|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069683 ID=TCONS_00069683|Name=TCONS_00069683|organism=Clytia hemisphaerica|type=transcript|length=3507bpRun BLAST on NCBI protein sequence of TCONS_00069683-protein >TCONS_00069683-protein ID=TCONS_00069683-protein|Name=TCONS_00069683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1082bp CTELKMTNSAMMDDHKDAHDNILEIQHKFTEICSNLNIESFITEQAWDEFRun BLAST on NCBI transcript from alignment at scaffold_505:141579..158372- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069683 ID=TCONS_00069683|Name=TCONS_00069683|organism=Clytia hemisphaerica|type=transcript|length=16794bp|location=Sequence derived from alignment at scaffold_505:141579..158372- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_505:141579..158372- >TCONS_00069683 ID=TCONS_00069683|Name=TCONS_00069683|organism=Clytia hemisphaerica|type=CDS|length=84474bp|location=Sequence derived from alignment at scaffold_505:141579..158372- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069683 vs. Swiss-Prot (Human)
Match: RBL1 (Retinoblastoma-like protein 1 OS=Homo sapiens GN=RBL1 PE=1 SV=3) HSP 1 Score: 555.444 bits (1430), Expect = 8.173e-178 Identity = 350/888 (39.41%), Postives = 509/888 (57.32%), Query Frame = 1
Query: 94 ICSNLNIESFITEQAWDEFRRINGNVTLEGNQMHWXXXXXXXXXXXX---XXXXGQNHAKNIPLSKLLFSVQMSLLHFFQKARKWLDMGRYGPKLNEKIEQLERNFSVSSIVFEKYSGIFKQVFQLDHVETIK--RGRKKHTV--SSKDIFVFCWTLYVRTKVRYPDITDDLVNSYHLLLCCIDLVFTNVVLLKQIKNCINSDFSGLPD---KEDLTVTDIPSISIIDVLCQLFEGLAIETKIIRRQYLGSLIEELIGNESLKGVSGHNAGLLDVANLEYNLKYLNDSYEEHITQVGDFDERIFVKEDSESHIGTPTK--RVTAFTEVDEKERSMVKRNLQEYFNTVKGFPPQTPLTGRQWLNAKEMQSKTEPQSIINSIARIQEIVKGLKPAPTDNLRNILKSFKENPESKLSDEITRLSNIFIEEYIKPSNKSSQNAQSNDFAKTRLSLALVLFYKILETFLEFEKKKSASADLSVLFENDIFVKSLLSCCLEIVIYSYNNSNRIFPWVLNAFKLKPYHFFKIIELVIRSED-LSRDVIKHLNRIEEQILDSLSWKTESPIYTS--ISSLGVPRCQDVSADNGIMT----------PLIFMSP-------------TTLRVGKDAIQGSPIISIPQKGVIPPPSPARRNLFGSAAK---------TAGE----TPSSTLTIXXXXXXXXXXXXXXXXXXXXXXLNKTTTAVVLPAKTMTPNVNPLPSTVRFPIMLH----SPGSSPVRFYALANKPGAQPK-SGIIRIQXXXXXXXXX-XXFGSLGIFFRKLYHMTYVRLKDLCEKLEIGVDLQKKIWTCFEHSVVENNDMMRDRHVDQLLMCAVYVMAKVTKDDKSFHEIMRCYRTQPQASSEVYRRVLIERFIR 2586
+C LN++ +A D+F I GN +LEG HWL CSLY++ KS ++ G + L+++L S ++SL+ FF K +KW+DM + E+IE+LERNF VS+++F+KY IF +FQ + E K R RK+ + S KD+F FCWTL+V TK + I DDLVNSYHLLLCC+DL+F N ++ ++ +N F GLP D T ++ P II VLC+L +GL +E K I+ Y I +L + LKG LLD+++ N K +N YEE++ VGDFDERIF+ D+E IGTP K R T ++ + + V+ NLQ++F + F P TPLTGR++L KE T S S++R+Q IV GLK AP+D L NI +S NP + + + F + Y + +++ Q DFA RL LA +L+YKILET + E ++ D+SVL E DIF +SL++CCLEIV+++Y +S R FPW++ L+P++F+K+IE+VIRSE+ LSRD++KHLN IEEQIL+SL+W +S ++ + +S+ VP C++V N T PL+ MSP +LR +D SP IS+ ++ P A+R LFG T G PSS++T + + T V +P + N P+ ++ S SPV A + GA PK + + + Q S K+ GSL +F+RK+YH+ VRL+DLC KL++ +L++KIWTCFE ++V D+M+DRH+DQLL+CA Y+MAKVTK++++F EIM+ YR QPQA+S VYR VL++ R
Sbjct: 24 LCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLACSLYVACRKSIIPTVGKGIMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKYEPIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFTASEEPP-CIIAVLCELHDGLLVEAKGIKEHYFKPYISKLFDRKILKG-----ECLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTRDTPLGKLTAQ--ANVEYNLQQHFEKKRSFAPSTPLTGRRYLREKE-AVITPVASATQSVSRLQSIVAGLKNAPSDQLINIFESCVRNPVENIMKILKGIGETFCQHYTQSTDE--QPGSHIDFAVNRLKLAEILYYKILETVMVQETRRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAY-SSPRTFPWIIEVLNLQPFYFYKVIEVVIRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEEVIFPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLR--RDMQPLSP-ISVHERYSSPTAGSAKRRLFGEDPPKEMLMDKIITEGTKLKIAPSSSITAENVSILPGQTLLTMATAPVT---GTTGHKVTIPLHGV---ANDAGEITLIPLSMNTNQESKVKSPVSLTA-HSLIGASPKQTNLTKAQEVHSTGINRPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHLDQLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPR 889 HSP 2 Score: 98.2117 bits (243), Expect = 1.617e-20 Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 2824 NDLIQFYNLVYIKKIKEFALKF--ASNKVTLDAPPLSPLPVTRRHNPSPKKLSKQHQVFISPIKPNIQMTPRSKMLYCFDSDSPKKLDEINRMIKGG---TRRRVNLDDPETGPSLAKRPM----NGLAKRAQELRHDQMN 3219
DLI+FYN +Y+ ++K FALK+ A+ +DAPPLSP P ++ SP+++S+QH ++ISP K +TPRS +LY F+ K L +IN MI+ G T++RV D + S AKR + L KR Q++ ++ N
Sbjct: 928 GDLIKFYNTIYVGRVKSFALKYDLANQDHMMDAPPLSPFPHIKQQPGSPRRISQQHSIYISPHKNGSGLTPRSALLYKFNGSPSKSLKDINNMIRQGEQRTKKRVIAIDSD-AESPAKRVCQENDDVLLKRLQDVVSERAN 1067 The following BLAST results are available for this feature:
BLAST of TCONS_00069683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.