TCONS_00069637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069637
Unique NameTCONS_00069637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069637 ID=TCONS_00069637|Name=TCONS_00069637|organism=Clytia hemisphaerica|type=transcript|length=1555bp
AAGGAAAACTTTGCAAAGATGTTACAACAGAAGAAGCATGTCAGGAGAAA
TTAGACATTGCCAAATCAAACACAACCAAAAAGGAACGCAGAAGGGCTCG
TATGGCTTACAAAAAGTGTGAAGCTTGTGGACAATGTGTGATGCCAACTT
TACCACCAACAACCCCTCAAGCCACTGATCCAGATGTTCCAGAACCCACT
GTACCTTCAGAAGTTGAGGAAGattttaatatgGACATGGTTTTCCAATT
CAGAAGACAAAATGAGGAAGATAAATTCTGTGCACGTAGCAGAGGCAAGC
TTTGTAAAGATGTTGAGACCGCGGATGATTGTCAAGGAAAACTTGAACTT
TCAACATCGGTAAACgcaacaaagaaagaaaagaaaagagcaCGAAAAGC
TTTCGAACGATGCGCTGTTTGTGGCGAATGCAAGAAAGCCTGTCGTACGA
GAGGCAGACTATGCACAAAAGTGACAAGTGAAGAAGTTTGCGAAAAGTTG
AATGAAATTGCTCAAAACGACAAAGTGCCTGAAAAGAGACGAAAAAGGGC
TTTTGCTGCTTATGAAAGTTGTGAAGTTTGTGGACAATGCACTGTCAAAC
CGACCAAGCCTCCAACAGCCCAACCATCTGCCTCACCCTCTGCCAAACCC
GAAGGAACTAAAAAACCCGAAAGCACTGCAGAGCCAGAAGGAACTGAGGA
ACCAGAAGGAACTGAGGAGCCAGAAGGCACTGAGGAGCCAGAAGGCACTG
AGGAACCGGAAGGGACCGAAGAGCCAGAAGGTTCTGGAGAAGAAGAGGAG
TAAAAACGTGATTGAACTTgacatgtttttaatttttttaaacatttgat
ACGATGAAAATGGACGACAATTTTAAATAACACACTTTGTAGACATTAAA
GAAGCACGATATTTTGCACTGTTTCctttcttttgaaataattttgataa
ttttgatatttttttaacccGTGTTTTATTTCCCAAATAAACCTGCTGCG
CTGAAATGTAAGCCCGAAATGCTAGTTATACGTGTTTTCTCAAGATAAGG
AAATCAATAGAGAAATGGTATGAGTTGTTTTGCTCAAAAATGATCTTTTA
GAACTTGAAACTTTCCAGCTTTACATCTTGAAAGCTTGAATATAGAGATA
GTTCTATGTAACCTTCCTTAATACAACACGAAACGAGTACACAACTGGTA
CAACTGTGTCTTCTTGCTAAAATAAGTTTAAAATTGATCTATAAGAGTAA
TTTGAGCTCTTAGTGTCCAAATTTCTGcaaagaaaattatcaaattgtAG
AAATTTGGACGCTGAGAGTTTCAAAACATTCCACTTTCGTTTTTCCACCT
CATTCACGAAGCGTTTTAAAAAACGAGGCATTGTGGGAACTTTTTTTAAc
tgaatatatttttgatgtCTTACTACAATGAAAACGGAATAGGAAACCAC
ACGTGTATTCCAATCGGAATAATAACTAATACTTGCTTAGGGCTAGCCAT
TAGCGTTTTTCGGTTCTAGAAACCCGTTCGTGAACATTTTACCGAAAACG
TAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_503:231233..235142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069637 ID=TCONS_00069637|Name=TCONS_00069637|organism=Clytia hemisphaerica|type=transcript|length=3910bp|location=Sequence derived from alignment at scaffold_503:231233..235142+ (Clytia hemisphaerica)
AAGGAAAACTTTGCAAAGATGTTACAACAGAAGAAGCATGTCAGGAGAAA
TTAGACATTGCCAAATCAAACACAACCAAAAAGGAACGCAGAAGGGCTCG
TATGGCTTACAAAAAGTGTGAAGCTTGTGGACAATGTGGTAAGTCTGTTG
CAAGAATATTctcaaaaaatatggaaaattatATTCATCTCTTTTATTTT
ACATCCTAGCCCAGGGGATGgaatacttaggcaaaatggttGTCGGATAT
GTGCAAGTCCCTCAAAGGGATAAAAAAcccattaaaaagcaattgagtct
ctgtaaggatttcaaatttatgaaattcaTAAATCAACTCTAACGAAgcg
tcataaattcttgaaatttggacttgAATCGGAAGTTCTTGTCTTGGGAA
ATAGTGTCTCTAAGtttggcaaaaacgtcaaaacggacaagattttcaaa
attcagtcTGTCTAAGGGCcgttttttggactttaaatCGGACATACCCT
TCATCTTACAAAGCTAGTACCCGCAGGCATTCCATTGGTAAAAAATAGCT
CTCAACATTTTTCGTttgattaattttcaaaattctttgcaAAACTAGTG
ATGCCAACTTTACCACCAACAACCCCTCAAGCCACTGATCCAGATGTTCC
AGAACCCACTGTACCTTCAGAAGTTGAGGAAGGTGAAAGTAgactttttt
tacatatttttgtctcaaatataTGCTTTGAAGGAAATTTTGCACTTGGT
CAGGCCTTCATCTTGGCcataaatgggcttttccagaaaaaaaaccgtat
accccctgttgaggaggtccatttccggtCCAAGGGGGTAAGATTTGATA
TATGGCGGAATTCCATGGGGAGATActaaaatctgtcaaaaaaataactg
gaattccatgggggtagccttttaaatcctagtaaaattcagaattccag
aggggctgaaacctgaaattgcctggaattccagggggttacagcgtttc
cagccacaaaatgatggacctcctcaacagggggtatacgttttttttct
ggaaaagcccaattgaTAAATACATTGTCCtttgtttgttattttgttaA
GCGCATATTTAGTATAATCCATTTCGTTTTAAAATCTGGTCAGATCTGCT
CTAGTGGTTAACCTggtgacaaaaaaaataaaaatggtctCATTTCAAGC
CGGGATAGGATAATGAATGAGCTTAAgatacttgaaaaaattttcttctg
ggTCAGATTATTCTCAAAAAGAAAGTATAGacgaaaaacaaaactttttt
cattctTGACGTTTCGATACTTCTTGTATCATGATCACAAGCAAATAGTT
AGCTTACAAGCAAAATCGTTTTGAATAATTATCTGTATGTGTATGTATGT
GTATTTTATGACCCATAATTGCTAgatgtgattttgaaattttgatttat
caacAGATTTATATGTCTTTACTTTACTTGAGCTTAGATACCTCGAAATC
AGACCCCGTGGAATTTAAAACTTCACCGAGTCAATGAGACAAGATAAGTC
TTTTAATAACCCTTTCTTATCCAAAATactttctagattttaatatgGAC
ATGGTTTTCCAATTCAGAAGACAAAATGAGGAAGGTAAGAAAACTAATGT
CTTTTAATCAGGTCACATGATACTTTTAAATTTCTGTGGGAAATTTTATg
gtgatttttcaatttctgaaaGCTCGCATATATAATAGCCAAATTTGGAA
CCTCTATCTGACAAGATTGGGTCAAGCATATGGAGATCAATTGGGGAAGA
GATGAATATCTTGTATCCCCACCAGAGATTTGATCCGTATAAAAATATCT
AGTCTTGtccattaaaaacaaaatattaccTATACTCTTTTGCAAATAAT
CATCCCCTATATCCTCTACGGGTAAGAATTCTTTGGAGTACTGAGACAAG
GGTGTTTTTATATTTCAGCTAAATTTTGTGCACGTAGCAGAAGCAAGCTT
TGCAAAGAAGTTGAGACCGCGGAANGTTTTTATATTTCAGATAAATTCTG
TGCACGTAGCAGAGGCAAGCTTTGTAAAGATGTTGAGACCGCGGATGATT
GTCAAGGAAAACTTGAACTTTCAACATCGGTAAACgcaacaaagaaagaa
aagaaaagagcaCGAAAAGCTTTCGAACGATGCGCTGTTTGTGGCGAATG
CAGTAAGTTAAAGATTAAGTAATTTAGTAATCATATATCATTCAACGGTT
TCTTTAGTTCAAATTATAAATTTGAGTTCAATATATTGATCTGTTGATTG
GTTCAATTTAGCCGCTATTAAATCAAAAACCTTTCATTTCAACCAAACTC
TTAAAAGATCTTATTCCTAAGCTACAAACTTTCATTTAAGGCTATGCTGC
TGATGCTTTTTTTTCTTAAGCCGTTTACTTCTGACAATGGTTATCAGTAT
AAAATCTTTCACGtgactttttttcactttacagAGAAAGCCTGTCGTAC
GAGAGGCAGACTATGCACAAAAGTGACAAGTGAAGAAGTTTGCGAAAAGT
TGAATGAAATTGCTCAAAACGACAAAGTGCCTGAAAAGAGACGAAAAAGG
GCTTTTGCTGCTTATGAAAGTTGTGAAGTTTGTGGACAATGCAGTAAGTT
TATAACCTTGTATCAAGATGGTTATTGATCGCATCTAACAGAGATAGGGT
ATCTAATCAGCATGATTCTGGTTGatgtaaattttgaattttttaagctA
ATATAATGGGAAtaatatgattttcaagttcaaGAAAAGAGTAAGAGTGT
AAGATCATTatgaattctcaaaaaatattcaCTTTTAGCTGTCAAACCGA
CCAAGCCTCCAACAGCCCAACCATCTGCCTCACCCTCTGCCAAACCCGAA
GGAACTAAAAAACCCGAAAGCACTGCAGAGCCAGAAGGAACTGAGGCACC
CGAAGGAACAGAAGCACCCGAAGGAACTGAAGAACCAGAAGTAACTGAGG
AACCAGAAGGAACTGAGGAGCCAGAAGGCACTGAGGAGCCAGAAGGCACT
GAGGAGCCAGAAGGCACTGAGGAACCAGAAGGCACTGAGGAGCCAGAAGG
CACTGAGGAACCGGAAGGGACCGAAGAGCCAGAAGGTTCTGGAGAAGAAG
AGGAGTAAAAACGTGATTGAACTTgacatgtttttaatttttttaaacat
ttgatACGATGAAAATGGACGACAATTTTAAATAACACACTTTGTAGACA
TTAAAGAAGCACGATATTTTGCACTGTTTCctttcttttgaaataatttt
gataattttgatatttttttaacccGTGTTTTATTTCCCAAATAAACCTG
CTGCGCTGAAATGTAAGCCCGAAATGCTAGTTATACGTGTTTTCTCAAGA
TAAGGAAATCAATAGAGAAATGGTATGAGTTGTTTTGCTCAAAAATGATC
TTTTAGAACTTGAAACTTTCCAGCTTTACATCTTGAAAGCTTGAATATAG
AGATAGTTCTATGTAACCTTCCTTAATACAACACGAAACGAGTACACAAC
TGGTACAACTGTGTCTTCTTGCTAAAATAAGTTTAAAATTGATCTATAAG
AGTAATTTGAGCTCTTAGTGTCCAAATTTCTGcaaagaaaattatcaaat
tgtAGAAATTTGGACGCTGAGAGTTTCAAAACATTCCACTTTCGTTTTTC
CACCTCATTCACGAAGCGTTTTAAAAAACGAGGCATTGTGGGAACTTTTT
TTAActgaatatatttttgatgtCTTACTACAATGAAAACGGAATAGGAA
ACCACACGTGTATTCCAATCGGAATAATAACTAATACTTGCTTAGGGCTA
GCCATTAGCGTTTTTCGGTTCTAGAAACCCGTTCGTGAACATTTTACCGA
AAACGTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043360XLOC_043360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069637-exon-scaffold_503-1491911889:231233..231370TCONS_00069637-exon-scaffold_503-1491911889:231233..231370Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:231233..231370TCONS_00069637-exon-scaffold_503-1510915933:231233..231370Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:231233..231370TCONS_00069637-exon-scaffold_503-1575043694:231233..231370Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:231831..231914TCONS_00069637-exon-scaffold_503-1491911889:231831..231914Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:231831..231914TCONS_00069637-exon-scaffold_503-1510915933:231831..231914Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:231831..231914TCONS_00069637-exon-scaffold_503-1575043694:231831..231914Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:232819..232866TCONS_00069637-exon-scaffold_503-1491911889:232819..232866Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:232819..232866TCONS_00069637-exon-scaffold_503-1510915933:232819..232866Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:232819..232866TCONS_00069637-exon-scaffold_503-1575043694:232819..232866Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:233273..233434TCONS_00069637-exon-scaffold_503-1491911889:233273..233434Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:233273..233434TCONS_00069637-exon-scaffold_503-1510915933:233273..233434Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:233273..233434TCONS_00069637-exon-scaffold_503-1575043694:233273..233434Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:233717..233875TCONS_00069637-exon-scaffold_503-1491911889:233717..233875Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:233717..233875TCONS_00069637-exon-scaffold_503-1510915933:233717..233875Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:233717..233875TCONS_00069637-exon-scaffold_503-1575043694:233717..233875Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:234071..234177TCONS_00069637-exon-scaffold_503-1491911889:234071..234177Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:234071..234177TCONS_00069637-exon-scaffold_503-1510915933:234071..234177Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:234071..234177TCONS_00069637-exon-scaffold_503-1575043694:234071..234177Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:234232..234259TCONS_00069637-exon-scaffold_503-1491911889:234232..234259Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:234232..234259TCONS_00069637-exon-scaffold_503-1510915933:234232..234259Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:234232..234259TCONS_00069637-exon-scaffold_503-1575043694:234232..234259Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1491911889:234314..235142TCONS_00069637-exon-scaffold_503-1491911889:234314..235142Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1510915933:234314..235142TCONS_00069637-exon-scaffold_503-1510915933:234314..235142Clytia hemisphaericaexon
TCONS_00069637-exon-scaffold_503-1575043694:234314..235142TCONS_00069637-exon-scaffold_503-1575043694:234314..235142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:231233..235142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.331082	0	0	0	0	0	0	2.75557e-08	0	0	0	0	0.378161	0	0.0149669	0.0342466	8.6264	5.71815	0	0	0	1.17034e-06	2.42313e-08	0	0	0.158941	2.24168e-06	0	0	0.212571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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