TCONS_00069719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069719
Unique NameTCONS_00069719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069719 ID=TCONS_00069719|Name=TCONS_00069719|organism=Clytia hemisphaerica|type=transcript|length=1172bp
AAtaacaaaaattagaaaaaatgatCCATTGTGGCAGATTCACTACAAGC
CAAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATTAT
CACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCACA
CTCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCATGG
ACAACTCAATATGGTGCAGCAATATGGATGGGTTTAATTATGGCAATAGC
AGGAGCTTTTGGATGTTTTGCTGATATTAAACCACACAAGTCTAAATATa
tGTACGGTACCATGTTTCTAAACATTGTCGTCGTTTTAGCCGCCATTTTA
CTTCTCATCTTTTCCCATCAAACAATCACGTGGTTTGACACGTGCCAATA
TCAATATCACGTGTTTCATACTCATGTTATGCAAGTAAGAGACTGTTCTG
AAGACGATAAATCAACTGGCAATACAATGTATTGGACTGTCTTTGTCGTT
AGTTTGTTGGTGATCCCGATTACAATTATGATGCTGGTTTTATTGGGATT
CTCAAATTCATCATTGTTGGAAGAAATGTGCCAAGGAACGTGTTTCAGGA
AAATGGTTTATAAAAGTAAAGGACCAGATAGTCAGGTCAGCTACAAGACA
AAGAACACGCACGAGTTCAATAAAGAAATGCATGTCAATAATGGTGGGGc
acaaaaaaaagaacagtcaaTGAATTACAGTCAACCTGCAATTTATTGTT
GATATTACTAATGTGCACTTCGAAAAGCTTGGAAAAAGCCGGGACACGCA
CATACTGTACCTCGTTTACCTTAATTGCTCCTCCCCCGATCGATATGCAC
GATCATAATTTGCGTAGGTTTATCGTGTTTCAAGATCTGAGAGAATTTTA
TACAAGGTTGAGACTGGACTTGCCGTTGCTTGATCAAGCTGTCAACATGA
AGAATGTCGTTAATACTAAATagacaatttttttaatattttatatataa
aaaggTATTCTTTTAGACATATTGTAGAGATAATaataatttgtaatttt
tttttcatacatAGATTTAACACTAAAATTCAACtctaaaacttttgaat
tgTTATTAACTGCTCAcagctcaaaaatattttcttagaGATGAGATTTC
AGTCTGCACTTTTACAATAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_506:278063..282766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069719 ID=TCONS_00069719|Name=TCONS_00069719|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at scaffold_506:278063..282766- (Clytia hemisphaerica)
AATAACAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCACTACAAGC
CAAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATTAT
CACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCACA
CTCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCATGG
ACAACTCAATATGGTGCAGCAATATGGATGGGTTTAATTGTAAGTTTACC
CATAGTCATTATAAAAAACCCTGGTTTGGTAATGTAATTATTTTAGCTTT
ATTGTCAATCTTTCCTTCGTTGTAAATAAAAGGCAAGTTGTGATTTGCAT
ACTTTTTTATCACGTTACCATTTTCGACTCTTGGGATTGGTTTATTTTAT
GATCACATGATCAAAAACTATGCAAAACAAATCAATTAAAGGTACGCAAG
TTCTAACGGTTAACAATAGAAAGAAAAAAAAGCCTTCCAGACCGGGTTTT
TCTATAATGACTATGGTTTACCGTCCGTTTGTACATACATGTTTTTATTT
TATTTTATAAGCATAATGATTATAAGCATAAACGTCAGGGCTCGGTTTTT
TTAGTACCTAAACAATGGCTCTATTGTTTGAGAACAATAGAATGCTAAGC
ATAATGTGAGCCTGGCTGATATAGGGACAGACACTTGCTTTAAAAAACAC
ACGTACTTGACTGTCTCTAATTCGATTTTCAATTTTTTCGATTTTCATCG
CATAAGGGAACGTATCGAATAGTAAAAGTTCCTTTATGGGAGCTTCTGAT
AAAAGATGACTTTCAATATTATCGAAAAATCGAGTGTGTTAAATAGTAGA
ACGTTGAATTAGGGAGCGTCAATTGTATAATTCGAACTATACTTTAATAG
TATTCCATTTGTAGTTTTTCGATTACGATCTTTGGGCGATCTTTCAAAGC
CTTAGTGCAAGCTGTTTTTTGAAATCTGCTCGCACTTATTGCAATAAAAC
AATAGGGTATTATTCCAGTAAATATTTTTCTTTCATCCTCCTCTCACCCA
AAGTAGAAATTCTGAATAAAGGGGGTACATAGTCTACGGTGGGATATTCT
TCAGNCGTCAATTGTATAGTTCGAACTATACTTTAATAGTATTCCATTTG
TAGTTTTTCGATTTACGATTTTTCAAAGCCTTAGTGCAAGCTGTTTTTTG
GAATCTGCTCGCACTTATTGCAATAAAACAATAGGGTATTATTCCAGTAA
ATATTTTTCTTTCATGCCTCCTCTCACCCAAAGTAGAAATTCTGAATAAA
GGGGGTACATAGTCTACGGTGGGATTATTCAATCTTTTTGTAACAGACAA
TCTGCTCCAGAAATATGGGAATTTTCTATATACCCAGGACAGAAATTTTT
GATATCCCAAGGGGTAAATTATCGAATGATCAAAAGATTTCTTTTTCTCA
TAGATGGCAATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACA
CAAGTCTAAATATGTAAGCAACACTGTTTTTGATTTCTGAGAATATTCTG
TATTGTGATGGCACTATGATATGTGTATTGATGCATAGAGATTCGATTCA
GCCCTTCGGGCTTATACTTCATCGGTAATAATGCGTTACGTATATAACAT
GGTGATAATCGAGTGCCCCCCCTTGGGGGATATGGCTATTCTTATGAAGT
ATATTATAATGATAAAACATGAAATTCCACCATCTCACCGACTTTTAAGC
GCGTTAAACTACAATTGGAAAGTAGAGTTTTAACTCTGAGTTTTAACATG
AGACTTAAGCCTTAGGGTCTTAGGATCTCAGGATTTAAAAGCTCAAATTT
ACTCTAATAGGGCTTGAAATATAGCCTAGAAGCCACCAAACCCCTCCAAA
ATCGAAATATTCAATGAAAGAGAGTTGAAGTGCTAAAATTGCCTGAAAAA
TGAAATTCTCAGAGCATTAAAATACACTAAAATCTCGATATATTTCGACC
ATAATTGTACACAAAAATTGGCTGAAATTTGACTTGCGCATACATTTATT
AAAACTTTCTAATTATTTCTTTTCAGATGTACGGTACCATGTTTCTAAAC
ATTGTCGTCGTTTTAGCCGCCATTTTACTTCTCATCTTTTCCCATCAAAC
AATCACGTGGTTTGACACGTGCCAATATCAATATCACGTGTTTCATACTC
ATGTTATGCAAGTAAGAGACTGTTCTGAAGACGATAAATCAACTGGCAAT
ACAATGTATTGGACTGTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTAC
AATTATGATGCTGGTTTTATTGGGATTCTCAAATTCATCATTGTTGGAAG
AAATGTGCCAAGGAACGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGA
CCAGATAGTCAGGTAAATCTTCTTTTTCTAGTCTTTCTTTTTCCAATAAC
ATTGAGTCATATTTTGGAAATTGGTTAGCTTTTTGGGTCTATTGTCGGTT
TTTTTCAAGTTCACATGACTGTATTTCCATTGGCTGAGCATTTATACAGG
GTTTGTAAATAGTTGTGCCGTACTTGTTCTCGGAAAGTGCAGGCAATTGC
TATTTCCTTTTTGGATTAAGTCTAAAGACTGATTTTCTCCTTTTATTTGC
TTAATCTTATACAATAGTATTTTTGTCCTTGCAACACAAAAATTTAAGTT
CTCGCCTAGTACACTGATCTACCTCCCTATGTGCTAAAATCCGCATGAAA
GAGGAATAGGTTCGAATCTACAAGTGTGAACGATGTCAAATTTCTGAAGT
CATTACATTGATACAAGTTTTTTTTTCATAAGAACATTCAAAATTTTTGA
AGCCTTCAAATATTCTTAACTTGTTTAGCTTTAAGCCTAAAAATATTCTG
AACATGTTCTTATTTTCACCATTTTTTGAGCAATCTTGTCAATTTCACCC
AATTTGAAATTGGGTGTTTTAGAGTCCGCAAAGCCTTAAAATGTTCTTAT
CTTGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTG
TTCTTATAAAAAACGTCTATGTACTCACAGATGCAGATCTTTGTTTCATT
CGACCCCTTGTAAACTGGAACACAGTCCCCTGGAAGAGTTTGGATTGTTA
GGTGTATTGAATTTTTTTGAATAGAGGTTTCTTCAACTTTTTCTTCATTC
AAAATTTCAACAGGTCAGCTACAAGACAAAGAACACGCACGAGTTCAATA
AAGAAATGCATGTCAATAATGGTGGGGCACAAAAAAAAGAACAGTCAATG
AATTACAGTCAACCTGCAATTTATTGTTGATATTACTAATGGTAAAGTAT
GTATTGTGAAAGATCGAGTTACAATGGTATTTTTAAAAGTGATAGGTACG
GCGGTGGATTTTCAAAATCAGCGCATTTGGGACCAGCTTCTTTAGAAATG
GAAAAAAAGTCCTGGGTACTATATTACAGATGAAAATTATATCAAAAATT
ACTTGTTATTGATTCATAAAATAACATTGTACCTGAAGTGGATAAATTTT
CGCAAAATGAAGATTTTAAATTTTCGAGTCGACAAAATTTCGTGAATTGG
CCAATTTATCGCCTAATTTTTTTCTTTTTTTCCGGATTATTCATCTTTTC
ACAAGGACTAAATTTCGCAGAAATTGTCAAAAATCGTGAAAATTCTAATC
GACGTAAAATTTACTTCAAGTTACTCAAAGAAAAACACAGAGATAAATGA
GTTTTTACGACTAGCTTGCAATATAAACAGACCTGGATTAATCGTCGGTT
TTTTGCATTTTTGCGGACATAAGTCCGTCAACTTCGATTTCGTGGACACA
AAAAGCGTAGGAATATAGGAGCACGTTTGTTTCCTTCGGAGAAGTTAGAG
AATGAAAGTCTGTCTATTGATTTTAACGAGACAAAAACCAGACGACTTCA
CGTCTACTTATATTGCGAGCTAGCCGTTTTTACACTCCACTAACTTGAGA
GTGTTTCCAAAATTTACATTGCATTTGACAATTGTGCAAGTCATTCATTC
ATAGATGAATAGAGGGACTTTATCAAAGACATTCCTTAATTCCTAACGAA
TCACCTTGCCGTGCATGAAGCTCGATTGGGCAACTTGTAATTATTATCCA
GTTTAGCAGCAACCACCTTCCCAAAGCCACACGAAAAATCAACCCTTTCT
TGAAAGTTTTTGACCATTTTAAGACAAAATATGGTCAGATTTTTCAATTT
TTACACCCTTGGAGTGCAATTTTTCTCATGTCTTCATCCTTGCAGTGCAC
TTCGAAAAGCTTGGAAAAAGCCGGGACACGCACATACTGTACCTCGTTTA
CCTTAATTGCTCCTCCCCCGATCGATATGCACGATCATAATTTGCGTAGG
TTTATCGTGTTTCAAGATCTGAGAGAATTTTATACAAGGTTGAGACTGGA
CTTGCCGTTGCTTGATCAAGCTGTCAACATGAAGAATGTCGTTAATACTA
AATAGACAATTTTTTTAATATTTTATATATAAAAAGGTATTCTTTTAGAC
ATATTGTAGAGATAATAATAATTTGTAATTTTTTTTTCATACATAGATTT
AACACTAAAATTCAACTCTAAAACTTTTGAATTGTTATTAACTGCTCACA
GCTCAAAAATATTTTCTTAGAGATGAGATTTCAGTCTGCACTTTTACAAT
AGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043411XLOC_043411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069719-exon-scaffold_506-1575043694:282528..282766TCONS_00069719-exon-scaffold_506-1575043694:282528..282766Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1575043694:281254..281313TCONS_00069719-exon-scaffold_506-1575043694:281254..281313Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1575043694:280355..280690TCONS_00069719-exon-scaffold_506-1575043694:280355..280690Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1575043694:279426..279553TCONS_00069719-exon-scaffold_506-1575043694:279426..279553Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1575043694:278063..278471TCONS_00069719-exon-scaffold_506-1575043694:278063..278471Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1510915933:282528..282766TCONS_00069719-exon-scaffold_506-1510915933:282528..282766Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1510915933:281254..281313TCONS_00069719-exon-scaffold_506-1510915933:281254..281313Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1510915933:280355..280690TCONS_00069719-exon-scaffold_506-1510915933:280355..280690Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1510915933:279426..279553TCONS_00069719-exon-scaffold_506-1510915933:279426..279553Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1510915933:278063..278471TCONS_00069719-exon-scaffold_506-1510915933:278063..278471Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1491911889:282528..282766TCONS_00069719-exon-scaffold_506-1491911889:282528..282766Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1491911889:281254..281313TCONS_00069719-exon-scaffold_506-1491911889:281254..281313Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1491911889:280355..280690TCONS_00069719-exon-scaffold_506-1491911889:280355..280690Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1491911889:279426..279553TCONS_00069719-exon-scaffold_506-1491911889:279426..279553Clytia hemisphaericaexon
TCONS_00069719-exon-scaffold_506-1491911889:278063..278471TCONS_00069719-exon-scaffold_506-1491911889:278063..278471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:278063..282766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284217	0	0.127698	0.0225956	25.0123	21.7676	14.187	12.4456	9.32889	15.8081	0.00637297	5.21362	5.12178	3.97857	2.08902e-09	2.98929	5.81967	6.39223	2.32265	5.29766	9.854e-05	5.31223	2.72151	3.90243	0.0004362	6.83908	26.7111	21.6068	2.95635	1.59522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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