TCONS_00069662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069662
Unique NameTCONS_00069662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069662 ID=TCONS_00069662|Name=TCONS_00069662|organism=Clytia hemisphaerica|type=transcript|length=700bp
GTTAACGCATCGGGAGCTTGCTTTTCTATTTTGGTAAGGAACATTAGACA
gctttatgtatcggaggatatcgagggtgACGGTAAGTCgacgcaaaaca
aagtcgatagttgatgtacggctatttatcgcctttgctcactaggctgg
agtcgtttataatgaaTCTAATACAGTAGTAGTATACTATAGATtagatt
attgttacgggatttagtttatATAAACTGAAATTGttcctccattactt
tttgctttatttctttattgtttgaattagtcgtctagcttgcagACTAT
CGCTCACCAAAAtagacggtattttggtgtttttaccatCGTCGAGCAAA
GGGGACGTTGATTTTAGTGACGCaagtcaactttgctttataacTTCTCA
TTTGCTTTATCTCGAATACAAAAACTCGCTGTTACTTGGGATTGGGATAC
AAAGATGCACGTTTTCATAAGAACTTCAGCCAGTTGGataaagtatttca
aaattgttgAGAGGGACTTTGAATTATATTACTTACAGCTCACTGACATT
GGaagattttaataattttaGACTTTTCTACAGCTTCAAATTCACTGTCA
CTTTATTCCCATAGAGGGGACCAAATAAATATAAAGTTCCGTTGTcgctt
atttttgtttttaacttgttactattttgagatttttcattaaaattcag
Run BLAST on NCBI

transcript from alignment at scaffold_503:268321..269020

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069662 ID=TCONS_00069662|Name=TCONS_00069662|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at scaffold_503:268321..269020 (Clytia hemisphaerica)
ctgaattttaatgaaaaatctcaaaatagtaacaagttaaaaacaaaaat
aagcgACAACGGAACTTTATATTTATTTGGTCCCCTCTATGGGAATAAAG
TGACAGTGAATTTGAAGCTGTAGAAAAGTCtaaaattattaaaatcttCC
AATGTCAGTGAGCTGTAAGTAATATAATTCAAAGTCCCTCTcaacaattt
tgaaatactttatCCAACTGGCTGAAGTTCTTATGAAAACGTGCATCTTT
GTATCCCAATCCCAAGTAACAGCGAGTTTTTGTATTCGAGATAAAGCAAA
TGAGAAgttataaagcaaagttgacttGCGTCACTAAAATCAACGTCCCC
TTTGCTCGACGatggtaaaaacaccaaaataccgtctaTTTTGGTGAGCG
ATAGTctgcaagctagacgactaattcaaacaataaagaaataaagcaaa
aagtaatggaggaaCAATTTCAGTTTATataaactaaatcccgtaacaat
aatctaATCTATAGTATACTACTACTGTATTAGAttcattataaacgact
ccagcctagtgagcaaaggcgataaatagccgtacatcaactatcgactt
tgttttgcgtcGACTTACCGTcaccctcgatatcctccgatacataaagc
TGTCTAATGTTCCTTACCAAAATAGAAAAGCAAGCTCCCGATGCGTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043377XLOC_043377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069662-exon-scaffold_503-1491911889:268321..269020TCONS_00069662-exon-scaffold_503-1491911889:268321..269020Clytia hemisphaericaexon
TCONS_00069662-exon-scaffold_503-1510915933:268321..269020TCONS_00069662-exon-scaffold_503-1510915933:268321..269020Clytia hemisphaericaexon
TCONS_00069662-exon-scaffold_503-1575043694:268321..269020TCONS_00069662-exon-scaffold_503-1575043694:268321..269020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:268321..269020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144512	0.211383	0.0818121	0.240121	0	0.153999	0	0	0.243555	0.0754206	0.512436	0.0962443	0.0961105	0.149718	0.205147	0.0880617	1.30182	1.55671	0	0.241128	1.18764	0.511138	0.745627	0.753203	0.232735	0.276947	4.65664	4.65248	1.84457	2.20616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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