TCONS_00069644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069644
Unique NameTCONS_00069644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069644 ID=TCONS_00069644|Name=TCONS_00069644|organism=Clytia hemisphaerica|type=transcript|length=746bp
CCTCAACCTCACGACAGCTTGACAAATTGATCTGGTCACAATCTGCTGTA
AACTTTTTCATAGCTTATTCAACTTTTAATAACCATTATGCTTGTGGCAA
AGAGAATTCGAACGGCTAAGCAGATAAATGATTTCGAAGaatCTGGTATT
GTCATTAAGGTCAAGTTTGATGATGGTTTTATTTCAGAAAAGGACTCACT
TTCCCTCAAATTTACAACAACAAATAATATTGATTCCGTTCCCAAAGATG
CTAGCAGTAAAGCTTTTGGACAAATTGAAATTCCAGATGGTCGTCTAGTT
CCTGCTGATGAACTTGAATCAGGGCTTAATGGTTTTGCCTTATATGAAGG
GAAATTTTATATGTGCACCATATTGAATGTACGCAGTGGCAACAAAAGAA
AGAGTGATTCAGTGATGACCATTCCATCCAaatcaaaaagtccaaaaaca
aaaaaatctaagAAAGATCCAGAAAAGGTAACTGGaaaagatgatgaaaa
tgaGGAAGGTTAGTTTGggattggaattttttttctaatttcaatATGAT
GTCAGCCAAAAAGTTACCTTATGAGAAGAAATTTGGGTGATTTATTATAG
ATTTTTAAGTTGGACGAGAAGTGTTTTTGGGAAACCACCCacttttgttg
aatattttagctgaaaaaggaggaaaaaattatttctagaAGAAATACag
actaaaatgaaaaaaaagaaagagcaAGAATTGATTTTGGCAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_503:62596..65951-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069644 ID=TCONS_00069644|Name=TCONS_00069644|organism=Clytia hemisphaerica|type=transcript|length=3356bp|location=Sequence derived from alignment at scaffold_503:62596..65951- (Clytia hemisphaerica)
CCTCAACCTCACGACAGCTTGACAAATTGATCTGGTCACAATCTGCTGTA
AACTTTTTCATAGCTTATTCAACTTTTAATAACCATTATGCTTGTGGCAA
AGAGAATTCGAACGGCTAAGCAGATAAATGATTTCGAAGGTAAGTTAAGC
AATCTATTATAGATATATATGTGAAGAAATAAGAATTTCTGTCCAACTAT
ATTCACTCAGGAGATTTGGGTGGCAGAGCAGCATATGCATTTCGTCCTTA
TTAGGACTCGTCAGCACTGCATACCCTGGCTGGCTAGATCGATTTAGCCA
GCATCTCTAAACCACAAAATCACTTGTGGTTCAAACTGAGAGCAATAGCT
AGTGGAGAAAACTGGAGGCCCTGATCAGTTGGGTGTATAAGATAAAAACT
GCAATTATTGCTCTTTTCGGAAATTTTTGCCGAAAACGGCAATTTTTTTA
ACGATGAAATGCTGAATCAGCAAAATGTGTGGTCCTTTTAAGGGCAAAGA
TGTCAGAGGTGTTTGAAAATGGTAAAATTGCATTGAGAAAAAGGTTTTTC
GGATTTTTAAAAGTGATTTTTTCAATTTTTCGTTGCTCAATAACATGAAA
AGTTCTAAAATAATATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCCGTTGTAAATTT
GTTTACATATGACTCGATTTTGCTATCTGCATTTCCAACAAAAACCAGTT
GAAAACAAAACTAAACGAGGCACAGCGGGCCTTTTTATTGCGAGGGTGTC
AAATACCACGTTTTCAATAATAAAATCGACTTTTATTTGCAAAAACGGCA
ATAATTGCCGAAAACGGCAATTTTCATTTATTTACTTTTTTATTTTTCTG
CTGATTCAGCATTTCATCGTTAAAAAAATTGCCGTTTTCGGCAATAATTT
CCGAAAAGAGCAATAATTGCAGTTTTTATCTTAACACCCGACTGCTGATG
TCCTCTACTGGAGTACCTTTGGAGATATATAGCTTTATTCTGAACCTGTT
AAGCCTTTTGGCAGATTGTGGGTAGTTCACTAAGTATTCACTTTGTGTCC
AACCCCTATAAAGCTTGTGAAGATGGAAAATTTCTTCTGCTCTGGGAGCT
TTGTCGTTGTCTTTTAAATGTTTTTTCTTTTTTATAGAATCTGGTATTGT
CATTAAGGTCAAGTTTGATGATGGTTTTATTTCAGAAAAGGACTCACTTT
CCCTCAAATTTACAACAACAAATAATATTGATTCCGTTCCCAAAGATGCT
AGCAGTAAAGCTTTTGGACAAATTGTAAGCAAGCAACTACAGTCAACTAC
TCCAACTTGGGACGAGTGGTAGCAACATGGGACTTGTTGATATATCTTGT
CTGTATTTTTACTTACTGTTAAATCACTTTGACAACAAATTTGTTTTGAT
AACTCCACCAAGTCTATCAATCATACTTCTTTGCTCCTGTTAGAGAGTGC
ACAGACGATTTAAAAGCCTACTCAGTGGGAAAGAGAAATCATGTATTTTT
TAATACGCGGTTCATTAAACTCAAATCAAATGACTTTGAGGTTTCGGTGA
AATGGTGGTGGAATGGCTGTCCCATGTAGTTTCAGATAGTCCCAAGTTGA
AGCAGTTGACGGTAGCTATGTCTCAAACTTTTTTTATAATTCATGGCCTA
GAGTTTTAATTTTTTCATCAGCCCATCCCTAATTTAATTCAGAATATTAA
CCCTTTTGAAGCAATATGAGTTCGATTAGTTCAGTCAGTAAAAAGTTTGA
TTAGTTCAATGATATTAAATCCTAATATCTTTCCTTTCCTTGCTGTCCCT
TGCAAAATCCTTATTTTGGCACTCGACTACCATTTCAACAGTTTCCAGAT
TATTGTATATTTAAATTGTACTTTAATCATTTGATTGGTAAGACAAGTTT
GATTGATTGGGTCTGCTTTTAAAGCTAATCTGTAAACTATCATAACATTT
AATCCTTTTATTTTAATTCTCAGGAAATTCCAGATGGTCGTCTAGTTCCT
GCTGATGAACTTGAATCAGGGCTTAATGGTTTTGCCTTATATGAAGGGAA
ATTTTATATGTGCACCATATTGAATGTACGCAGTGGCAACAAAAGAAGTA
ATCAAACTCTTTTTTCATTTCATATCCATACAGCTTGTCCTAAAGAAGCG
CTCAGTTTCCATATATTGCAGTGTACTAGATTTGAGATTTTTTGCAGAAC
TAAATTTTGCAGATTTTTGATTATTGGCAAAAATTACAGCCATTTGTAAA
CTATTTAATCGTTGTTTTACTAGCTTGAAAAGTTTTGGGGATAAAGTTAA
TATGCGATACGGGGCAAAATTGGGTCTGAGTACAGACAACACAAATGCGC
AAGCAAAACCTTAACCAGTGTTTGTGATGACAAGAACTGTCTACTCATAT
ATAGTTGCAGTTTTCACATAGCATTTTTATATAATACTCATTGATGCCCT
TAAAAGACATGTCACCACAACAAAGAAATTTGCAAAATTTAAAAGTGCTC
CATAGTGGAGTTCCATCATGTTTGAGGTTAGCATATAATTTAGCCCCAGT
TTTCTGGTTAAATTCAAAATTTATTTTGTAATTGAACTATGTTTTTCTTC
CATAGAGAGTGATTCAGTGATGACCATTCCATCCAAATCAAAAAGTCCAA
AAACAAAAAAATCTAAGAAAGGTTTGTCTGATCTGATGTAAATTTGTTTA
TGACATTTGGGTCTAAATATAACCTCTTGGCTTTAGGGTGTGAGCTTTTT
TCTTCATTTTTTACATTCAAAATCTTGCCTTGATTTCCTTGTACTTATTA
CAATAGAGATATCAATTCTGGTGAGGACTATTGTTAAAAGGTCAAATTTT
TCCAGAAAAATCTCTATTGAAAAATAATCTACACTGGAAAATCTATCCTT
TCCAATAAATAATTCTTGTTTCACAGATCCAGAAAAGGTAACTGGAAAAG
ATGATGAAAATGAGGAAGGTTAGTTTGGGATTGGAATTTTTTTTCTAATT
TCAATATGATGTCAGCCAAAAAGTTACCTTATGAGAAGAAATTTGGGTGA
TTTATTATAGATTTTTAAGTTGGACGAGAAGTGTTTTTGGGAAACCACCC
ACTTTTGTTGAATATTTTAGCTGAAAAAGGAGGAAAAAATTATTTCTAGA
AGAAATACAGACTAAAATGAAAAAAAAGAAAGAGCAAGAATTGATTTTGG
CAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043361XLOC_043361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069644-exon-scaffold_503-1575043694:65813..65951TCONS_00069644-exon-scaffold_503-1575043694:65813..65951Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1575043694:64528..64664TCONS_00069644-exon-scaffold_503-1575043694:64528..64664Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1575043694:63705..63828TCONS_00069644-exon-scaffold_503-1575043694:63705..63828Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1575043694:63131..63196TCONS_00069644-exon-scaffold_503-1575043694:63131..63196Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1575043694:62596..62875TCONS_00069644-exon-scaffold_503-1575043694:62596..62875Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1510915933:65813..65951TCONS_00069644-exon-scaffold_503-1510915933:65813..65951Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1510915933:64528..64664TCONS_00069644-exon-scaffold_503-1510915933:64528..64664Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1510915933:63705..63828TCONS_00069644-exon-scaffold_503-1510915933:63705..63828Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1510915933:63131..63196TCONS_00069644-exon-scaffold_503-1510915933:63131..63196Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1510915933:62596..62875TCONS_00069644-exon-scaffold_503-1510915933:62596..62875Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1491911889:65813..65951TCONS_00069644-exon-scaffold_503-1491911889:65813..65951Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1491911889:64528..64664TCONS_00069644-exon-scaffold_503-1491911889:64528..64664Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1491911889:63705..63828TCONS_00069644-exon-scaffold_503-1491911889:63705..63828Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1491911889:63131..63196TCONS_00069644-exon-scaffold_503-1491911889:63131..63196Clytia hemisphaericaexon
TCONS_00069644-exon-scaffold_503-1491911889:62596..62875TCONS_00069644-exon-scaffold_503-1491911889:62596..62875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:62596..65951 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.326707	0.4085	2.49442	0.938631	0	0	0.237951	0.692095	1.57024	0.0742497	0.452309	1.59343	1.65275	1.61134	1.24737	2.81656	2.07619	0.322109	0.0940644	0	1.27237	0.902108	0.0509782	1.03511e-08	1.60382	0.225322	0.689417	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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