TCONS_00069680 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069680
Unique NameTCONS_00069680
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069680 ID=TCONS_00069680|Name=TCONS_00069680|organism=Clytia hemisphaerica|type=transcript|length=408bp
GCCTTTTGGTGGCTTCAAACACTGCTGACAAGACATGTGAAAATCTCATT
GCACCAAAAAACGGATCTGTCACATACATACATCTGTCACGGCATTTAAA
GCTTGCACAAATGTCATGCAAATACGGTTACAAACCAAGCCAAAGGGTTC
CTTTTATATTTGTTTGTGATAAAGGCCAGTGGGTGGACCCATCTTCTGGC
GCTACACCAAAGGTTTATACAAGCCTTCCAGACTGTATCCCTGAGTAATG
GATTTAAGACAGTAAGACAGATtgtaaaattattattttttgtaatattt
tacaatattttaacTTTAAGAAAATTCAAAGCTTACACTattcttgaatg
tttttttctcgCAATTCAAACCCTCTTCTCTCAATGATTGGGATATGGTT
GCTCTACG
Run BLAST on NCBI

transcript from alignment at scaffold_505:112415..117933-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069680 ID=TCONS_00069680|Name=TCONS_00069680|organism=Clytia hemisphaerica|type=transcript|length=5519bp|location=Sequence derived from alignment at scaffold_505:112415..117933- (Clytia hemisphaerica)
GCCTTTTGGTGGCTTCAAACACTGGTAAGTTTCGACTCTACTGTTACAAG
CAGGGGCCTATTAGCCTTCACAAAAACTCGTGTTAAGTTTTTAACCATGT
TTTCTTGGAAAGTTTGCTTTCGAGTCTTTGTAAAATAATCTGCGATTTAT
GTTGTGTTGTTTCTTGGGACCAAAACCCGGGGGGAGTTACTTGGGCCAAA
CAGGGGTACGGGGATGTGCCGCTGGTCAGAGTACCTTTTTCCATCCCCCG
GTGACCCCCTGGTACGAAAAAACACCAAAATTGAAAAATTAAGTCCCCCG
TAGGGTACCTTTTTGGGGAATTTGGAAAAAACTTGGAAAATTTTGAGAAT
TTTGTGAAATTCCAATCCTATTCAAATGGTCACTTTATTACGAGTCCCAC
ATTGGGTCCATTTTTCGAACTTCAGTGGCACACCCTCGTCGATCGGCAAG
GGTAAAGAACCTTCCTATGTAAAAAAAAAAACATTTTACTTTCATTTATA
GCTGACAACAACATATGCAACAACATGCCACCGCCGAAGAATGGGGTTGC
CATATATCACGCATACCATAGAATTGTAAATGAAATGTGATGTTGGATAC
ATACCAAACAAAAATGTTTTTCTATTTGTTTGTAAGAACGGTCAATGGAT
CGATGCCGTAACTTTAGCTGTTTATACAACTTTTCCGGATTGTATCCCTT
TATAATGAACTTTTATTATTTTTTAACGCGAGACAAAATTGACTTCTTGT
TCTACGGGCTCAGTTGAAAGCGAAAAAAAAAATCAAATTTGGTAAGATAG
AAATTTGACTTTTAATTCGTCATTTAAATAAATGCGAGAGATTGAAAAGG
TCAAAATAATTGTAGAACATTGAACTAAATTTGTGTCTCGCCTAGATATG
AAAAAAGATAAGAATATATCATTTTACATTTCTGTGTTCTTTACTTTGTA
ACACCCATCATCGGTCATAGGCAGATTGTCTTGACTCGACTTATATTTAG
CCAAAATGGGCTAAATCCGGATCCTGTTTTGTTTTCACCAAAATTAGTTA
TCACCAAAATTAAAAAAAATGCTGGCCTGCAAAAATAAGTTCTTGCCAAA
ATTAAATTTTTCATTTCTTCTTTTTTGCTACTCGCAATAACTACTTTCGA
CAAAATTAGTTCCCTCAACGTATTCCACTGCATTTCAAAATTCATTCTAA
TTTCTAACACAACATGTTAAAATTCTATAACTCAGAATTTCAAGTACTAA
AACCGATTATTACACAACTACTTAAGTTCAGGAAATTCAACTACTTTAGT
TCAGGAAATTCCTTAAAGAACCCCGTGCTTGAAAGTCCCCCCTACATATG
AGACTTAATAGCTGTTCAATTACCTATGAACGTGCTTCCCGTTCCTTCAA
GTTCCCGAGATAACGGTTTAAAAGTGGCCTTTCTTTCCACTTTCTTAAAG
ATTTCTATATGTCAAGGTGGCGTCAAATCAGTCCACGGAATATGCCTTAT
CTATGGAAGAAAGGTCAGTGCACATAAATTTCCAAATTCTGTCGCGATCT
TTTCAAACCGTCACAATATTTTTTAAGCTGTCGAGATATTCTTCAAGCTG
TCGCGTTTCAGGAAACTGTCGCGATGTTTTTCAAGCTGATGTGTTTACAG
AAACTTTCGCGATAATTTTCTAACTATCGCAATATTTTCAAGCTGTCGCG
ATAATTTTCGAGCCTGTCGCGATAATTTTTCGAGCTGTCGCGATATTTTT
CAAGCTGTCGCGTTTCCAGAAGATGTTGCGTTTTCNAGCAATTAATCGTT
AATTGCATCCTGTAGAGAGCAATTAATCGTTAATCACACTCTTCAATGCT
GCGCCAATGTTTACAAAAATGATTTTAATGTTTTTCTTACATTTCTTTTG
CATCGAACGTTTTAATTGCATTCGAAATTCATTTTGTGAGAAAGAAAATC
AATAAACGACAATAAAAGAAAGACACAGAGAGAAGAGAAAAATATAAAAC
TCTCAGTGTAATTTTTGTAATATACTTTCCTAACTGGGAAAAAGTAGTGG
AAGCCATTGTGCGATTAGCTCGTAATCACATAATATCTCGTACAATTCGA
AAATTGCACTCGTGATTTTTTTGTTTCGAATTTTCCTCGTCCTTTCAGAC
TCGGAAAATTAATAACAAAAAAATCACTCGTGCAATTATATTCGAATTGC
ACTCGTTATCATGTGATTACATATACTAACTCGTCATTTAAATAAATGCG
AGAGATTGAAAAGGTCAAAATAATTGTAGAACATTGAACTAAATTTGTGT
CTCGCCTAGATATGAAAAAAGATAAGAATATATTCTTTTACATTTAAATT
TTAAAAATTATCAAAATTCTGTGTTCTTTACTTTGTAACACCCATCATCA
GTCATAGGCAGATTGTCTTGACTCGACTTATATTTAGCCAAAATGGGCTA
CATCCGGATCCTGTTTTGTTTTCACCAAAATTAGTTATCACCAAAATTAA
AATAATTGCTGGCCCGCAAAAATTAGTTTTATTTCTATTTTTTTTGATAC
TCGCAATAATTACCTTCGACAAAATTAGTTCCCTCAACGTATTCCACTGC
ATTTCAAAATTCATTCTAATTTCTAACACAACATGTTAAAATTCTATAAC
TCAGAATTTCAAGTACTAAAACAATTATCATACAACTACTTTAGTTCAGG
AAATTCAACTACTTTAGTTCAGGAAATTCCTTAAAGAACCCCGTGCTTGA
AAGTCCTCCTACATATGAGACTTAATAGCTGTTCAATTACCTATGAACGT
GCTTCCCGTTCCTTCAAGTTCCCGAGATAACGGTTTAAAAGTGGCCTTTC
TTTCCACTTTCTTAAAGATTTCTATATGTCAAGGTGGCGTCAAATCAGTC
CACGGAATATGCCTTATCTATGGAAGAAAGGTCAGTGCACATAAATTTCC
AAATTCTGTCGCGATCTTTTCAAACCGTCACAATATTTTTTAAGCTGTCG
AGATATTCTTCAAGCTGTCGCGTTTCAGGAAACTGTCGCGATGTTTTTCA
AGCTGATGTGTTTACAGAAACTTTCGCGATAATTTTCTAACTATCGCAAT
ATTTTCAAGCTGTCGCGATAATTTTCGAGCCTGTCGCGATAATTTTTCGA
GCTGTCGCGATATTTTTCAAGCTGTCGCGTTTCCAGAAGATGTTGCGTTT
TCAGAAACTGTCGCGTTTTCATGTGTATTCGTGTCAGGGAATCCTTTTTG
TCGTTGTTTAACCTCGTTGTATCAAGCATATGTGTGGTCATGATGTTGGA
GGAATTTTCTATGGTAACTGTGGTACAACAAAACGAAATTTTGTTTACAA
TAATATAAGATATTCACGTGAGCCTGTATAAAATGGTGATTCTGACTCAC
GCAATTCCCTTGATTTCTCGCCATTACGTCATCACTAAGCCTGTACTATA
TGCCTGTGGGTGAAAGGGGTGTATTTTGTACATTTTGAATCTTTTTGGAA
ACTCGACAGCTTGAAAAATATCGCGACACCTTCTGGAACGCGACAGTTTT
TGAAAATGTGACCTTTGCGCGCTGACCCTTCTCGGCTTCCATACTTATCT
ACTTGTTTGTGTAAAAAAATAATGAAAAGGCCAAATGAGATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CCCGGAGCAAAACAAATACGCTTAGATAAGATAATAGGCATTTAAAATCC
ATACAGGGGGTGGACGAACCAGAAAAACAAAATTTTTCAAGCAAAACAAT
AATTCTTAAAATTGTGTGGTTACCCCCTAAAAAAGGCAAAATTTTCAAAA
AATCCTTGGAAAAATTCTTAAAAATGAGGGTGGAAAAGATGAAATCAATG
TCAAATTTTCCAGTGACCTGAAATTATAAGATATTATGCCCAGTAGGGAC
GAAGTTTTGGTAAAAATTACCAATGGCACAGAGGCCCCATCGGGGGTGTA
GTTGATCATGGAAATAATTGAAAAATTAAAAACAAAAGTCTAATATTTCT
ACCAACAGAGTTAAATATTTGTTTCAGTTTTTTTGTAAGCTCAGCTTCCC
TACATATTTTCTCTTACAACTATGCGAAATTTGAAACCCTTTGATGATCC
GGTATGGTTAGAGAAAATTAAAACCTTATTTTCATAGATTGACCTTTCAG
AAAACCATTGATTGGACCTCGAACCTTTGTTCCCGATCCATAAATTATAG
CACGGCAGGACGCTTCGAATATCCAAAGATTTGACCAGCTGTTTTACTAT
TAACTTGCCCACGAACTTTTGAATATTGTTGATCTGATGAATATTTACAT
AGTATTATAATACAAACGACCACAAATCTTTACTGCTTGAGCATGCCATG
GTTTTTATAAATAATCCCATAAAAGGCAGCGAAATATTGATGGAAGTCCT
CCACCAGTGGTAGTTAAAAGCAAACAATTTTTCACTATTTAAAAGGAAGA
TGGTCCAATACTTCTCCATTCGAAAGACATAACTTTGATTACATAGCACA
AAAGACTTGACCTTACAAGATGTTTTTAGCTTTCTTTCTGATAAGTTGCT
TTTTGGTGGCTTCAAACACTGGTAAGTTTTTTCTTCTGATAGAAATTCCT
TCACCTTAAAGCCTAGTCAATTCGTATAGATCTACCCTGAAGATTAGCTT
GATACACCCCTGTGTCACAGACCCGGTGGACCCCCCACCCCGGTGGAAAA
ATAGGTCAAAAAATCGTCCCCGGTGGAAAAAATATCCTACAATTTCAACC
CCACTGCGAAATTGCTCTACGATTTTATCCCCATTGAAAACTGAATGTAA
AAAATTGCACTCCAAAGCCATCCCCACTGGAATTTCCGAGCTGGAAACAA
TAGATCTTCTATCCCCATTGGCATTTTGATATAAATTTTCATCCTCACTG
AGGGAAAAAGTTCTACCGGGGCATTGAGACAGGGGTGTCTTGATGTTAAC
GATCAAAGTCCTATCAAGGCTTTTTTTTCCTTCAATTAACTACACTATTA
TCGTAAGCTCATTTTAAATTATGCTTTTCGCTAGAATGTTAAGCTAACGA
AACCTTTAATTTTCAATAACTTCTTTCTTTCACAGCTGACAAGACATGTG
AAAATCTCATTGCACCAAAAAACGGATCTGTCACATACATACATCTGTCA
CGGCATTTAAAGCTTGCACAAATGTCATGCAAATACGGTTACAAACCAAG
CCAAAGGGTTCCTTTTATATTTGTTTGTGATAAAGGCCAGTGGGTGGACC
CATCTTCTGGCGCTACACCAAAGGTTTATACAAGCCTTCCAGACTGTATC
CCTGAGTAATGGATTTAAGACAGTAAGACAGATTGTAAAATTATTATTTT
TTGTAATATTTTACAATATTTTAACTTTAAGAAAATTCAAAGCTTACACT
ATTCTTGAATGTTTTTTTCTCGCAATTCAAACCCTCTTCTCTCAATGATT
GGGATATGGTTGCTCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043386XLOC_043386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069680-exon-scaffold_505-1575043694:117910..117933TCONS_00069680-exon-scaffold_505-1575043694:117910..117933Clytia hemisphaericaexon
TCONS_00069680-exon-scaffold_505-1575043694:112415..112798TCONS_00069680-exon-scaffold_505-1575043694:112415..112798Clytia hemisphaericaexon
TCONS_00069680-exon-scaffold_505-1510915933:117910..117933TCONS_00069680-exon-scaffold_505-1510915933:117910..117933Clytia hemisphaericaexon
TCONS_00069680-exon-scaffold_505-1510915933:112415..112798TCONS_00069680-exon-scaffold_505-1510915933:112415..112798Clytia hemisphaericaexon
TCONS_00069680-exon-scaffold_505-1491911889:117910..117933TCONS_00069680-exon-scaffold_505-1491911889:117910..117933Clytia hemisphaericaexon
TCONS_00069680-exon-scaffold_505-1491911889:112415..112798TCONS_00069680-exon-scaffold_505-1491911889:112415..112798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_505supercontigscaffold_505:112415..117933 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.201858	0.394973	0	0	0	0	0	0	0	0	0	5.4694	0.3037	0	0	0	0	0	0.906604	0	0	0	0	0	1.1919	0.489356	0.693129	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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