TCONS_00069635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069635
Unique NameTCONS_00069635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069635 ID=TCONS_00069635|Name=TCONS_00069635|organism=Clytia hemisphaerica|type=transcript|length=1903bp
ATTACCTTATAAATAGCAGCTGCTTGAAAACATTAGGACACTATCTTTTT
TCTTAAAACCTAGTTGCAGAAATGAAGTCGTTGGTTTTATTTTCCGTGCT
ACTTTTGGCAACCATCTGTGctgaCGCTGGAAGGAGCAAGAAACATGACA
AGACACTCAGCAAAACATTATCGGACCTCAAAAGGACTTCTAACCTCTTA
GAAGATAAACTTGAAAcatttaaaAGACAAAGcggagaaaaaagaaaagg
tgGAAAAGtaaaagtatGCAGAACAAAAGGAAAACTTTGCAAAGATGTTA
CAACAGAAGAAGCATGTCAGGAGAAATTAGACATTGCCAAATCAAACACA
ACCAAAAAGGAACGCAGAAGGGCTCGTATGGCTTACAAAAAGTGTGAAGC
TTGTGAACAATGTGTGATGCCAACTTTACCACCAACAACCCCTCAAGCCA
CTGATCCAGATGTTCCAGAACCCACTGTACCTTCAGAAGTTGAGGAAGat
tttaatatgGACATGGTTTTCCAATTCAGAAGACAAAATGAGGAAGATAA
ATTCTGTGCACGTAGCAGAGGCAAGCTTTGTAAAGATGTTGAGACCGCGG
ATGATTGTCAAGGAAAACTTGAACTTTCAACATCGGTAAACgcaacaaag
aaagaaaagaaaagagcaCGAAAAGCTTTCGAACGATGCGCTGTTTGTGG
CGAATGCAAGAAAGCCTGTCGTACGAGAGGCAGACTATGCACAAAAGTGA
CAAGTGAAGAAGTTTGCGAAAAGTTGAATGAAATTGCTCAAAACGACAAA
GTGCCTGAAAAGAGACGAAAAAGGGCTTTTGCTGCTTATGAAAGTTGTGA
AGTTTGTGGACAATGCACTGTCAAACCGACCAAGCCTCCAACAGCCCAAC
CATCTGCCTCACCCTCTGCCAAACCCGAAGGAACTAAAAAACCCGAAAGC
ACTGCAGAGCCAGAAGGAACTGAGGCACCCGAAGGAACAGAAGAACCAGA
AGGAACTGAGGAGCCAGAAGGCACTGAGGAGCCAGAAGGCACTGAGGAGC
CAGAAGGCACTGAGGAACCAGAAGGCACTGAGGAGCCAGAAGGCACTGAG
GAACCGGAAGGGACCGAAGAGCCAGAAGGTTCTGGAGAAGAAGAGGAGTA
AAAACGTGATTGAACTTgacatgtttttaatttttttaaacatttgatAC
GATGAAAATGGACGACAATTTTAAATAACACACTTTGTAGACATTAAAGA
AGCACGATATTTTGCACTGTTTCctttcttttgaaataattttgataatt
ttgatatttttttaacccGTGTTTTATTTCCCAAATAAACCTGCTGCGCT
GAAATGTAAGCCCGAAATGCTAGTTATACGTGTTTTCTCAAGATAAGGAA
ATCAATAGAGAAATGGTATGAGTTGTTTTGCTCAAAAATGATCTTTTAGA
ACTTGAAACTTTCCAGCTTTACATCTTGAAAGCTTGAATATAGAGATAGT
TCTATGTAACCTTCCTTAATACAACACGAAACGAGTACACAACTGGTACA
ACTGTGTCTTCTTGCTAAAATAAGTTTAAAATTGATCTATAAGAGTAATT
TGAGCTCTTAGTGTCCAAATTTCTGcaaagaaaattatcaaattgtAGAA
ATTTGGACGCTGAGAGTTTCAAAACATTCCACTTTCGTTTTTCCACCTCA
TTCACGAAGCGTTTTAAAAAACGAGGCATTGTGGGAACTTTTTTTAActg
aatatatttttgatgtCTTACTACAATGAAAACGGAATAGGAAACCACAC
GTGTATTCCAATCGGAATAATAACTAATACTTGCTTAGGGCTAGCCATTA
GCGTTTTTCGGTTCTAGAAACCCGTTCGTGAACATTTTACCGAAAACGTA
GAA
Run BLAST on NCBI

transcript from alignment at scaffold_503:229463..235142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069635 ID=TCONS_00069635|Name=TCONS_00069635|organism=Clytia hemisphaerica|type=transcript|length=5680bp|location=Sequence derived from alignment at scaffold_503:229463..235142+ (Clytia hemisphaerica)
ATTACCTTATAAATAGCAGCTGCTTGAAAACATTAGGACACTATCTTTTT
TCTTAAAACCTAGTTGCAGAAATGAAGTCGTTGGTTTTATTTTCCGTGCT
ACTTTTGGCAACCATCTGTGGTGAGTATATGATGTTTCCCCGGTCCTTTC
TGAATATTCAGGCAATAAATGATTAAAGTAATCTTAGATTTGTGAAGCGT
GTTCCCTTATATACTGACatgtttatcatttttttaagtTATTGTAAATT
GACTGTTCAGCCACTTTGCAGCACTGATATTATGCTCTGAAACGCCTCCG
TCTCGCAGTTCTGATGAAATACTTTCCGACAGCTGGGGTGAAGGTTTCTA
TCAAAATCCCGATAGTGTTACGATTCTATTCTTCCAGGcctaaaaaatcc
agggggctgggatggttttggagtgtattTAACATTGAATGTCAAATTGG
GATGAAGTCAATTATCCAGTTGGGCTAAAATTCGCTGCAGGGTACTTTTC
CAACTGGatacaaaatttttccaaaacttttcagTTGTTGGGGGTTGtgt
ccaatgaagtataagcccgaagagctagaagtcaatctctttggtaggat
ttgaagccaacaaatcctaccaaagttgcgcggtcttgagcgacccgcct
ggtttttacacaaatgacagattgaaactaaaatttaccgcttaattttg
aaaaatatataactcgaaaacaaaggaattgctagattcaatccgtcatc
aaaaatacggcgcatattttaaggcttcaatttttcttgcctgagaaagg
ttagagattgacctctagcccttcgggcttgaaactcaatggttgtgTCT
GTGTCGCAGAGGTGTTGTAAGGAATTGATTATAGGAATAGGTTAAGAAGA
ATTGTATAGCCTGGAAAATCTATTCTAAGTTCTctcgtttttgtttttag
ctgaCGCTGGAAGGAGCAAGAAACATGACAAGACACTCAGCAAAACATTA
TCGGACCTCAAAAGGACTTCTAACCTCTTAGAAGATAAACTTGAAAGTAA
GAATAAACCGCGTTCGAGTAAATTACTATATATTGATCCCTTTGGATAAA
AGGCAccataaaatactctctgtaatttgaagaaaatttttagttctttg
aaaatcatttttgagagAATAAACAGTATTGCTGCTGGGTTTTCTCTTTA
AAGCTGTTGAATTAGTTTTTTAGGGATTTTTATATTCTTAATTTAGTCTG
GGTCTCTAAGATTTTGTTCCACTGTATAgcgatcattaatttttttagca
tttaaaAGACAAAGcggagaaaaaagaaaaggtgGAAAAGGTTAGTGTTT
TGATTATCCATATTAATTATTTGCTAGCTCCATGTTTTGAATAAGAATCA
GAAGGAAAGCTTTTTGGAAACTTCCGGTACGatactcaacctctgatact
caagGTAAATTATGACGTGTCAGACGTGGAGTGCTTTTGTAGAAGTCTTT
TATTAATTACTTGGCAAACATTGATAAAAATATACGAAAATATTTACTTG
ACCAAATGTTTCAATCTCAGTCCACTTTTTCtaatttgacagtaaaagta
tGCAGAACAAAAGGAAAACTTTGCAAAGATGTTACAACAGAAGAAGCATG
TCAGGAGAAATTAGACATTGCCAAATCAAACACAACCAAAAAGGAACGCA
GAAGGGCTCGTATGGCTTACAAAAAGTGTGAAGCTTGTGAACAATGTGGT
AAGTCTGNTATGCAGAACAAAAGGAAAACTTTGCAAAGATGTTACAACAG
AAGAAGCATGTCAGGAGAAATTAGACATTGCCAAATCAAACACAACCAAA
AAGGAACGCAGAAGGGCTCGTATGGCTTACAAAAAGTGTGAAGCTTGTGG
ACAATGTGGTAAGTCTGTTGCAAGAATATTctcaaaaaatatggaaaatt
atATTCATCTCTTTTATTTTACATCCTAGCCCAGGGGATGgaatacttag
gcaaaatggttGTCGGATATGTGCAAGTCCCTCAAAGGGATAAAAAAccc
attaaaaagcaattgagtctctgtaaggatttcaaatttatgaaattcaT
AAATCAACTCTAACGAAgcgtcataaattcttgaaatttggacttgAATC
GGAAGTTCTTGTCTTGGGAAATAGTGTCTCTAAGtttggcaaaaacgtca
aaacggacaagattttcaaaattcagtcTGTCTAAGGGCcgttttttgga
ctttaaatCGGACATACCCTTCATCTTACAAAGCTAGTACCCGCAGGCAT
TCCATTGGTAAAAAATAGCTCTCAACATTTTTCGTttgattaattttcaa
aattctttgcaAAACTAGTGATGCCAACTTTACCACCAACAACCCCTCAA
GCCACTGATCCAGATGTTCCAGAACCCACTGTACCTTCAGAAGTTGAGGA
AGGTGAAAGTAgactttttttacatatttttgtctcaaatataTGCTTTG
AAGGAAATTTTGCACTTGGTCAGGCCTTCATCTTGGCcataaatgggctt
ttccagaaaaaaaaccgtataccccctgttgaggaggtccatttccggtC
CAAGGGGGTAAGATTTGATATATGGCGGAATTCCATGGGGAGATActaaa
atctgtcaaaaaaataactggaattccatgggggtagccttttaaatcct
agtaaaattcagaattccagaggggctgaaacctgaaattgcctggaatt
ccagggggttacagcgtttccagccacaaaatgatggacctcctcaacag
ggggtatacgttttttttctggaaaagcccaattgaTAAATACATTGTCC
tttgtttgttattttgttaAGCGCATATTTAGTATAATCCATTTCGTTTT
AAAATCTGGTCAGATCTGCTCTAGTGGTTAACCTggtgacaaaaaaaata
aaaatggtctCATTTCAAGCCGGGATAGGATAATGAATGAGCTTAAgata
cttgaaaaaattttcttctgggTCAGATTATTCTCAAAAAGAAAGTATAG
acgaaaaacaaaacttttttcattctTGACGTTTCGATACTTCTTGTATC
ATGATCACAAGCAAATAGTTAGCTTACAAGCAAAATCGTTTTGAATAATT
ATCTGTATGTGTATGTATGTGTATTTTATGACCCATAATTGCTAgatgtg
attttgaaattttgatttatcaacAGATTTATATGTCTTTACTTTACTTG
AGCTTAGATACCTCGAAATCAGACCCCGTGGAATTTAAAACTTCACCGAG
TCAATGAGACAAGATAAGTCTTTTAATAACCCTTTCTTATCCAAAATact
ttctagattttaatatgGACATGGTTTTCCAATTCAGAAGACAAAATGAG
GAAGGTAAGAAAACTAATGTCTTTTAATCAGGTCACATGATACTTTTAAA
TTTCTGTGGGAAATTTTATggtgatttttcaatttctgaaaGCTCGCATA
TATAATAGCCAAATTTGGAACCTCTATCTGACAAGATTGGGTCAAGCATA
TGGAGATCAATTGGGGAAGAGATGAATATCTTGTATCCCCACCAGAGATT
TGATCCGTATAAAAATATCTAGTCTTGtccattaaaaacaaaatattacc
TATACTCTTTTGCAAATAATCATCCCCTATATCCTCTACGGGTAAGAATT
CTTTGGAGTACTGAGACAAGGGTGTTTTTATATTTCAGCTAAATTTTGTG
CACGTAGCAGAAGCAAGCTTTGCAAAGAAGTTGAGACCGCGGAANGTTTT
TATATTTCAGATAAATTCTGTGCACGTAGCAGAGGCAAGCTTTGTAAAGA
TGTTGAGACCGCGGATGATTGTCAAGGAAAACTTGAACTTTCAACATCGG
TAAACgcaacaaagaaagaaaagaaaagagcaCGAAAAGCTTTCGAACGA
TGCGCTGTTTGTGGCGAATGCAGTAAGTTAAAGATTAAGTAATTTAGTAA
TCATATATCATTCAACGGTTTCTTTAGTTCAAATTATAAATTTGAGTTCA
ATATATTGATCTGTTGATTGGTTCAATTTAGCCGCTATTAAATCAAAAAC
CTTTCATTTCAACCAAACTCTTAAAAGATCTTATTCCTAAGCTACAAACT
TTCATTTAAGGCTATGCTGCTGATGCTTTTTTTTCTTAAGCCGTTTACTT
CTGACAATGGTTATCAGTATAAAATCTTTCACGtgactttttttcacttt
acagAGAAAGCCTGTCGTACGAGAGGCAGACTATGCACAAAAGTGACAAG
TGAAGAAGTTTGCGAAAAGTTGAATGAAATTGCTCAAAACGACAAAGTGC
CTGAAAAGAGACGAAAAAGGGCTTTTGCTGCTTATGAAAGTTGTGAAGTT
TGTGGACAATGCAGTAAGTTTATAACCTTGTATCAAGATGGTTATTGATC
GCATCTAACAGAGATAGGGTATCTAATCAGCATGATTCTGGTTGatgtaa
attttgaattttttaagctAATATAATGGGAAtaatatgattttcaagtt
caaGAAAAGAGTAAGAGTGTAAGATCATTatgaattctcaaaaaatattc
aCTTTTAGCTGTCAAACCGACCAAGCCTCCAACAGCCCAACCATCTGCCT
CACCCTCTGCCAAACCCGAAGGAACTAAAAAACCCGAAAGCACTGCAGAG
CCAGAAGGAACTGAGGCACCCGAAGGAACAGAAGCACCCGAAGGAACTGA
AGAACCAGAAGTAACTGAGGAACCAGAAGGAACTGAGGAGCCAGAAGGCA
CTGAGGAGCCAGAAGGCACTGAGGAGCCAGAAGGCACTGAGGAACCAGAA
GGCACTGAGGAGCCAGAAGGCACTGAGGAACCGGAAGGGACCGAAGAGCC
AGAAGGTTCTGGAGAAGAAGAGGAGTAAAAACGTGATTGAACTTgacatg
tttttaatttttttaaacatttgatACGATGAAAATGGACGACAATTTTA
AATAACACACTTTGTAGACATTAAAGAAGCACGATATTTTGCACTGTTTC
ctttcttttgaaataattttgataattttgatatttttttaacccGTGTT
TTATTTCCCAAATAAACCTGCTGCGCTGAAATGTAAGCCCGAAATGCTAG
TTATACGTGTTTTCTCAAGATAAGGAAATCAATAGAGAAATGGTATGAGT
TGTTTTGCTCAAAAATGATCTTTTAGAACTTGAAACTTTCCAGCTTTACA
TCTTGAAAGCTTGAATATAGAGATAGTTCTATGTAACCTTCCTTAATACA
ACACGAAACGAGTACACAACTGGTACAACTGTGTCTTCTTGCTAAAATAA
GTTTAAAATTGATCTATAAGAGTAATTTGAGCTCTTAGTGTCCAAATTTC
TGcaaagaaaattatcaaattgtAGAAATTTGGACGCTGAGAGTTTCAAA
ACATTCCACTTTCGTTTTTCCACCTCATTCACGAAGCGTTTTAAAAAACG
AGGCATTGTGGGAACTTTTTTTAActgaatatatttttgatgtCTTACTA
CAATGAAAACGGAATAGGAAACCACACGTGTATTCCAATCGGAATAATAA
CTAATACTTGCTTAGGGCTAGCCATTAGCGTTTTTCGGTTCTAGAAACCC
GTTCGTGAACATTTTACCGAAAACGTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043360XLOC_043360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069635-exon-scaffold_503-1491911889:229463..229582TCONS_00069635-exon-scaffold_503-1491911889:229463..229582Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:229463..229582TCONS_00069635-exon-scaffold_503-1510915933:229463..229582Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:229463..229582TCONS_00069635-exon-scaffold_503-1575043694:229463..229582Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:230413..230508TCONS_00069635-exon-scaffold_503-1491911889:230413..230508Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:230413..230508TCONS_00069635-exon-scaffold_503-1510915933:230413..230508Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:230413..230508TCONS_00069635-exon-scaffold_503-1575043694:230413..230508Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:230761..230802TCONS_00069635-exon-scaffold_503-1491911889:230761..230802Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:230761..230802TCONS_00069635-exon-scaffold_503-1510915933:230761..230802Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:230761..230802TCONS_00069635-exon-scaffold_503-1575043694:230761..230802Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:231055..231210TCONS_00069635-exon-scaffold_503-1491911889:231055..231210Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:231055..231210TCONS_00069635-exon-scaffold_503-1510915933:231055..231210Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:231055..231210TCONS_00069635-exon-scaffold_503-1575043694:231055..231210Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:231831..231914TCONS_00069635-exon-scaffold_503-1491911889:231831..231914Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:231831..231914TCONS_00069635-exon-scaffold_503-1510915933:231831..231914Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:231831..231914TCONS_00069635-exon-scaffold_503-1575043694:231831..231914Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:232819..232866TCONS_00069635-exon-scaffold_503-1491911889:232819..232866Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:232819..232866TCONS_00069635-exon-scaffold_503-1510915933:232819..232866Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:232819..232866TCONS_00069635-exon-scaffold_503-1575043694:232819..232866Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:233273..233434TCONS_00069635-exon-scaffold_503-1491911889:233273..233434Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:233273..233434TCONS_00069635-exon-scaffold_503-1510915933:233273..233434Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:233273..233434TCONS_00069635-exon-scaffold_503-1575043694:233273..233434Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:233717..233875TCONS_00069635-exon-scaffold_503-1491911889:233717..233875Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:233717..233875TCONS_00069635-exon-scaffold_503-1510915933:233717..233875Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:233717..233875TCONS_00069635-exon-scaffold_503-1575043694:233717..233875Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:234071..234195TCONS_00069635-exon-scaffold_503-1491911889:234071..234195Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:234071..234195TCONS_00069635-exon-scaffold_503-1510915933:234071..234195Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:234071..234195TCONS_00069635-exon-scaffold_503-1575043694:234071..234195Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1491911889:234232..235142TCONS_00069635-exon-scaffold_503-1491911889:234232..235142Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1510915933:234232..235142TCONS_00069635-exon-scaffold_503-1510915933:234232..235142Clytia hemisphaericaexon
TCONS_00069635-exon-scaffold_503-1575043694:234232..235142TCONS_00069635-exon-scaffold_503-1575043694:234232..235142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:229463..235142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.76158e-05	0	0	0	0	0.0559015	0.621608	0	1.52661e-09	0	0	2.16017e-10	1.61573	0.978599	0	0.062124	12.7324	22.8471	0	0	29.6864	29.5444	34.3762	24.2328	46.0219	66.091	0	0	0	0.0407163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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