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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069682 ID=TCONS_00069682|Name=TCONS_00069682|organism=Clytia hemisphaerica|type=transcript|length=1880bpRun BLAST on NCBI transcript from alignment at scaffold_505:141579..147780- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069682 ID=TCONS_00069682|Name=TCONS_00069682|organism=Clytia hemisphaerica|type=transcript|length=6202bp|location=Sequence derived from alignment at scaffold_505:141579..147780- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069682 vs. Swiss-Prot (Human)
Match: RBL2 (Retinoblastoma-like protein 2 OS=Homo sapiens GN=RBL2 PE=1 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 4.565e-46 Identity = 136/352 (38.64%), Postives = 180/352 (51.14%), Query Frame = 3
Query: 51 KHLNRIEEQILDSLSWKTESPIYTSI--SSLGVPRCQDV-------SADNGIM--TPLIFMSPTTLRVGKDAIQGSPIIS---IPQKGVIPPPSPARRNLFG-----SAAKTAGETPSSTLTIXXXXXXXXXXXXXXXXXXXXXXLNKTTTAVVLPAKTMTPNV------NPLPSTVRFPIMLHSPGSS--------PVRFYALANKPGAQPKSGI-------IRIQ-------------XXXXXXXXXXXFGSLGIFFRKLYHMTYVRLKDLCEKLEIGVDLQKKIWTCFEHSVVENNDMMRDRHVDQLLMCAVYVMAKVTKDDKSFHEIMRCYRTQPQASSEVYRRVLIE 947
KHLN+IEEQILD L+WK ESP++ I + VP C++V AD + +PL T +R + G I S + + PP S RR LF S T G P L ++A P N P Q+L TA V T + N FP+ ++ G + P+ ALA +Q +G + IQ + S S +K SL +FFRK+YH+ VRL+DLC KL+I +L+KKIWTCFE S+++ ++M DRH+DQLLMCA+YVMAKVTK+DKSF IMRCYRTQPQA S+VYR VLI+
Sbjct: 584 KHLNQIEEQILDHLAWKPESPLWEKIRDNENRVPTCEEVMPPQNLERADEICIAGSPLTPRRVTEVRADTGGL-GRSITSPTTLYDRYSSPPASTTRRRLFVENDSPSDGGTPGRMPPQPL-VNAVPVQNVSGETVSVTPVPGQTLVTMATATVTANNGQTVTIPVQGIANENGGITFFPVQVNVGGQAQAVTGSIQPLSAQALAGSLSSQQVTGTTLQVPGQVAIQQISPGGQQQKQGQSVTSSSNRPRKTSSLSLFFRKVYHLAAVRLRDLCAKLDISDELRKKIWTCFEFSIIQCPELMMDRHLDQLLMCAIYVMAKVTKEDKSFQNIMRCYRTQPQARSQVYRSVLIK 933 HSP 2 Score: 100.523 bits (249), Expect = 8.721e-22 Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 3
Query: 1197 NDLIQFYNLVYIKKIKEFALKFASNKVTLDAPPLSPLPVTRRHNPSPKKLSKQHQVFISPIKPNIQMTPRSKMLYCFDSDSPKKLDEINRMIKGGT----RRRVNLDDPETGPSLAKRPMN--GLAKRAQELRHDQ 1586
DLIQFYN +YIK+IK FA+K++ + +DAPPLSP P R +P +LS+ H V+ISP K ++PR K+ Y F + K+L EIN MI+ G +R + L+D P+ P N L +R Q++ +D+
Sbjct: 1003 GDLIQFYNNIYIKQIKTFAMKYS--QANMDAPPLSPYPFVRTGSPRRIQLSQNHPVYISPHKNETMLSPREKIFYYFSNSPSKRLREINSMIRTGETPTKKRGILLEDGSESPAKRICPENHSALLRRLQDVANDR 1136 The following BLAST results are available for this feature:
BLAST of TCONS_00069682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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