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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069706 ID=TCONS_00069706|Name=TCONS_00069706|organism=Clytia hemisphaerica|type=transcript|length=4992bpRun BLAST on NCBI transcript from alignment at scaffold_506:119870..173016- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069706 ID=TCONS_00069706|Name=TCONS_00069706|organism=Clytia hemisphaerica|type=transcript|length=53147bp|location=Sequence derived from alignment at scaffold_506:119870..173016- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069706 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 1.364e-53 Identity = 108/215 (50.23%), Postives = 145/215 (67.44%), Query Frame = -3
Query: 4352 GKSTIGNLIMRLYDPTSGKITVDGRDMKSLCLQKLHEKMGIVTQNPDLMEGTLEENIGYGSVEDFCSRKDVERAAQLAKC-DFIDKFRSGYDTYAGGSGMQLSGGQKQRLAIARAIIRNPKILVLDEATSSLDAKNEKEVQEALENVMDSQTVVVIAHRLSTIKNADNIVCMKDGTIVEQGTHDELMKTKGTYFDLISKQLVS--AEQTKTSDES 4987
GKST L+ RLYDPT G ++VDG+D++++ ++ L E +G+V+Q P L T+ ENI YG + + ++E+A + A DFI K +DT G G QLSGGQKQR+AIARA++RNPKIL+LDEATS+LD ++E VQ AL+ +T +VIAHRLST++NAD I DG IVE+G HDELMK KG YF L++ Q E +DES
Sbjct: 432 GKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYG--RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVELENAADES 644 HSP 2 Score: 202.601 bits (514), Expect = 2.512e-52 Identity = 99/200 (49.50%), Postives = 139/200 (69.50%), Query Frame = -3
Query: 4391 GKSTIGNLIMRLYDPTSGKITVDGRDMKSLCLQKLHEKMGIVTQNPDLMEGTLEENIGYGSVEDFCSRKDVERAAQLAKCD-FIDKFRSGYDTYAGGSGMQLSGGQKQRLAIARAIIRNPKILVLDEATSSLDAKNEKEVQEALENVMDSQTVVVIAHRLSTIKNADNIVCMKDGTIVEQGTHDELMKTKGTYFDLISKQ 4987
GKST+ L+ R YDP +GK+ +DG+++K L +Q L +GIV+Q P L + ++ ENI YG S++++ RAA+ A FI+ + Y T G G QLSGGQKQR+AIARA++R P IL+LDEATS+LD ++EK VQEAL+ + +T +VIAHRLSTI+NAD IV ++G + E GTH +L+ KG YF ++S Q
Sbjct: 1075 GKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274 The following BLAST results are available for this feature:
BLAST of TCONS_00069706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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