TCONS_00069648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069648
Unique NameTCONS_00069648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069648 ID=TCONS_00069648|Name=TCONS_00069648|organism=Clytia hemisphaerica|type=transcript|length=1524bp
GTAAAGATAAGGTTTGATGTCTGGAAAAAGATATCCAATAGAAATAATAA
ATCAACATATTTGAAATACCACATCAACTTGATAGAACCGTCAAAATTAT
TTAGGATACGTTATTTGAAAACATACGAAGATACTGTACTTATTATAAAC
AAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTCGGAAAGCTCA
TAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCATCATTATTAA
GAAGATACAcaagaaaaagttttgaagaGGATTATATGCCGACTGTATTT
GATTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAAGT
TAACATCTGGGATACATCAGGCTCTGGAGAATACGACCATGTCAGACCAT
TATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAA
TCAACAACTTTAGAAAATATACAAAGAAAATGGTTGCCAGAGATTCGCCA
GCGTCACGCCGACAGACCCATTATCTTGGTTGGATGCAAAAGTGATCTGA
AAGCTGACCAGAAACTTACAAATATCCACAAACGATTAGTGCTGTCAAGC
CAGGGTTTGTTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATG
TAGCAGTAAAGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAA
CTGCAGCCATGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACat
cgaattaaatttgataaaaagaagaacaaagcATACGAGAAATGCACCAT
TTCGTGAATATGTAGAATATTGGTGAACAAGCTAGTTTGAAGAAGATGAG
CTGGAGACAGTAGGAAGAATGATGGTGGTAGCAGCTTCTCGTAACCTTGC
GTCGACTCGTCTTTTCTTGTCTGAGCATTATTTTGGTCATTGGTTGCCCA
TCTgacacacaacgtcgtttcaacgtttttctgaTATTCAAAAcgcccat
ataacgttagatgaacgttgaaacaacgttgtgtgtcattGGTTGTCGCT
ATTTCTACCAGAATCAataattttcaatggaatttacCAAACATTACCCA
AAGATGACTCAATATACATGTTATGGTGGTAATGAAGaatttactaattt
gaagcgACTAACAGCTCGAGTTTTACTGATTATGTAGCATTACTCAAATG
TCATTTATGTCATATTTTGACATTATATTGAAATAGAATTCAGATGCCCA
ATGTGACTTTTATGGGTTCGATGGATTCGGCAAACCAGTTATTTGCATCA
ATCTTGGTTGTAAAACTGGTAACTAAAGAGATCAAacctttgataaaaat
atcagagtaattttgatgctttagaattaatttctttttttaaataaaga
tgCTTTGTAAATATTATATACTAAGCGCAAACTCTTTCGTTTTAGAAAGA
TCTTTGTAACATGTAATTATCCAAATTATGAAGATATGAATACAGAATGA
TCTAAccatgaaattttgctgact
Run BLAST on NCBI

transcript from alignment at scaffold_503:249810..255735-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069648 ID=TCONS_00069648|Name=TCONS_00069648|organism=Clytia hemisphaerica|type=transcript|length=5926bp|location=Sequence derived from alignment at scaffold_503:249810..255735- (Clytia hemisphaerica)
GTAAAGATAAGGTTTGATGTCTGGTCGGTAATTTTTTCAAAATTTTAGCG
AGTTTCTCGACATGTGTTATTTTGACGTATTTTGATATTTTTGCCATCTT
TTGTTGGCTGTTTTGTTAATGGGATTGGCACCTTTGATGAGGAAATGACG
TTACATTTTTATCACCTTATAAATTAATATAATAACTATTAGATTAATTA
TCAACGCGAAAATTGATTACCGCGAAATAGTGGAATATCTGAGAAAGTTA
ATATAATTTTTTACGCGTTAAAGAGAATACTGGAGATCTTTGTATATTTA
TTCCATTTCCGTTATTTATATCACTTCATTAGAATTTTGTCACATCCGGT
TATTGACTCCCAATAGGTTACAATTTTATGAAGAATGAAGNCTTGTCATA
TCCGGTTATTGACTCCCAATAGGTTACAATTTTATGAAGAAGACAAAGGG
AGTAATCAATTTCATTAAAAGAAAATATCGGCTTTTTTCGGAAGTTAATT
ATTACTCTAGCAAGTCATGGAGTAAACACATCGTTGTTATATAAGTCGGC
TCAATACATACGAGTCGAGACATTATACAGGTCCCTACAGTATGGGGTAT
GGAAAGCTGTCAGTTTAGTTTGATAGTATTTGCTTATGTTGAATGCCTCG
CTCACGTGAAGGCAAAATTGCTTTTATGGTTGTTCACTTCAAAACTTAAC
TGGTTCAACGGCTTGAAATCCAGCGAGGATAATGGGCTTTATGGAAACAG
GGATGGTGTTTATATAGGTTCACAAGGTCAACGCGTTAGATTTACAAAGT
CAAAATTATTCTTATTGGAGAAATAGTTTTTCAAAGTTTATTTCACTGTA
ATATTAATTTTTGAAATACGTCACGCGTCACGTCATACGTCGCGTGCTTT
ATCAGAATCGAGATTTACACCCGGGGGGGTACTACCCTTGTCGACCGACG
GGGGTGCTCCGCCTAGGTTCGAAAAATGGACCCTACGTGGGACTCGAAAT
TTGCGAAAAAAGTGACCCTTAATGGGACTGAAATTCCAAAATTTTCTCAA
ATTTTCTACTTTTTTCCCAAACTTTCCAAAAATAGGCACCCTACGAGGGA
CTGATTTTTCTATTTTGGTGTTTTTGCGACCCTACCAGGGACTCGCGGAG
GTTAAAAAAGGTACCCTGGCCAGCGGAGCATCCCCGTAACCGATTTTGCC
CTAGTACCTCCCCCGGGGATTTACATGGTACTTTTACGATTTTAAATTTT
TTTGAACAATAAGTTGCTTAACCTTTAAGGATGCGACAGTTGCTAGATAT
ATTATTTAAGTATTCTTTTAACAAAGTGACTAAAACAAATATGTACTTTT
CGCGTTTATTAATCGCGCGAAAATTGATCGAAAGAAATTTGAATCACCCA
GACAAAACATATGAGGGATGTCTGAAAGATAATTAAAAAGAGAGTGAAAA
ATGATTTGAAAACAAAATTGAAGTATTCATAGTAAATTGATAAGGTGAAA
TCAAGAAAAGCTTGGGTAATTAATTATCATAATTATCTCAATTATATTTT
TGAAAAGTCTGCCTTATATTGTCACCTTCTCACTTGGGAAAAGTTGATTA
TTAAATTAGCTGGCGTACTGTGTTTTCACCACACGACTAAATGGACAGCT
TTTGATGTGTACCGCATAAAATAATAATGAAGGAGAGGAGCATACGTGTG
CTTTGTTTCTCTTTACTTTGTCTGAACGGTCATGTCGAAACTGTCAGCTT
TTCTCCGGTCAGATTGATGTTAGAATAAATACAGATTTCTTCAAGTGTTC
TTTGGAGTGACACTTGAAATCATTCTACTGCGCTTTTCAAGTTTCTCACT
ATTTTAATGTTGATTTTTTGAAATCAAAGGGTTATATTTTAACCCCCTTT
TTTGTGAAATTTTGGCTTCTGAAGAAGGGACGATTCTGACAATATTTTAC
ATTGTGTTACGTCCTTGNGTTATATTTTAACGCCCTTTTTTGTGAAATTT
TGGCTTCTGAAGAAGGGACGATTCTGACAATATTTTACATTGTGTTACGT
CCTTGTTTGAATTTCTTTATGACATATTTGGCATCTTGAATTCCCTCACA
CATCTGTCAGTGGATAATACCTTTCTGGGAAAGAACTTGTCAATTTATGA
CTGTTTATAGTAATTTTTTCTTGTTTTTGATAGGAAAAAGATATCCAATA
GAAATAATAAATCAACATATTTGAAATACCACATCAACTTGATAGAACCG
TCAAAATTATTTAGGATACGTTATTTGAAAACATACGAAGATACTGTACT
TATTATAAACAAAATGACTGCAAGCTCATCCACACCACCTTCAACACCTC
GGAAAGCTCATAAAGTTGTCTTGATTGGAGATTCACAATGTGGAAAGTCA
TCATTATTAAGAAGATACACAAGAAAAAGTTTTGAAGAGGTGAGATTTCA
ATATCTAATGTATAGAAACAGAGAGCATCTTGTATATTTCTTAAAAAAGG
GGTTTTGGAAAGTTTGGAAGTGATAGAGGAACGCTTGAACATTTTTATTT
ACACATTATAATAAAAAACTGTATATAAGAACATAAGACTGTTAAGAAAA
GTTGAGAAAAGTTGAGAACATTTTAAAGCTTTTTTGACTCAAGAACACCC
GTTTATTTAGGAAAATGGGTAAAAATGGTCAAAAAATATTCTTAAAACAT
TTTTAGGCTTAAAACGTATAATCCCTGTATTTTTCATGACATTTTGTGTA
AATATCTCACTTATTCAAATGCTGTTTAAAAATGTTTTAAGAGCTGACTA
AATTGTTTCGTGTCTTTGAAAATCTTACCAATTACCAGATTTGTAAGATT
AGCAATCAAACAATAATCTTGAATTCGACTTTTGGACTTTGAATGTGAAG
TTTCACAGGCTGGGTAAATAGGTTTTTAGAATCCACTCGCATTGCCAATT
TCTTTGTGTTTGTTAATTTCAAAATATCTCAACTTTCTAAACCCCATTTT
CAATGAATCGGAATGTTATTATTGCCACGACATGAAATCGTAAACTTTCT
CATCAATCAAAGTACCTTTTCATTCATACAAAGATTTACGAGGTCCCTGA
AATAGCATGAGAATCAACTACCTGACCCACAAACGCCTCGCTAAACGGTT
CATTAGTACAAACTTTCAGACATGCTAATGTGTTTATTTACGAGTGATTA
ATATATCCTTATCTCGTTTGATTTCAGGATTATATGCCGACTGTATTTGA
TTCAGGATCCGCAGATATCGTCGCTGACCAGAATAATGATATCCAAGTTA
ACATCTGGGATACATCAGGTAAAATNCGTCGCTGACCAGAATAATGATAT
CCAAGTCAACATCTGGGATACATCAGGTAAAATGATGCTTTAATTTAACT
TCAATTTGCTATAAACATGCTCGATTGACGTTTTCGCTAAACAGACTTTT
AATTTCTCAATCTCTGATTGCACTGTCGGTAAATCTAACTCATCATCAAG
CCTAATTATTTAAAGATTTTTGGTTTCCTGTTACTCCAATCATTGTTACA
CAGTAATTAAGTTTGAGTATCTTCTATTCGTTTCTATGGAGCTTAAGGTC
CGTTAAAATATTGATTTCCATGTGATGTTATATTCTACTTTCCGTTGTTA
TACAGACTTCCTGATTATGATCCCTTCCTTTCACTTCAGAAGGAAATTTA
TAGTAACTGTAGCCCACTCAATGTCAATATTTTAGGTTACTATTATTTCT
ATTTCCATGACAATTTTAGGCTCTGGAGAATACGACCATGTCAGACCATT
ATCTTTTGGAGAAGCGACTGTCTTCATTGTCTGCTTTGACATCACCAAAT
CAACAACTTTAGAAAATATACAAAGAAAAGTAAGGAAGAAAACTAATTAG
AATTTCAGATTATATACTTGCTTACTTTTAAATCTTAGTAGTTTTCAATC
TATTAAAGCCTAGTTTTACTAAAATACATAACCGTATTTGATATAAACTG
GAGAAGGGAAATTTTTGTCCTTCTGAACTTTTGTTTTGATGATTTTTAAT
TTGAATAGTTGGTATCATATTTTCAATGTTATTATAAAAGAAAGATCAAT
TCAAAAACACTTAAAAGTGTAACAGCGGCCAACCCTTTGTTTCACGTAAT
TAAGGCGTTCAAGTGCGGTCAACAACCATTTACGTTCTTTGATCAATTGC
GGTCGGAAAATCTTTATGCTATTGCCAAATCTGTTATTGTTTAATGATTT
AATAGACATGACAATGAACTCCAAGAACGTTTTTTCTTTCGTACGTATGA
TATTGAGTACTCCTAATTTTTACGCAATTGGTCATCCCATATTTGTTATT
TATCGTTGCGTCAAATCAAGGTTTTCCGTCTGAAATGTTACATGTTTTGA
ACCCTTAGCAAACACCCTTAAAAACTGTTTTTTAACCATAATGTTTTTGT
TTTTATTCTCCAGTGGTTGCCAGAGATTCGCCAGCGTCACGCCGACAGAC
CCATTATCTTGGTTGGATGCAAAAGTGATCTGAAAGCTGACCAGAAACTT
ACAAATATCCACAAACGATTAGTGCTGTCAAGCCAGGTAAATATTTACTA
ATATTTCTTTTAACTTTTACACATTGATTCGTATATGTCCAACGGTAGTA
GATTACAATCTGGTATTTCAACATTGAATTCGCAGGTTAACAACATTAAT
ATTGATATCTGAAAAGAGGTGGTTATACCGTCAATTATACTATACCTTGT
CGGTCCTTTTTACACCAACCCATATTACGCCAAAGTTCAGTTTTTCAATT
TTTATCCCGGTCCTAATTTTATACTAATCCTTTACGCCAGCGACGAAAAT
CTAACGCCAATAAGAATCGGCGTAAAAAGGACATCATGTTGTTAATCCTA
AATAAATTTTGTGATTTAAGACAACTCTTTTCTTTTACTTACAGGGTTTG
TTACTGGCAAAACATATTGGAGCAATCGCATATTATGAATGTAGCAGTAA
AGTAGAAGATACACCTGAAACGATAAACTCTTTATTTGAAACTGCAGCCA
TGGCGTCAACTGGAAGTCTTGGTAAAATCTCAAAAGAACATCGAATNCGA
AACTGCTGCCATGGCGTCAACTGGAAGTCTTGGTAAAATTTCAAAAGAAC
ATCGAATTAAATTTGATAAAAAGAAGAACAAAGCATACGAGAAATGCACC
ATTTCGTGAATATGTAGAATATTGGTGAACAAGCTAGTTTGAAGAAGATG
AGCTGGAGACAGTAGGAAGAATGATGGTGGTAGCAGCTTCTCGTAACCTT
GCGTCGACTCGTCTTTTCTTGTCTGAGCATTATTTTGGTCATTGGTTGCC
CATCTGACACACAACGTCGTTTCAACGTTTTTCTGATATTCAAAACGCCC
ATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCATTGGTTGTCG
CTATTTCTACCAGAATCAATAATTTTCAATGGAATTTACCAAACATTACC
CAAAGATGACTCAATATACATGTTATGGTGGTAATGAAGAATTTACTAAT
TTGAAGCGACTAACAGCTCGAGTTTTACTGATTATGTAGCATTACTCAAA
TGTCATTTATGTCATATTTTGACATTATATTGAAATAGAATTCAGATGCC
CAATGTGACTTTTATGGGTTCGATGGATTCGGCAAACCAGTTATTTGCAT
CAATCTTGGTTGTAAAACTGGTAACTAAAGAGATCAAACCTTTGATAAAA
ATATCAGAGTAATTTTGATGCTTTAGAATTAATTTCTTTTTTTAAATAAA
GATGCTTTGTAAATATTATATACTAAGCGCAAACTCTTTCGTTTTAGAAA
GATCTTTGTAACATGTAATTATCCAAATTATGAAGATATGAATACAGAAT
GATCTAACCATGAAATTTTGCTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043364XLOC_043364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069648-exon-scaffold_503-1575043694:255713..255735TCONS_00069648-exon-scaffold_503-1575043694:255713..255735Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:253297..253552TCONS_00069648-exon-scaffold_503-1575043694:253297..253552Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:252418..252508TCONS_00069648-exon-scaffold_503-1575043694:252418..252508Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:251857..251966TCONS_00069648-exon-scaffold_503-1575043694:251857..251966Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:251150..251272TCONS_00069648-exon-scaffold_503-1575043694:251150..251272Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:250647..250791TCONS_00069648-exon-scaffold_503-1575043694:250647..250791Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1575043694:249810..250585TCONS_00069648-exon-scaffold_503-1575043694:249810..250585Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:255713..255735TCONS_00069648-exon-scaffold_503-1510915933:255713..255735Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:253297..253552TCONS_00069648-exon-scaffold_503-1510915933:253297..253552Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:252418..252508TCONS_00069648-exon-scaffold_503-1510915933:252418..252508Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:251857..251966TCONS_00069648-exon-scaffold_503-1510915933:251857..251966Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:251150..251272TCONS_00069648-exon-scaffold_503-1510915933:251150..251272Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:250647..250791TCONS_00069648-exon-scaffold_503-1510915933:250647..250791Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1510915933:249810..250585TCONS_00069648-exon-scaffold_503-1510915933:249810..250585Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:255713..255735TCONS_00069648-exon-scaffold_503-1491911889:255713..255735Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:253297..253552TCONS_00069648-exon-scaffold_503-1491911889:253297..253552Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:252418..252508TCONS_00069648-exon-scaffold_503-1491911889:252418..252508Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:251857..251966TCONS_00069648-exon-scaffold_503-1491911889:251857..251966Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:251150..251272TCONS_00069648-exon-scaffold_503-1491911889:251150..251272Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:250647..250791TCONS_00069648-exon-scaffold_503-1491911889:250647..250791Clytia hemisphaericaexon
TCONS_00069648-exon-scaffold_503-1491911889:249810..250585TCONS_00069648-exon-scaffold_503-1491911889:249810..250585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:249810..255735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.3765	5.86799	2.24483	1.12371	207.721	155.498	81.8419	77.0902	39.6301	44.6457	32.0298	27.7942	38.8138	28.3398	57.5642	50.146	23.0178	24.9196	9.98326	11.9143	6.9268	6.98514	11.0929	12.1212	9.48651	9.928	50.3875	43.4654	31.8164	27.5375
Blast
[Close]
BLAST of TCONS_00069648 vs. Swiss-Prot (Human)
Match: RND3 (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.048e-39
Identity = 72/188 (38.30%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:  202 KVVLIGDSQCGKSSLLRRYTRKSFEEDYMPTVFDSGSADIVADQNNDIQVNIWDTSGSGEYDHVRPLSFGEATVFIVCFDITKSTTLENIQRKWLPEIRQRHADRPIILVGCKSDLKAD----QKLTNIHKRLVLSSQGLLLAKHIGAIAYYECSSKVEDTPETINSLFETAAMASTGSLGKISKEHR 753
            K+V++GDSQCGK++LL  + +  F E+Y+PTVF++ +A    D    I++++WDTSGS  YD+VRPLS+ ++   ++CFDI++  TL+++ +KW  EI++   +  ++LVGCKSDL+ D     +L+N  +  V   QG  +AK IGA  Y ECS+   +   ++  +F  A +A      K  K ++
Sbjct:   25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQR-IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN--SVRDIFHVATLACVNKTNKNVKRNK 209
The following BLAST results are available for this feature:
BLAST of TCONS_00069648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RND34.048e-3938.30Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
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