TCONS_00069657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069657
Unique NameTCONS_00069657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069657 ID=TCONS_00069657|Name=TCONS_00069657|organism=Clytia hemisphaerica|type=transcript|length=559bp
CAAACGAACCAATCAAATTCTACCATTTATCACgtaatgattttgatgaa
aataacaaCCCATGCGACTACCTACGTCAAGGAAATATTTTAGTTGCATC
GCGAAATTACGTATCAGGTTTCGAATGTCCTGTGGTTATTTACGAAAACG
ATCAAACGACGCGAGAAAACCTTGAACACCACGAATGTAATATTTCTATG
CGATGTACAACACAGCTTATTATCGTTGGTCAAAACAACGATTCTTCTCA
AGCTTTAGCATATTTTAAGATTGCCAACCTCCTTCAGCATTCAGTGGAAG
ATAGCGCACTTTTAAGCCAGTTTAAGGTTTTGACGATGAATTACATAATT
GACTATGTGAAACATTTTGCACGTCGAGATATTCTAACTAATATTTTACA
CATTCTTAAAATTACTCTTGAAGACTTGACCGATGGATTCGATGAAAAGA
ACTTTTCTGCAGCATCTACCTCCAAAGTTTTACATGAATTTCTGACATTT
ATCGTTGATGATCTAGTGGAGGAGCAATCGTCAAAAGAGGATTTCAGCcc
aaaaacttt
Run BLAST on NCBI

protein sequence of TCONS_00069657-protein

>TCONS_00069657-protein ID=TCONS_00069657-protein|Name=TCONS_00069657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
NEPIKFYHLSRNDFDENNNPCDYLRQGNILVASRNYVSGFECPVVIYEND
QTTRENLEHHECNISMRCTTQLIIVGQNNDSSQALAYFKIANLLQHSVED
SALLSQFKVLTMNYIIDYVKHFARRDILTNILHILKITLEDLTDGFDEKN
FSAASTSKVLHEFLTFIVDDLVEEQSSKEDFSPKT
Run BLAST on NCBI

transcript from alignment at scaffold_503:187376..187934

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069657 ID=TCONS_00069657|Name=TCONS_00069657|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at scaffold_503:187376..187934 (Clytia hemisphaerica)
aaagtttttggGCTGAAATCCTCTTTTGACGATTGCTCCTCCACTAGATC
ATCAACGATAAATGTCAGAAATTCATGTAAAACTTTGGAGGTAGATGCTG
CAGAAAAGTTCTTTTCATCGAATCCATCGGTCAAGTCTTCAAGAGTAATT
TTAAGAATGTGTAAAATATTAGTTAGAATATCTCGACGTGCAAAATGTTT
CACATAGTCAATTATGTAATTCATCGTCAAAACCTTAAACTGGCTTAAAA
GTGCGCTATCTTCCACTGAATGCTGAAGGAGGTTGGCAATCTTAAAATAT
GCTAAAGCTTGAGAAGAATCGTTGTTTTGACCAACGATAATAAGCTGTGT
TGTACATCGCATAGAAATATTACATTCGTGGTGTTCAAGGTTTTCTCGCG
TCGTTTGATCGTTTTCGTAAATAACCACAGGACATTCGAAACCTGATACG
TAATTTCGCGATGCAACTAAAATATTTCCTTGACGTAGGTAGTCGCATGG
GttgttattttcatcaaaatcattacGTGATAAATGGTAGAATTTGATTG
GTTCGTTTG

Coding sequence (CDS) from alignment at scaffold_503:187376..187934

>TCONS_00069657 ID=TCONS_00069657|Name=TCONS_00069657|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_503:187376..187934 (Clytia hemisphaerica)
agtttttggGCTGAAATCCTCTTTTGACGATTGCTCCTCCACTAGATCAT
CAACGATAAATGTCAGAAATTCATGTAAAACTTTGGAGGTAGATGCTGCA
GAAAAGTTCTTTTCATCGAATCCATCGGTCAAGTCTTCAAGAGTAATTTT
AAGAATGTGTAAAATATTAGTTAGAATATCTCGACGTGCAAAATGTTTCA
CATAGTCAATTATGTAATTCATCGTCAAAACCTTAAACTGGCTTAAAAGT
GCGCTATCTTCCACTGAATGCTGAAGGAGGTTGGCAATCTTAAAATATGC
TAAAGCTTGAGAAGAATCGTTGTTTTGACCAACGATAATAAGCTGTGTTG
TACATCGCATAGAAATATTACATTCGTGGTGTTCAAGGTTTTCTCGCGTC
GTTTGATCGTTTTCGTAAATAACCACAGGACATTCGAAACCTGATACGTA
ATTTCGCGATGCAACTAAAATATTTCCTTGACGTAGGTAGTCGCATGGGt
tgttattttcatcaaaatcattacGTGATAAATGGTAGAATTTGATTGGT
TCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043372XLOC_043372Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069657-proteinTCONS_00069657-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069657-exon-scaffold_503-1491911889:187376..187934TCONS_00069657-exon-scaffold_503-1491911889:187376..187934Clytia hemisphaericaexon
TCONS_00069657-exon-scaffold_503-1510915933:187376..187934TCONS_00069657-exon-scaffold_503-1510915933:187376..187934Clytia hemisphaericaexon
TCONS_00069657-exon-scaffold_503-1575043694:187376..187934TCONS_00069657-exon-scaffold_503-1575043694:187376..187934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:187376..187934 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358122	0	0.79034	0.245676	1.6948	0.667702	0.912245	1.09804	0.099112	0.533862	0.924267	0.135017	1.9322	1.29429	0.172675	0.394748	0.456566	0.389971	2.5347	2.16396	0.675182	0.286822	0.116223	0.373265	0	0.291387	0.167107	0	0.337522	0.134816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top