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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=transcript|length=2285bpRun BLAST on NCBI protein sequence of TCONS_00069691-protein >TCONS_00069691-protein ID=TCONS_00069691-protein|Name=TCONS_00069691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MPRKFTSLLGQTLKVPQLLRLSAARCQSTQSTDLLSRLEQLVPEKRREVARun BLAST on NCBI transcript from alignment at scaffold_506:249526..262381+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=transcript|length=12856bp|location=Sequence derived from alignment at scaffold_506:249526..262381+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_506:249526..262381+ >TCONS_00069691 ID=TCONS_00069691|Name=TCONS_00069691|organism=Clytia hemisphaerica|type=CDS|length=13950bp|location=Sequence derived from alignment at scaffold_506:249526..262381+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069691 vs. Swiss-Prot (Human)
Match: CISY (Citrate synthase, mitochondrial OS=Homo sapiens GN=CS PE=1 SV=2) HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0 Identity = 297/439 (67.65%), Postives = 354/439 (80.64%), Query Frame = 3
Query: 495 AARCQSTQSTDLLSRLEQLVPEKRREVAEFRKAHNDTKIGEVNVGMAYGGMRGIKGLVTETSVLDPEEGIRFRGYSIPECQELLPRADGGNEPLPEGIFYLLLTGEIPTKEQVDAISKEWAARAELPQHVVMMLKNFPEDVHPMTQFATAIAALNKDSKFAKAYSEGVSKMDYWMYAYEDSVDLIAKLPVIAALIYRNLYKDGK-VAPINPDKDFGANLADMLGYDNPDFTELMRLYLVIHSDHEGGNVSAHTTHLVGSALSDPYLSLSAGMCGLAGPLHGLANQEVLVWLDKLTKEVGFDLTTDQMREYIRETLKKS-VVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKVVGQLYEVVPDELKALGKVANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLPSLVWDRAFGLPIERPKSMSTEGLMKM 1805
AAR S ST+L L L+P+++ + FR+ H T +G++ V M YGGMRG+KGLV ETSVLDP+EGIRFRG+SIPECQ+LLP+A GG EPLPEG+F+LL+TG IPT+EQV +SKEWA RA LP HVV ML NFP ++HPM+Q + A+ ALN +S FA+AY++G+S+ YW YEDS+DLIAKLP +AA IYRNLY++G + I+ + D+ N +MLGY + FTEL RLYL IHSDHEGGNVSAHT+HLVGSALSDPYLS +A M GLAGPLHGLANQEVLVWL +L KEVG D++ +++R+YI TL VVPGYGHAVLRKTDPRYTCQREFALKHLPNDP+FK+V QLY++VP+ L GK NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVL L+W RA G P+ERPKSMSTEGLMK
Sbjct: 22 AARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKF 460 The following BLAST results are available for this feature:
BLAST of TCONS_00069691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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