TCONS_00069643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069643
Unique NameTCONS_00069643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069643 ID=TCONS_00069643|Name=TCONS_00069643|organism=Clytia hemisphaerica|type=transcript|length=495bp
TCTAAATATAACCTCTTGGCTTTAGGGTGTGagcttttttcttcattttt
tacattcaaaatcTTGCCTTGATTTCCTTGTACTTATTACAATAGAGATA
TCAATTCTGGTGAGGACTATTGTTAAAAGGTCaaatttttccagaaaaat
ctctattgaaaaaTAATCTACACTGGAAAATCTATCCTTTCCAATAAATA
ATTCTTGTTTCACAGATCCAGAAAAGGTAACTGGaaaagatgatgaaaat
gaGGAAGGTTAGTTTGggattggaattttttttctaatttcaatATGATG
TCAGCCAAAAAGTTACCTTATGAGAAGAAATTTGGGTGATTTATTATAGA
TTTTTAAGTTGGACGAGAAGTGTTTTTGGGAAACCACCCacttttgttga
atattttagctgaaaaaggaggaaaaaattatttctagaAGAAATACaga
ctaaaatgaaaaaaaagaaagagcaAGAATTGATTTTGGCAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_503:62596..63090-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069643 ID=TCONS_00069643|Name=TCONS_00069643|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at scaffold_503:62596..63090- (Clytia hemisphaerica)
TCTAAATATAACCTCTTGGCTTTAGGGTGTGAGCTTTTTTCTTCATTTTT
TACATTCAAAATCTTGCCTTGATTTCCTTGTACTTATTACAATAGAGATA
TCAATTCTGGTGAGGACTATTGTTAAAAGGTCAAATTTTTCCAGAAAAAT
CTCTATTGAAAAATAATCTACACTGGAAAATCTATCCTTTCCAATAAATA
ATTCTTGTTTCACAGATCCAGAAAAGGTAACTGGAAAAGATGATGAAAAT
GAGGAAGGTTAGTTTGGGATTGGAATTTTTTTTCTAATTTCAATATGATG
TCAGCCAAAAAGTTACCTTATGAGAAGAAATTTGGGTGATTTATTATAGA
TTTTTAAGTTGGACGAGAAGTGTTTTTGGGAAACCACCCACTTTTGTTGA
ATATTTTAGCTGAAAAAGGAGGAAAAAATTATTTCTAGAAGAAATACAGA
CTAAAATGAAAAAAAAGAAAGAGCAAGAATTGATTTTGGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043361XLOC_043361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069643-exon-scaffold_503-1575043694:62596..63090TCONS_00069643-exon-scaffold_503-1575043694:62596..63090Clytia hemisphaericaexon
TCONS_00069643-exon-scaffold_503-1510915933:62596..63090TCONS_00069643-exon-scaffold_503-1510915933:62596..63090Clytia hemisphaericaexon
TCONS_00069643-exon-scaffold_503-1491911889:62596..63090TCONS_00069643-exon-scaffold_503-1491911889:62596..63090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:62596..63090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48858	1.33063	0.59335	0.881772	1.61201	1.15195	2.39225	3.28474	0.615096	0.971631	1.48299	0	0.639944	0	0.543066	0.671462	1.18381	0.672836	0	0	1.2782	1.05302	0.765185	0.484541	0.0821564	0.356593	0	0.282516	0.898669	0.981945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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