TCONS_00069660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069660
Unique NameTCONS_00069660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069660 ID=TCONS_00069660|Name=TCONS_00069660|organism=Clytia hemisphaerica|type=transcript|length=597bp
AGTATTCTTTTAACAAAGTGACTAAAACAAATATGTACTTTTCGCGTTTA
TTAATCGCGCGAAAATTGATCGAAAGAAATTTGAATCACCCAGACAAAAC
ATATGAGGGATGTCTGAAAGATAATTAAAAAGAgagtgaaaaatgatttg
aaaacaaaattgaagtatTCATAGTAAATTGATAAGGTGAAATCAAGAAA
AGCTTGGGTAATtaattatcataattatctcaattatatttttgaaaagt
ctgcCTTATATTGTCACCTTCTCACTTGGGAAAAGTTGATTATTAAATTA
GCTGGCGTACTGTGTTTTCACCACACGACTAAATGGACAGCTTTTGATGT
GTACCGCATAAAATAATAATGAAGGAGAGGAGCATACGTGTGCTTTGTTT
CTCTTTACTTTGTCTGAACGGTCATGTCGAAACTGTCAGCTTTTCTCCGG
TCAGATTGATGTTAGAATAAATACAGATTTCTTCAAGTGTTCTTTGGAGT
GACACTTGAAATCATTCTACTGCGCTTTTCAAGTTTCTCACTATTTTaat
gttgattttttgaaatcaaagggTTATATTTTAACCcccttttttgt
Run BLAST on NCBI

transcript from alignment at scaffold_503:253831..254427

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069660 ID=TCONS_00069660|Name=TCONS_00069660|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at scaffold_503:253831..254427 (Clytia hemisphaerica)
acaaaaaagggGGTTAAAATATAAccctttgatttcaaaaaatcaacatt
AAAATAGTGAGAAACTTGAAAAGCGCAGTAGAATGATTTCAAGTGTCACT
CCAAAGAACACTTGAAGAAATCTGTATTTATTCTAACATCAATCTGACCG
GAGAAAAGCTGACAGTTTCGACATGACCGTTCAGACAAAGTAAAGAGAAA
CAAAGCACACGTATGCTCCTCTCCTTCATTATTATTTTATGCGGTACACA
TCAAAAGCTGTCCATTTAGTCGTGTGGTGAAAACACAGTACGCCAGCTAA
TTTAATAATCAACTTTTCCCAAGTGAGAAGGTGACAATATAAGgcagact
tttcaaaaatataattgagataattatgataattaATTACCCAAGCTTTT
CTTGATTTCACCTTATCAATTTACTATGAatacttcaattttgttttcaa
atcatttttcactcTCTTTTTAATTATCTTTCAGACATCCCTCATATGTT
TTGTCTGGGTGATTCAAATTTCTTTCGATCAATTTTCGCGCGATTAATAA
ACGCGAAAAGTACATATTTGTTTTAGTCACTTTGTTAAAAGAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043375XLOC_043375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069660-exon-scaffold_503-1491911889:253831..254427TCONS_00069660-exon-scaffold_503-1491911889:253831..254427Clytia hemisphaericaexon
TCONS_00069660-exon-scaffold_503-1510915933:253831..254427TCONS_00069660-exon-scaffold_503-1510915933:253831..254427Clytia hemisphaericaexon
TCONS_00069660-exon-scaffold_503-1575043694:253831..254427TCONS_00069660-exon-scaffold_503-1575043694:253831..254427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:253831..254427 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.10353	0	0.86316	0.4872	0	0.110056	0.0770526	0.286326	0.185277	0.426278	1.33787	1.70516	0.882661	0.445755	0.0686418	0	0.0972001	0	0	0	0.10484	0	0	0	0.626895	0.669039	0.811908	0.310202
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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