TCONS_00069710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069710
Unique NameTCONS_00069710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069710 ID=TCONS_00069710|Name=TCONS_00069710|organism=Clytia hemisphaerica|type=transcript|length=1575bp
caggGCCACGCTCATGTTTTACGTCTATTGGATCTACCTGTACTGGAGAA
TTTACAACGAAACGAAatgttcaaaaatcaaaaagaccgCAAAAAAAATC
GGGAAATGACATCTGCCGGAACTAGCCGGAGTGGATATTACTCAGCTAAA
TCAACTGATTTGAACTCTAAACCAACTTCTCCGGGTGGGTTGTTACCAGG
ATATAACACACCCGCCCGATTAACGCCAGTCTCACCCATATCAGAAACCA
CTGTAAACCAACAGAGAAGGTCTATCAAGAAAAGAGATTCAAACCATTCA
TTGAGTTCCGGATACTCATCTGATGCTGGCCGGACTTCACCGAGACAAAA
CTGGCAGAATTTGCGTAAGAAAGCAATCAAGAAGATTAAAACGCCGAAAT
TTGTGAATCAGTTATCAGAAATCCCCTCGTGGCAAAGAATAGCAGGAGCA
GAAAGCTGCAAAGGAAACCTTGGACTGGGAGCATATATCAGGATCGATAC
TCTAGGTCATGGTGATGTCTTTGGATTCAAATATGCAGCAAAAGAAGAAA
ACCGCCACGTCGACTGCTTGAAGAAATTTGTCCTCCTTAGTGCTGGATGT
GACGTCATCAGAATATCCAAACCAAACGTTCAAAAAATGACAGATAATGA
AACGATATCAAAAATAGAACAATTCGAACCGGGTTACCCGTCAGACGAGA
TTCTTTTCGAGGTTTATCGACGATATCATGACTGGAGAACGTTTAGAGAA
AAGTTGGTGGATGATATTGCGTTGTACCAAACCAATGTGACCAAAGCCAT
CAATAACCGTTCTTTGTCCATACCGAAAATTCCACGCATTGAAAATAAAG
CGTATTCCCGGATTCAATCTCCTGTTGAACATTGGAATATGCTTAAAGAA
GAGGGACACTTAAAGCAGGAAGAAAACTCCCAATGGAAGGTGACACCAAT
TCCATCAACTGAAAAAGATATGGACGAAGTGATCAAGAGATTACGTGCCG
CCCCTTTCCTTCAAGACCAACTTTTGAAAGCTAAAGGAAGTCAAAGACAA
CTTATTCTGACGCACGGCGGTGATCGTGTTAACCGTTTCCCGAAAGTTGT
GACCATAAAACAATGATAACGTAATTGCtttcttaaatttgaaaaagatt
taacaAAGAGGTGGAGGAATATCGTTTCAAGTCTTTGGCTTTTCGAAATG
ACCACCAAAAGACGATATCGATAATCCTTTTGAAATAAAGATTACCATTC
CTgctgaaaacaatttttttaaatttgtaaatatttatGTACAAAGCCGT
TGCACGGATTGCACTCCATAATGAGACCATATttgcacgtgacggttccg
tttcgctccaaaACGGAATGAatccattctattggttaaaagtgacgtaa
cacttgaatgtaactaatagaatggcttcattttgtttcggaaccgtcac
gtgcaaACATGGTACATACATACtatcttaaagtttttttttgaaagagt
tCTATTTTCTTTGTAAATACACGCGATactatttattaaaatttttgtgA
TATCGTCAATATTTTTGTATAAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_506:203132..207773-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069710 ID=TCONS_00069710|Name=TCONS_00069710|organism=Clytia hemisphaerica|type=transcript|length=4642bp|location=Sequence derived from alignment at scaffold_506:203132..207773- (Clytia hemisphaerica)
CAGGGCCACGCTCATGTTTTACGTCTATTGGATCTACCTGTACTGGAGAA TTTACAACGAAACGAAATGTTCAAAAATCAAAAAGACCGCAAAAAAAATC GGGAAATGACATCTGCCGGAACTAGCCGGAGTGGATATTACTCAGCTAAA TCAACTGATTTGAACTCTAAACCAACTTCTCCGGGTGGGTTGTTACCAGG ATATAACACACCCGCCCGATTAACGCCAGTCTCACCCATATCAGAAACCA CTGTAAACCAACAGAGAAGGTCTATCAAGAAAAGAGATTCAAACCATTCA TTGAGTTCCGGATACTCATCTGATGCTGGCCGGACTTCACCGAGACAAAA CTGGCAGAATTTGCGTAAGAAAGCAATCAAGAAGATTAAAACGCCGAAAT TTGTGAATCAGTTATCAGAAATCCCCTCGTGGCAAAGAATAGCAGGAGCA GAAAGCTGCAAAGGAAACCTTGGACTGGGAGCATATATCAGGATCGATAC TCTAGGTCATGGTGATGTCTTTGTAAGTCAAAAACGTTGTTTTAGCTTCC ATCTAATGTTATTCAGATGCTATGAACGTTAGCTGGACGTTAAAGTAACC TTGTTCTCATGATATGATTACATGGTCAGTTTGTTTTCGTTTTAAATTTC ACTTGTTATCCTTACTTGATGAAGGAGAAGTCATATGAGTCTAAATACTC ATTAGTTACTAGGTATGAAAATTTCAAGGTACCCTTTATGAAGTGATGGA GCCAATTTTTTTGGGGAAAATAGTCGCCCACCATGGTTGAGCGGCGAAGA AAATCTTTCACTTTTTGCACCTATTAAACATCTTAAAACGTTTTCTAATT GGGTAACAACATTTTTGTTATGACTTTAGAAAAGAATTAGTCTGCTAAAA AAGGATCCATGGCGATCCGACTGCAATTGTAACCAATATACTTTGTATAT TCTATAGCTATTGAAGAATATATTTGATTACGAATGAAAACCTGATCTCT TTACACCCAGGGATTCAAATATGCAGCAAAAGAAGAAAACCGCCACGTCG ACTGCTTGAAGAAATTTGTCCTCCTTAGTGCTGGATGTGACGTCATCAGA ATATCCAAACCAAACGTTCAAAAAATGACAGATAATGAAACGATATCAAA AATAGAACAATTCGAACCGGGTTACCCGTCAGACGAGATTCTTTTCGAGG TTTATCGACGATATCATGACTGGAGAACGTTTAGAGAAAAGTTGGTGGAT GATATTGCGTTGTACCAAACCAATGTGACCAAAGCCATCAATAACCGTTC TTTGTCCATACCGAAAATTCCACGCATTGAAAATAAAGCGTATTCCCGGA TTCAATCTCCTGTTGAACATTGGAATATGCTTAAAGAAGAGGGACACTTA AAGCAGGAAGGTTCGTAAAATACTTGTGTATCAAATCTGAGAGATTGAAA ATTAATGGTCTTCAAATATATCGAGAATTTTGTCATTTTAACGTTTTTTC AGAATTTAAAGTTCGGGCGAGATTTGCGATTTTAGCATTTCCAATTATTT CATTTGATATTTCGATTTTGGAGAGGTGTTCAGTGGCTTTTAGACTATAT TCCAACCTTATTGGAACAATTTCAAGCTTTTGAACCCTGGAATCCTAAGC TCTTAAGTCTCATTTTAGAACTCTACATTCCAAACTAACTTAGAGCACTT AAAACATTCGTAGTGTTTAAAATTTTGCAGGGATCCCCCACTTTAACTCG TACATCTTATCCATGAATGTTAAGGTCAAATTTGGGTTAGTTGGAAATCT CTTTACTTCTAATATTTTCATATCCGATACATCTTCTGTTGAAACTTAAT TTAGGCGTACAAACTTTCGTGAGCATAAATGTTCGCAATTTTCGCAAATT TTAGCCCTTTTCGCGAAAGTAAATGTCTTTGAAAATTCATTCTAGGGCCA TTCGCTAAAATTCGTGCTCGCGAAAAATTCTCTCTAACATAGAAAATCTG TAAAAGTTCTAACCTAAATAAAATGTAAGATTTATTGAACTTGTTAGCCT GTCAAAGCCTCATAAGTAAAAAAACAAAAGTTACAATCAAATTCAAGAAG TATTTGTCCCTCTAAGCCATTTTATCGTGTGTAAATGTTCACTTAATGTC TCGATTCGTGAAAAGTAACTGTCGTAAATGCCGCGATTTTTCGACCACGT GAAAGTTTCTGTTTGTGAAAGTTTGTATACCTCAAGTAAGTTTGTCATCC TTTGCTCAGAGTTTACATCGACACTGTTCCAAACATCAGATATTTCTCCC TTGATCTACTTGATGTCAGGCTTCAGCTCATCGCTCCCATTTGTGTATAG TGCATTCCTTTTGTCATTTATTCTTTGTCCTATTGTTATTTTTTAGTCCT GATTTTTTTGTATTTTTTCTTCCACATATTGTTATATATTGGGTTTTTTG AATTACAAATTGTCATGGTTAGTCGCTATAGTTTGTATTTTCTTCAATGT GTATATGACTTCATTATATTTCTAGAAAACTCCCAATGGAAGGTGACACC AATTCCATCAACTGAAAAAGATATGGACGAAGTGATCAAGAGATTACGTG CCGCCCCTTTCCTTCAAGACCAACTTTTGAAAGCTAAAGGAAGTCAAAGA CAACTTATTCTGACGCACGGCGGTGATCGTGTTAACCGTTTCCCGAAAGT TGTGACCATAAAACAATGATAACGTAATTGCTTTCTTAAATTTGAAAAAG ATTTAACAAAGAGGTGTGAGGAATATCGTTTCAAGTCTNATTGAAAATAA AGCGTATTCCCGGATTCAATCTCCTGTTGAACATTGGAATATGCTTAAAG AAGAGGGACACTTAAAGCAGGAAGGTTCGTAAAATACTTGTGTATCAAAT CTGAGAGATTGAAAATTAATGGTCTTCAAATATATCGAGAATTTTGTCAT TTTAACGTTTTTTCAGAATTTAAAGTTCGGGCGAGATTTGCGATTTTAGC ATTTCCAATTATTTCATTTGATATTTCGATTTTGGAGAGGTGTTCAGTGG CTTTTAGACTATATTCCAACCTTATTGGAACAATTTCAAGCTTTTGAACC CTGGAATCCTAAGCTCTTAAGTCTCATTTTAGAACTCTACATTCCAAACT AACTTAGAGCACTTAAAACATTCGTAGTGTTTAAAATTTTGCAGGGATCC CCCACTTTAACTCGTACATCTTATCCATGAATGTTAAGGTCAAATTTGGG TTAGTTGGAAATCTCTTTACTTCTAATATTTTCATATCCGATACATCTTC TGTTGAAACTTAATTTAGGCGTACAAACTTTCGTGAGCATAAATGTTCGC AATTCTCGCAAATTTTAGCCCTTTTCGCGAAAGTAAATGTCTTTGAAAAT TCATTCTAGGGCCATTCGCTAAAATTCATGCTCGCGAAAAATTCTCTCTA ACATAGAAAATCTGTAAAAGTTCTAACCTAAATAAAATGTAAGATTTATT GAACTTGTTAGCCTGTCAAAGCCTCATAAGTAAAAAAACAAAAGTTACAA TCAAATTCAAGAAGTATTTGTCCCTCTAAGCCATTTTATCGTGTGTAAAT GTTCACTTAATGTCTCGATTCGTGAAAAGTAACTGTCGTAAATGCCGCGA TTTTTCGACCACGTGAAAGTTTCTGTTTGTGAAAGTTTGTATACCTCAAG TAAGTTTGTCATCCTTTGCTCAGAGTTTACATCGACACTGTTCCAAACAT CAGATATTTCTCCCTTGATCTACTTGATGTCAGGCTTCAGCTCATCGCTC CCATTTGTGTATAGTGCATTCCTTTTGTCATTTATTCTTTGTCCTATTGT TATTTTTTAGTCCTGATTTTTTTGTATTTTTTCTTCCACATATTGTTATA TATTGGGTTTTTTGAATTACAAATTGTCATGGTTAGTCGCTATAGTTTGT ATTTTCTTCAATGTGTATATGACTTCATTATATTTCTAGAAAACTCCCAA TGGAAGGTGACACCAATTCCATCAACTGAAAAAGATATGGACGAAGTGAT CAAGAGATTACGTGCCGCCCCTTTCCTTCAAGACCAACTTTTGAAAGCTA AAGGAAGTCAAAGACAACTTATTCTGACGCACGGCGGTGATCGTGTTAAC CGTTTCCCGAAAGTTGTGACCATAAAACAATGATAACGTAATTGCTTTCT TAAATTTGAAAAAGATTTAACAAAGAGGTGGAGGAATATCGTTTCAAGTC TTTGGCTTTTCGAAATGACCACCAAAAGACGATATCGATAATCCTTTTGA AATAAAGATTACCATTCCTGCTGAAAACAATTTTTTTAAATTTGTAAATA TTTATGTACAAAGCCGTTGCACGGATTGCACTCCATAATGAGACCATATT TGCACGTGACGGTTCCGTTTCGCTCCAAAACGGAATGAATCCATTCTATT GGTTAAAAGTGACGTAACACTTGAATGTAACTAATAGAATGGCTTCATTT TGTTTCGGAACCGTCACGTGCAAACATGGTACATACATACTATCTTAAAG TTTTTTTTTGAAAGAGTTCTATTTTCTTTGTAAATACACGCGATACTATT TATTAAAATTTTTGTGATATCGTCAATATTTTTGTATAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043408XLOC_043408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069710-exon-scaffold_506-1575043694:207252..207773TCONS_00069710-exon-scaffold_506-1575043694:207252..207773Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1575043694:206364..206763TCONS_00069710-exon-scaffold_506-1575043694:206364..206763Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1575043694:203132..203784TCONS_00069710-exon-scaffold_506-1575043694:203132..203784Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1510915933:207252..207773TCONS_00069710-exon-scaffold_506-1510915933:207252..207773Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1510915933:206364..206763TCONS_00069710-exon-scaffold_506-1510915933:206364..206763Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1510915933:203132..203784TCONS_00069710-exon-scaffold_506-1510915933:203132..203784Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1491911889:207252..207773TCONS_00069710-exon-scaffold_506-1491911889:207252..207773Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1491911889:206364..206763TCONS_00069710-exon-scaffold_506-1491911889:206364..206763Clytia hemisphaericaexon
TCONS_00069710-exon-scaffold_506-1491911889:203132..203784TCONS_00069710-exon-scaffold_506-1491911889:203132..203784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:203132..207773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0952306 0.135076 0.0882205 0.0863099 0.443646 0.55354 1.45808 1.22957 0.984874 1.14763 0.736767 0.645762 0.892446 0.556089 0.0934025 0.131888 3.06104 3.03146 4.19654 3.67874 4.25216 3.87048 3.25583 3.40223 30.5433 14.5753 10.8975 7.81675 0.221006 0.17622
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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