCTTAAAATGTTCTTATCTTGTTCTTAACATTTTGGCCATCGA
AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAACGTCTATGTACTC
ACAGATGCAGATCTTTGTTTCATTCGACCCCTTGTAAACTGGAACACAGT
CCCCTGGAAGAGTTTGGATTGTTAGGTGTATTGAATTTTTTTGAATAGAG
GTTTCTTCAACTTTTTCTTCATTCAAAATTTCAACAGGTCAGCTACAAGA
CAAAGAACACGCACGAGTTCAATAAAGAAATGCATGTCAATAATGGTGGG
GCACAAAAAAAAGAACAGTCAATGAATTACAGTCAACCTGCAATTTATTG
TTGATATTACTAATGGTAAAGTATGTATTGTGAAAGATCGAGTTACAATG
GTATTTTTAAAAGTGATAGGTACGGCGGTGGATTTTCAAAATCAGCGCAT
TTGGGACCAGCTTCTTTAGAAATGGAAAAAAAGTCCTGGGTACTATATTA
CAGATGAAAATTATATCAAAAATTACTTGTTATTGATTCATAAAATAACA
TTGTACCTGAAGTGGATAAATTTTCGCAAAATGAAGATTTTAAATTTTCG
AGTCGACAAAATTTCGTGAATTGGCCAATTTATCGCCTAATTTTTTTCTT
TTTTTCCGGATTATTCATCTTTTCACAAGGACTAAATTTCGCAGAAATTG
TCAAAAATCGTGAAAATTCTAATCGACGTAAAATTTACTTCAAGTTACTC
AAAGAAAAACACAGAGATAAATGAGTTTTTACGACTAGCTTGCAATATAA
ACAGACCTGGATTAATCGTCGGTTTTTTGCATTTTTGCGGACATAAGTCC
GTCAACTTCGATTTCGTGGACACAAAAAGCGTAGGAATATAGGAGCACGT
TTGTTTCCTTCGGAGAAGTTAGAGAATGAAAGTCTGTCTATTGATTTTAA
CGAGACAAAAACCAGACGACTTCACGTCTACTTATATTGCGAGCTAGCCG
TTTTTACACTCCACTAACTTGAGAGTGTTTCCAAAATTTACATTGCATTT
GACAATTGTGCAAGTCATTCATTCATAGATGAATAGAGGGACTTTATCAA
AGACATTCCTTAATTCCTAACGAATCACCTTGCCGTGCATGAAGCTCGAT
TGGGCAACTTGTAATTATTATCCAGTTTAGCAGCAACCACCTTCCCAAAG
CCACACGAAAAATCAACCCTTTCTTGAAAGTTTTTGACCATTTTAAGACA
AAATATGGTCAGATTTTTCAATTTTTACACCCTTGGAGTGCAATTTTTCT
CATGTCTTCATCCTTGCAGTGCACTTCGAAAAGCTTGGAAAAAGCCGGGA
CACGCACATACTGTACCTCGTTTACCTTAATTGCTCCTCCCCCGATCGAT
ATGCACGATCATAATTTGCGTAGGTTTATCGTGTTTCAAGATCTGAGAGA
ATTTTATACAAGGTTGAGACTGGACTTGCCGTTGCTTGATCAAGCTGTCA
ACATGAAGAATGTCGTTAATACTAAATAGACAATTTTTTTAATATTTTAT
ATATAAAAAGGTATTCTTTTAGACATATTGTAGAGATAATAATAATTTGT
AATTTTTTTTTCATACATAGATTTAACACTAAAATTCAACTCTAAAACTT
TTGAATTGTTATTAACTGCTCACAGCTCAAAAATATTTTCTTAGAGATGA
GATTTCAGTCTGCACTTTTACAATAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069720-exon-scaffold_506-1575043694:282528..282790 | TCONS_00069720-exon-scaffold_506-1575043694:282528..282790 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1575043694:281254..281313 | TCONS_00069720-exon-scaffold_506-1575043694:281254..281313 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1575043694:280355..280690 | TCONS_00069720-exon-scaffold_506-1575043694:280355..280690 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1575043694:278063..279553 | TCONS_00069720-exon-scaffold_506-1575043694:278063..279553 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1510915933:282528..282790 | TCONS_00069720-exon-scaffold_506-1510915933:282528..282790 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1510915933:281254..281313 | TCONS_00069720-exon-scaffold_506-1510915933:281254..281313 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1510915933:280355..280690 | TCONS_00069720-exon-scaffold_506-1510915933:280355..280690 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1510915933:278063..279553 | TCONS_00069720-exon-scaffold_506-1510915933:278063..279553 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1491911889:282528..282790 | TCONS_00069720-exon-scaffold_506-1491911889:282528..282790 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1491911889:281254..281313 | TCONS_00069720-exon-scaffold_506-1491911889:281254..281313 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1491911889:280355..280690 | TCONS_00069720-exon-scaffold_506-1491911889:280355..280690 | Clytia hemisphaerica | exon |
| TCONS_00069720-exon-scaffold_506-1491911889:278063..279553 | TCONS_00069720-exon-scaffold_506-1491911889:278063..279553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:278063..282790 - |
Blast
The following BLAST results are available for this feature:
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