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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069696 ID=TCONS_00069696|Name=TCONS_00069696|organism=Clytia hemisphaerica|type=transcript|length=1529bp
AAAGTGCCAATGTTTTGCGAAAAAAATCAGACGTAAAACTGATGAAAAGC
CAAGTTTGAAAACATGTATTTTTCCTTTTAGATGAAAAATAgatcaaaaa
aatagaaaatagaaaaatatatatgtaGAAGTCCTTGGTGCCAAATATGA
GAACAGGAGGAGGTTTTTGTCAGCTCTGTCAAAAGAAAAGAACCTTCCAT
AGTGGAAATGCAATCAAATCACCTCCAAATGACAAATTAAAGAAGAAAAG
CTTTCGTCCAAGATGGCTGGTATTATCATCAGTGGATCAATGTAGCGATT
GCACCaaagatgaaaacaaaaatgaaagtggTGATAAGGATTGTACAATG
CTTTTTTATTATACAGACCAATCAGAATCGACGTTGAAAGGATACTTCAA
TCTTACGGACGCCATCATAGAATCAGTTGATCACATTACCGAAGATGTTC
CATCCAAATATCGAGATTGTCCAAACATCATCCGATGGGAGCTTCCCAAA
CACGAGGGTCGTGTCTTATATACTTTACTCGAGACTCCAGAAGCAAAAGA
CTTGTGGTTAAAAGCAATTGATGAACTGAAATTTGTAAGTTGAATGTATA
CATTTTAAAGTGGCTTTTAGAATCTTAGATTTGAGGAATTTTTATTAGGG
AGTTTCGAGTAACGAGTTATGTGCTGCATTTGAAACACATTACCGATTTT
CAAACAGTTCTTTTGAAGATATCGATCAACAGTGTTTTTTTaactacagt
caactctctctaattcgagctcAAATGGGAAATCTATTTCCTTTTGAATT
ATAGAGAGATTTATAGAACGATTCGAAAATAGAAGTTTGAATTAGCGAGA
GTGCACTGTATTCTTGGGTACCTGCCAGATAGAATAtcttaaatgaaaaa
gaagggTTGGAAATTCTTAAAAGACGTCAGGTTGGAACAATGACCTTGAT
ATAcgctggaccaagtttctcaatcctggccaagcaaaatctttgataag
agttttttgaaaagtggtacctaGTGgtactactcaatagcggtgtaaat
gcatcgagagcgctagatctacatTTCCTCGAAAAcctttgatgatgtag
cgccgttaagacgttaatttttaacattgcaatggctttttTCTCAGGTA
CCAATTCCAATTTTACCATAGGGGTTAAAATACTGAAGAATAACTCGAGT
AGAAAACTCCCCGGCGAGTGCCCAATAATAGTTACCCGAAAGAGTGGGCT
GTTTTATTTATTAATTATCTAACTTTCATTTTGTACTAATATATAACTAC
AAGACTTTGTTTTCGATATAATAACACCTTGTATCATAATTAAATTGTAA
TATACAatagaaaaagtttattttatcCCTATATTAACCAATTATTTGAC
CTTATTTTAAACACACAAAACTtgtatctatatattaatagtataacgcg
tatgtcattttgttttctgtctgtgtgtcactttcgatttcgcaagcaat
gttttgttcttttaaaagatgacttttgc Run BLAST on NCBI transcript from alignment at scaffold_506:359408..361889+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069696 ID=TCONS_00069696|Name=TCONS_00069696|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at scaffold_506:359408..361889+ (Clytia hemisphaerica)
AAAGTGCCAATGTTTTGCGAAAAAAATCAGACGTAAAACTGATGAAAAGC
CAAGTTTGAAAACATGTATTTTTCCTTTTAGATGAAAAATAgatcaaaaa
aatagaaaatagaaaaatatatatgtaGAAGTCCTTGGTGCCAAATATGA
GAACAGGAGGAGGTTTTTGTCAGCTCTGTCAAAAGAAAAGAACCTTCCAT
AGTGGAAATGCAATCAAATCACCTCCAAATGACAAATTAAAGAAGAAAAG
CTTTCGTCCAAGATGGCTGGTATTATCATCAGTGGATCAATGTAGCGATT
GCACCaaagatgaaaacaaaaatgaaagtggTGATAAGGATTGTACAATG
CTTTTTTATTATACAGACCAATCAGAATCGACGTTGAAAGGTAAATGAAA
GTATTTTTATCTtctgaaatttgttttgaaattgggttattccagaaata
gtttgcaccaccaatgttgaggaggtgtgacgtccagggtggttttgaaa
atgaaaaatttaaggGGTTCTGGTTTTTCGAGTCAGCaaaatgaggttga
aaatccagggtggtcagtaaaacgaggtcgaaaatccagggtggtctagA
AAAGTGAGAAAAATAAATCCAAGAGGGTCCtgaaaaactgacaaaatcAA
GAGATCACCTTTCCAAAAAATgatctcctcaacatagggggtacaatcTT
TTTTTCTGTAATAGCCCAATTATACTAATCATTCACACTGAATCAAATTA
GAAACTAAAGAAAAACACTTACTTACATACcataaaatatttaagattgc
tttttaaaaatggaCAAATTTCCCCTTTGAAAGTATGAAAACACATAAGA
TATATATTCCTGAACCAGAAAAGGAGGATTCAGGTTAACCCCCCCTTCCA
TAAGGATGCCTCTTATACCCGCTCTTATGTTAGTATCCGTCCCCTCACTT
GAGTTTTTCAAAAGATGCCCACCCTTTAACAAAGAGTTCGAactctttgt
taaaaaaactaTCGCTAGACGTTAGCAGCGGATAATATCTACTTTAAAGA
GAAGTTAATGAAATGATTCTCCGATCACTgagctaaaaaaataagactgG
ATGAGATACTATGTCCTTGCTTGGACGAGATTGAGTTGTGTCTCAAAATG
GTAGCCTGAGCTGTGAAATTTGTTGTTAATTTTTGCTTCACAAAATAAAA
CTCAGCAAgtcttttccattttttaaaaaatttcgcgCATTTCAAGCCCT
TAAACATCCACGAGTTTCAATTCTAGTCACTTCGaaactttaaactcaat
ggcttTGTGGTTCTATTCATAAGTAAAGTCCATTTAATTGCAGGATACTT
CAATCTTACGGACGCCATCATAGAATCAGTTGATCACATTACCGAAGATG
TTCCATCCAAATATCGAGATTGTCCAAACATCATCCGATGGGAGCTTCCC
AAACACGAGGGTCGTGTCTTATATACTTTACTCGAGACTCCAGAAGCAAA
AGACTTGTGGTTAAAAGCAATTGATGAACTGAAATTTGTAAGTTGAATGT
ATACATTTTAAAGTGGCTTTTAGAATCTTAGATTTGAGGAATTTTTATTA
GGGAGTTTCGAGTAACGAGTTATGTGCTGCATTTGAAACACATTACCGAT
TTTCAAACAGTTCTTTTGAAGATATCGATCAACAGTGTTTTTTTaactac
agtcaactctctctaattcgagctcAAATGGGAAATCTATTTCCTTTTGA
ATTATAGAGAGATTTATAGAACGATTCGAAAATAGAAGTTTGAATTAGCG
AGAGTGCACTGTATTCTTGGGTACCTGCCAGATAGAATAtcttaaatgaa
aaagaagggTTGGAAATTCTTAAAAGACGTCAGGTTGGAACAATGACCTT
GATATAcgctggaccaagtttctcaatcctggccaagcaaaatctttgat
aagagttttttgaaaagtggtacctaGTGgtactactcaatagcggtgta
aatgcatcgagagcgctagatctacatTTCCTCGAAAAcctttgatgatg
tagcgccgttaagacgttaatttttaacattgcaatggctttttTCTCAG
GTACCAATTCCAATTTTACCATAGGGGTTAAAATACTGAAGAATAACTCG
AGTAGAAAACTCCCCGGCGAGTGCCCAATAATAGTTACCCGAAAGAGTGG
GCTGTTTTATTTATTAATTATCTAACTTTCATTTTGTACTAATATATAAC
TACAAGACTTTGTTTTCGATATAATAACACCTTGTATCATAATTAAATTG
TAATATACAatagaaaaagtttattttatcCCTATATTAACCAATTATTT
GACCTTATTTTAAACACACAAAACTtgtatctatatattaatagtataac
gcgtatgtcattttgttttctgtctgtgtgtcactttcgatttcgcaagc
aatgttttgttcttttaaaagatgacttttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069696-exon-scaffold_506-1491911889:359408..359797 | TCONS_00069696-exon-scaffold_506-1491911889:359408..359797 | Clytia hemisphaerica | exon |
| TCONS_00069696-exon-scaffold_506-1510915933:359408..359797 | TCONS_00069696-exon-scaffold_506-1510915933:359408..359797 | Clytia hemisphaerica | exon |
| TCONS_00069696-exon-scaffold_506-1575043694:359408..359797 | TCONS_00069696-exon-scaffold_506-1575043694:359408..359797 | Clytia hemisphaerica | exon |
| TCONS_00069696-exon-scaffold_506-1491911889:360751..361889 | TCONS_00069696-exon-scaffold_506-1491911889:360751..361889 | Clytia hemisphaerica | exon |
| TCONS_00069696-exon-scaffold_506-1510915933:360751..361889 | TCONS_00069696-exon-scaffold_506-1510915933:360751..361889 | Clytia hemisphaerica | exon |
| TCONS_00069696-exon-scaffold_506-1575043694:360751..361889 | TCONS_00069696-exon-scaffold_506-1575043694:360751..361889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:359408..361889 + |
Blast
The following BLAST results are available for this feature:
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