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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069686 ID=TCONS_00069686|Name=TCONS_00069686|organism=Clytia hemisphaerica|type=transcript|length=608bp
AAAAAGATGTCCTATTCACCAACGCTGTCAGCTAAATGATGGTGTATTGA
AGGTGAATCTGAAAGATGTTCAATTTGCTGGATATCTCTACATTCGAAGG
AAAGATGATGACCGAAATGTGTTACCAGAGATTGTCAACTTGACCAAGAG
TCATACTAGGGATGAAGGAAAACCCACATGTGTCCATATGGCAGAATCAC
CAAATTTGTTGACATTCATCCTTGGATTCCCAACCTTCAAAGAATTCAAT
CCTCAAACAAATCTAAAACCAATCAAGGAGGAGTTCAACATGGTCTTGAA
AAAGGATATCAAAGGGTGTTCAAAACATCGACAAGTGGTGttcaaaaaga
atcaaattttacATCCTGCTTCCGGAAGATGTGCTATAGTCaaagGTGAT
TCACCAGAAACGTTCACTGTTGTACTTGCATCAAGCACTTCCAATTGTGA
TCAAAACAATAGAAGAACCAGATTTCAATTTCGATCAGATGGTCGAATCG
TTTTCAATGATACTTATTGTCTCAACTACAAAGCCATCTACAGCTTTGCC
ATGTTCCGATTCGAGAAATGCATGGATAATTCGACAATTTATTTTAAGTT
CACAGACC Run BLAST on NCBI protein sequence of TCONS_00069686-protein >TCONS_00069686-protein ID=TCONS_00069686-protein|Name=TCONS_00069686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
KRCPIHQRCQLNDGVLKVNLKDVQFAGYLYIRRKDDDRNVLPEIVNLTKS
HTRDEGKPTCVHMAESPNLLTFILGFPTFKEFNPQTNLKPIKEEFNMVLK
KDIKGCSKHRQVVFKKNQILHPASGRCAIVKGDSPETFTVVLASSTSNCD
QNNRRTRFQFRSDGRIVFNDTYCLNYKAIYSFAMFRFEKCMDNSTIYFKF
TD Run BLAST on NCBI transcript from alignment at scaffold_506:107928..109893+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069686 ID=TCONS_00069686|Name=TCONS_00069686|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at scaffold_506:107928..109893+ (Clytia hemisphaerica)
AAAAAGATGTCCTATTCACCAACGCTGTCAGCTAAATGATGGTGTATTGA
AGGTGAATCTGAAAGATGTTCAATTTGCTGGATATCTCTACATTCGAAGG
AAAGATGATGACCGAAATGTGTTACCAGAGATTGTCAACTTGACCAAGAG
TCATACTAGGGATGAAGGTATGTACCGTCAGAAAATTGCCCAAAATTTCT
GCCTTGATGGgtaaaatatcctacaattttaTTCCCACTGGGATGACTTT
GCTTTCTCCCTCATTTGAAACTAAATGAAAAAGATTTCCATTGGTATTTC
GATTGAAATTTTCATACCCAATGAAGGAAAGAGTTCCACCGGTGTttaga
gacaggggtgttaatgTTCCATTTATGGATACACCCCTTTatcccgcatc
agtaagattctaTCGATTCTAACTCGgcaagcctcgccaccaatacggtt
ttactgaccctgtatatcccgtatcccacctcgagaagaccgtgtaacta
atagTATCAATTGTTGCATCAAAGTTTACACCATATCTTCGGCTGATTGG
AAAAGTAGGGTCAAtcgaatgaaaatattttttatcagatGCAACTTCTT
TAGAAACAGAGAAATTTTGTTTAAAGTTTTAGAACTTATATTTTCACATC
GTTCCCTGTTCACATAACATAGAATTAAACAGACAAAAAggaacctaatt
ttttaaaCCATTCTCAGGAAAACCCACATGTGTCCATATGGCAGAATCAC
CAAATTTGTTGACATTCATCCTTGGATTCCCAACCTTCAAAGAATTCAAT
CCTCAAACAAATCTAAAACCAATCAAGGAGGAGTTCAACATGGTCTTGAA
AAAGGATATCAAAGGGTGTTCAAAACATCGACAAGTGGTGttcaaaaaga
atcaaattttacATCCTGCTTCCGGAAGATGTGCTATAGTCaaaggttta
aatttttttcgattAAATATGAATGAAATTGGTGTCACGAAGAAGATGCT
TCAAtcattttctgtttttgtttgttcGTGCGCTTcttcattttaaaatt
tgatatattgAAAGTTTATAAGGGTCTTTTTATCAAATACAGTAAGCTGA
AAGTTGTTTGTTGATAGCCGCAAAAAAGTGCTCTTCAAAAAGGAGTCTTA
TAACAAAACTCAAGACTTCATTTTAGTAGAACTTAAAGTTTCATGTGAAA
AATCATCAGCTCCATACAAAATGataatttgttgaaaataatTCAAGTCG
TAGGGAGGTAGCCCAGGGGGGGTGCTTAGGCAAATTGAGGGTACTTtttg
tgccgcccttaagggtacctcaagtcccgctaagggtcggaaaaatagga
aactttcaactttttaccctctgaaggtcgaaatttggtcaaaattagtc
aaatttgtcccgcttaAGGTCGTAAagttcccaaaattttcctttgtttt
ctcctttttagtcccgataagggtccaaagttcgaaagtcgggcggcacc
ctcCGTTAGCTTGCAActctagtcccccccccccctcccggggACGTAAA
AAGACGTAAACTTATAATAAAGATTTTACACAAGAGAAACAAAGTAAATG
CTAAATTCTCAACGTTTCCTTAGTCTCTTTAggatattttcataatttta
acaTTATTTCTAGCCAGTAGGAGAGATGGATGCTCCGAAGAAGTAAACCA
AACTGTCAAAAATggattgaaatgaatttatcCCTGAATTTATTTCATCA
TAGGTGATTCACCAGAAACGTTCACTGTTGTACTTGCATCAAGCACTTCC
AATTGTGATCAAAACAATAGAAGAACCAGATTTCAATTTCGATCAGATGG
TCGAATCGTTTTCAATGATACTTATTGTCTCAACTACAAAGCCATCTACA
GCTTTGCCATGTTCCGATTCGAGAAATGCATGGATAATTCGACAATTTAT
TTTAAGTTCACAGACC Coding sequence (CDS) from alignment at scaffold_506:107928..109893+ >TCONS_00069686 ID=TCONS_00069686|Name=TCONS_00069686|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_506:107928..109893+ (Clytia hemisphaerica)
AAAAGATGTCCTATTCACCAACGCTGTCAGCTAAATGATGGTGTATTGAA
GGTGAATCTGAAAGATGTTCAATTTGCTGGATATCTCTACATTCGAAGGA
AAGATGATGACCGAAATGTGTTACCAGAGATTGTCAACTTGACCAAGAGT
CATACTAGGGATGAAGGAAAACCCACATGTGTCCATATGGCAGAATCACC
AAATTTGTTGACATTCATCCTTGGATTCCCAACCTTCAAAGAATTCAATC
CTCAAACAAATCTAAAACCAATCAAGGAGGAGTTCAACATGGTCTTGAAA
AAGGATATCAAAGGGTGTTCAAAACATCGACAAGTGGTGttcaaaaagaa
tcaaattttacATCCTGCTTCCGGAAGATGTGCTATAGTCaaagGTGATT
CACCAGAAACGTTCACTGTTGTACTTGCATCAAGCACTTCCAATTGTGAT
CAAAACAATAGAAGAACCAGATTTCAATTTCGATCAGATGGTCGAATCGT
TTTCAATGATACTTATTGTCTCAACTACAAAGCCATCTACAGCTTTGCCA
TGTTCCGATTCGAGAAATGCATGGATAATTCGACAATTTATTTTAAGTTC
ACAGACAAAAGATGTCCTATTCACCAACGCTGTCAGCTAAATGATGGTGT
ATTGAAGGTGAATCTGAAAGATGTTCAATTTGCTGGATATCTCTACATTC
GAAGGAAAGATGATGACCGAAATGTGTTACCAGAGATTGTCAACTTGACC
AAGAGTCATACTAGGGATGAAGGAAAACCCACATGTGTCCATATGGCAGA
ATCACCAAATTTGTTGACATTCATCCTTGGATTCCCAACCTTCAAAGAAT
TCAATCCTCAAACAAATCTAAAACCAATCAAGGAGGAGTTCAACATGGTC
TTGAAAAAGGATATCAAAGGGTGTTCAAAACATCGACAAGTGGTGttcaa
aaagaatcaaattttacATCCTGCTTCCGGAAGATGTGCTATAGTCaaag
GTGATTCACCAGAAACGTTCACTGTTGTACTTGCATCAAGCACTTCCAAT
TGTGATCAAAACAATAGAAGAACCAGATTTCAATTTCGATCAGATGGTCG
AATCGTTTTCAATGATACTTATTGTCTCAACTACAAAGCCATCTACAGCT
TTGCCATGTTCCGATTCGAGAAATGCATGGATAATTCGACAATTTATTTT
AAGTTCACAGACAAAAGATGTCCTATTCACCAACGCTGTCAGCTAAATGA
TGGTGTATTGAAGGTGAATCTGAAAGATGTTCAATTTGCTGGATATCTCT
ACATTCGAAGGAAAGATGATGACCGAAATGTGTTACCAGAGATTGTCAAC
TTGACCAAGAGTCATACTAGGGATGAAGGAAAACCCACATGTGTCCATAT
GGCAGAATCACCAAATTTGTTGACATTCATCCTTGGATTCCCAACCTTCA
AAGAATTCAATCCTCAAACAAATCTAAAACCAATCAAGGAGGAGTTCAAC
ATGGTCTTGAAAAAGGATATCAAAGGGTGTTCAAAACATCGACAAGTGGT
GttcaaaaagaatcaaattttacATCCTGCTTCCGGAAGATGTGCTATAG
TCaaagGTGATTCACCAGAAACGTTCACTGTTGTACTTGCATCAAGCACT
TCCAATTGTGATCAAAACAATAGAAGAACCAGATTTCAATTTCGATCAGA
TGGTCGAATCGTTTTCAATGATACTTATTGTCTCAACTACAAAGCCATCT
ACAGCTTTGCCATGTTCCGATTCGAGAAATGCATGGATAATTCGACAATT
TATTTTAAGTTCACAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069686-exon-scaffold_506-1491911889:107928..108094 | TCONS_00069686-exon-scaffold_506-1491911889:107928..108094 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1510915933:107928..108094 | TCONS_00069686-exon-scaffold_506-1510915933:107928..108094 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1575043694:107928..108094 | TCONS_00069686-exon-scaffold_506-1575043694:107928..108094 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1491911889:108645..108872 | TCONS_00069686-exon-scaffold_506-1491911889:108645..108872 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1510915933:108645..108872 | TCONS_00069686-exon-scaffold_506-1510915933:108645..108872 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1575043694:108645..108872 | TCONS_00069686-exon-scaffold_506-1575043694:108645..108872 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1491911889:109681..109893 | TCONS_00069686-exon-scaffold_506-1491911889:109681..109893 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1510915933:109681..109893 | TCONS_00069686-exon-scaffold_506-1510915933:109681..109893 | Clytia hemisphaerica | exon |
| TCONS_00069686-exon-scaffold_506-1575043694:109681..109893 | TCONS_00069686-exon-scaffold_506-1575043694:109681..109893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:107928..109893 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000772 | Ricin_B_lectin |
Blast
The following BLAST results are available for this feature:
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