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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069632 ID=TCONS_00069632|Name=TCONS_00069632|organism=Clytia hemisphaerica|type=transcript|length=2547bp
CTTACTTAGCTTGTGaaatatgaattaaaaaaaaaaaaattcaaagcgTT
GATTCGTACTTATCGTCAATCGTCAAGGCATCACTTTGATTATTCTAAGT
CTGCCCGTTCTTCTTGATCACTAGCATAGCGTGCAGCTAAAGAGATGTTA
TCAGATTAGCTTTTAATTTTGAGAGCTTGTGTTGTGAATGTCTTAGAAAC
GAATCATGAAATTGTTTACAAGAGGATTAGAAAAATTGTTTCCAAGGTGA
CATGGCAGAGACAACAACTTTAGAGAAAAGTGAAGAATACAAAAAATGGA
CAAAGCTACTCAAGAAAACAACATACATCTCTTATTTACTCAGTTTTCTT
AATGGCTTGGAAGCCAATGCTGTCCTAATTGTACTTTTATATtatttgga
agaaagttttaaaatgacTCCGGACGAAGTAAGACTGTATTACAGTCTAA
CTGAAGCGTTTAACGCTTTAGGGCAAATTTTCAGTGGGTTATTGATGGGA
CGTTATATGGACAGAACAAGGAATTTAAAATTATCctgtttattgatttt
atgTGCTACCATTGTTGGGAATTTATTATATTCATTACCCATCCACGTTT
TGTTTATCATTATTGGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAA
GTTGCTTTTTGTGGCGAATTCAAAAGATGTTATCATAAAGAAGACGAGTT
GATCCAAGTTTTGAGTTGGTATGAACTCTCCAATGCCATTGGCATGGCTG
CTGGACCCGGTGCACCAGTCTTTTTCTCGTGGGTCCACCTCAAAATTGGT
GGATGGATGATCAATAAATACAATGCATTACACGTATTCCTTGTAGTCCT
GTTAGTCCTTTTGTTCGTCATATTATGGTTTCAACTCACTGATCTATCAA
AAGACCTGGATCGTATGAGAGTGAAATTCAACACTATGTNAACTCACTGA
TCTATCAAAAGACCTGGATCGTATGAGAGTGAAATTCAACACTATGTCAA
AATCTTCTCATGATGAACAAGCCTTGGAAGAAAGATCTGGAAGAATAAAC
AGCAGAAAGGACCGTTTAACTACTGGtgaaatttgcaaaagtaacAAGCA
TGCTTCCGTGCCAAAAGGATCACGAAAACTTATGGAATGGAAAGAGCTTT
TGCAAATCGATATCATTTCATTATGTACAAGTTATACCATTATAAGATAT
TGTACTAATGCATCAGCCTCCTTAATTGCAATGAACGCAGCCACATTATT
CCATTGGCCAGTCAATTGGATTTCATGGCTCACCATAGCTGGAGCTGGCA
CTCATTTTCTTGTGATAACAATTCTGATAAAATGCCATGTCTTCAAAGGA
CTCAAAAGTAATTATTTCTTCTACCTATCAGCGTTAAATCTAACTTTGGT
TATGCTTGCTATCATACCATTACCAAGGATTGACAATTTTAAGAGTTACA
CTTTCCAATTACTTTATTTGGCGTTCCTGATGCTTGCTAAAGGATGGACC
TATTTCAATGCCCAGTCAGCAGGGAAGATTTTATTGTTTAACACTGTGAC
GCCAGAAAACTCTTGCCTGATTGACAGTATTAGATCGTCTGCCGGTTCTT
TGGCTCGGCTGTTTGCTTATTCCACGAGTTTCTTATGCTTTAAATATCCA
GGTTATTTTATTTTACCAGCAGGAACTATTTTGTTTATAGGGATTTGTGT
TATAGTTTACAGATATAAAGTTTATCTGTACAAGCAGAGAAAGGGTGTGA
AGTAAAATGCATTTACAACAGTTTATATGGAATACTAATATCCATTATCT
TCATTAAACTTAAACTTATTATTTATGCTATTATATGCACTTTTCATGGA
TTGACAATGTTAAAACTTAAAACTATGGAAGCCGAAAAGAGTCAGCGTGC
AACTTCTTCCGAAAGTTGTCGAGAGTTTTTTAaagctgtcgagatttctt
taaAGCTGTCAAGATTTCTTTAgagctgtcgagatttctttgtAGCGTTC
CCAGAAATTGTCGCGTTCCTAGAAACTGTCGCGTTCCTAGAAATTGTCGC
GTTCCTAAAAACTGTCGCGTCCCCAAAAAGTGTTGCGTTCCCAAAAGGTG
TCGCGTTCTCAAAATCTGACGTGTTCCCAACCAGAAGCTCAATCAAATCA
TAGATTATTTAGGGTGATTCCCAAAGAAACCGCTGGAAATCACTTGCACT
GAAGAATAATGTGGGAAGCGCCAGTTCAATCGGACCTAACTGTTAATTGC
ATGTCCTCTATTAAATCAAAACCTATAATGAACGATGAATTTGACCGACT
ATATTTATTTCGAAATGGCAGATCAAAAGAGAGCAAAAGCGTGTTGTCAT
CGGTCATAAATGTGGTTTCAAGCCACTTGAAGGTGATGTTTTTTgcatct
tttttcaaaaactaacaTGAGCTCGTGCCACAAGGCTACAAAAGAGTATT
CCCTGAGTAACATCTGAAATCACAGTTTTTGCAAATGAGACAATTTTGTG
GGAACGCAACAGcttttgggaacgcgacagtttttggGAAGGCGACa Run BLAST on NCBI transcript from alignment at scaffold_503:217746..222999+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069632 ID=TCONS_00069632|Name=TCONS_00069632|organism=Clytia hemisphaerica|type=transcript|length=5254bp|location=Sequence derived from alignment at scaffold_503:217746..222999+ (Clytia hemisphaerica)
CTTACTTAGCTTGTGaaatatgaattaaaaaaaaaaaaattcaaagcgTT
GATTCGTACTTATCGTCAATCGTCAAGGCATCACTTTGATTATTCTAAGT
CTGCCCGTTCTTCTTGATCACTAGCATAGCGTGCAGCTAAAGAGATGTTA
TCAGATTAGCTTTTAATTTTGAGAGCTTGTGTTGTGAATGTCTTAGAAAC
GAATCATGAAATTGTTTACAAGAGGATTAGAAAAATTGTTTCCAAGGTGA
CATGGCAGAGACAACAACTTTAGAGAAAAGTGAAGAATACAAAAAATGGA
CAAAGCTACTCAAGAAAACAACATACATCTCTTATTTACTCAGTTTTCTT
AATGGCTTGGAAGCCAATGCTGTCCTAATTGTACTTTTATATtatttgga
agaaagttttaaaatgacTCCGGACGAAGTAAGACTGTATTACAGTCTAA
CTGAAGCGTTTAACGCTTTAGGGCAAATTTTCAGTGGGTTATTGATGGGA
CGTTATATGGACAGAACAAGGAATTTAAAATTATCctgtttattgatttt
atgTGCTACCATTGTTGGGAATTTATTATATTCATTACCCATCCACGTTT
TGTTTATCATTATTGGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAA
GTTGCTTTTTGTGGTAAGAAAATTATGGTCCCAGGGcattttctaagcac
ttttttatgtccgtataccggccaaaatactcaatctaagaatgagtttt
tgaaactcaattcaaaaaagaaaagatattttctagcCAAATTGaacttg
tttgttgtttgtgagaaaaaaataactAATATTATCTACAtatattcaaa
agttttttggcAGCTTCGCCCTCTGGACACCCACCAGACCCCAAGCTTCA
TCATTGTACAGTTTCGCTGAGCAAATTCTCTATCAGGCATATTAGAAACT
CaatctttgtttacaaaaacggTCCCAGCTCCAAGTGCTTAGAAAATTCC
CTGTGGTCCGTCTCAAATGTATGCTGATCAACATGAATTTAAACACCGCT
GGAGAGATATTTTCGAGTAGAATAATCTAACAGACAGAAAGTTTAATTCC
ATTATAGCAACTATCTAGTCTTTATAAATAAAACCTTGAGTAATCTgttt
aaaaatcattcaaactAGGGGCCGTCCggatagtacgtacgcactaaggg
ggagggGCTCTTCtcaaagcgtatgcttgcgtacaggcgGAGGGGatggg
tcaaaggaaaatgtacgtacgcagagaaaaatttttcgtagccctttttg
gcttgttttttttgtcgacttttacacttcttatacgcatcaaggaaaag
gaaaagttaaacatTGAGTGGACGGCCCCCTGCTGCAGACCAGATAGTAC
CTTAGACGGAAGTAGACAAGGTATGTCGGTATTACACAAACTCACGGTAC
AATGAATTCGGACATATTTATTTCGtcctttttattttcatcagGCGAAT
TCAAAAGATGTTATCATAAAGAAGACGAGTTGATCCAAGTTTTGAGTTGG
TATGAACTCTCCAATGCCATTGGCATGGCTGCTGGACCCGGTGCACCAGT
CTTTTTCTCGTGGGTCCACCTCAAAATTGGTAggttttaagggctctgac
catagtcgaaaaattctattatttgaacataaaagttatgttttaggttc
tttaagaCTTTTAACATAGAATTGCCTTGATGAattgattttttatcaaa
tccCTTTTTAAAGAGTAAttaagaaattacaaaaaagacgttgtaaactt
taaaaagacgttaataatattttacaattttacattacctaaagtctatt
cacgataagtgtgcactcttttttcatttacctataacctttgaaggaat
tcttcaacctttataaatttggtatcattggaaagatattactgagtgga
acaatttgaaataaaatattttttgagaaaatcctaaaaacaaagatgaa
aatgaagaagaaaaaaatgaagatcttgtagcgAAGtgttataactttca
ttttcactggagtgaatttttgattatcgaacgttatcactgtgaaaaaa
tttctcaaaaataatcattcagtcaaaagatatcaaacaaagttataagc
ttattgacgtctaaaaacgctgttttatgctgttttctgctgttttttgg
ggtcaatcacttgttaactttgtatcatagctttatattgaataaatatt
ttagtgaaatttctctacagtgatgacctcctaaaatcaaagaatctctc
cagtgaaaatgaaagttatagcacttctctaaaagatcttcatttttttc
ttcttcgttttcatcttcgtttttagaatttttttaaaaacttttttatt
tcaaattattccacttacaaatatctctccaacgataccaaatttataaa
gattgaataattccttcaaaagttataggtaaaagaaaaaagagtgcaca
cttatcgtgaatagactttagtaccGTAATTAACCTTTTCGTTTCGAAGT
Tccttcaaactgtccgcaaagaattgtactgttttgacaatttttagttc
ggtaaaagatacaccatttacagcaaacaaaatttcaaaatatattttct
acGCCGAAACTATGCtgttcaaagttgaaatactcttcttcgcaaaagtc
tttattttcttctttatcaaagtttttcattgcgattcttaaattttcag
acacaaggatcagaaaatgtataacataccacagttttgtgggctacatc
aagtagaaatttatattttatacgtggcaaatattaagaattcactatgg
tcacagatatctgtaaagcccgaagggctagatttgcggcttttatcgaa
aagtgaagccgaagtttggaaggatttcctaccaaagtcacgtgactaaa
atatgcaatttcaccggtttgagagatgtgaaatagcgtttgccgcctac
tctTTTCGATCTCGcgctccaaaaacaattaaaatgctagatcctatcca
tcggcacgaaatttaaaaagtcaaatttttgattcacttttttttgctgg
agaaagcttaaagttgcctatctagcccttcgggattagatatctgtggt
cagagcccttaatagtATTGTGGATAGTTAATAAACAGAATCTTTTTTCT
GTACTTAATTGTAATTGTAGCTTTAGCTGGATCATATTGTCGCGACGACT
GTCGGCGATCAAAATTACGATGACGTGGATTTACAGCTACAAGACTATTT
GAAAGCTATACAGTACTCCAAccccaaaaataaaatttcccgTACTtaga
ttaaattttttatttttgaactaCAACTATGCTTTCTTGACCACGACCCT
TTTCATCCCCGTTGCCTTCAACCTCATTCATATTTGGGTCAATAGAATGA
tagttaCTTATATTCCATTTCAGACGTTTAAATTTTTGAGGTTCAATTTT
TGTAGGTGGATGGATGATCAATAAATACAATGCATTACACGTATTCCTTG
TAGTCCTGTTAGTCCTTTTGTTCGTCATATTATGGTTTCAACTCACTGAT
CTATCAAAAGACCTGGATCGTATGAGAGTGAAATTCAACACTATGTNAAC
TCACTGATCTATCAAAAGACCTGGATCGTATGAGAGTGAAATTCAACACT
ATGTCAAAATCTTCTCATGATGAACAAGCCTTGGAAGAAAGATCTGGAAG
AATAAACAGCAGAAAGGACCGTTTAACTACTGGtgaaatttgcaaaagta
acAAGCATGCTTCCGTGCCAAAAGGATCACGAAAACTTATGGAATGGAAA
GAGCTTTTGCAAATCGATATCATTTCATTATGTACAAGTTATACCATTAT
AAGATATTGTACTAATGCATCAGCCTCCTTAATTGCAATGAACGCAGCCA
CATTATTCCATTGGCCAGTCAATTGGATTTCATGGCTCACCATAGCTGGA
GCTGGCACTCATTTTCTTGTGATAACAATTCTGATAAAATGCCATGTCTT
CAAAGGACTCAAAAGTAATTATTTCTTCTACCTATCAGCGTTAAATCTAA
CTTTGGTTATGCTTGCTATCATACCATTACCAAGGATTGACAATTTTAAG
AGTTACACTTTCCAATTACTTTATTTGGCGTTCCTGATGCTTGCTAAAGG
ATGGACCTATTTCAATGCCCAGTCAGCAGGGAAGATTTTATTGTTTAACA
CTGTGACGCCAGAAAACTCTTGCCTGATTGACAGTATTAGATCGTCTGCC
GGTTCTTTGGCTCGGCTGTTTGCTTATTCCACGAGTTTCTTATGCTTTAA
ATATCCAGGTTATTTTATTTTACCAGCAGGAACTATTTTGTTTATAGGGA
TTTGTGTTATAGTTTACAGATATAAAGTTTATCTGTACAAGCAGAGAAAG
GGTGTGAAGTAAAATGCATTTACAACAGTTTATATGGAATACTAATATCC
ATTATCTTCATTAAACTTAAACTTATTATTTATGCTATTATATGCACTTT
TCATGGATTGACAATGTTAAAACTTAAAACTATGGAAGCCGAAAAGAGTC
AGCGTGCAACTTCTTCCGAAAGTTGTCGAGAGTTTTTTAaagctgtcgag
atttctttaaAGCTGTCAAGATTTCTTTAgagctgtcgagatttctttgt
AGCGTTCCCAGAAATTGTCGCGTTCCTAGAAACTGTCGCGTTCCTAGAAA
TTGTCGCGTTCCTAAAAACTGTCGCGTCCCCAAAAAGTGTTGCGTTCCCA
AAAGGTGTCGCGTTCTCAAAATCTGACGTGTTCCCAACCAGAAGCTCAAT
CAAATCATAGATTATTTAGGGTGATTCCCAAAGAAACCGCTGGAAATCAC
TTGCACTGAAGAATAATGTGGGAAGCGCCAGTTCAATCGGACCTAACTGT
TAATTGCATGTCCTCTATTAAATCAAAACCTATAATGAACGATGAATTTG
ACCGACTATATTTATTTCGAAATGGCAGATCAAAAGAGAGCAAAAGCGTG
TTGTCATCGGTCATAAATGTGGTTTCAAGCCACTTGAAGGTGATGTTTTT
TgcatcttttttcaaaaactaacaTGAGCTCGTGCCACAAGGCTACAAAA
GAGTATTCCCTGAGTAACATCTGAAATCACAGTTTTTGCAAATGAGACAA
TTTTGTGGGAACGCAACAGcttttgggaacgcgacagtttttggGAAGGC
GACa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069632-exon-scaffold_503-1491911889:217746..218408 | TCONS_00069632-exon-scaffold_503-1491911889:217746..218408 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1510915933:217746..218408 | TCONS_00069632-exon-scaffold_503-1510915933:217746..218408 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1575043694:217746..218408 | TCONS_00069632-exon-scaffold_503-1575043694:217746..218408 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1491911889:219240..219374 | TCONS_00069632-exon-scaffold_503-1491911889:219240..219374 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1510915933:219240..219374 | TCONS_00069632-exon-scaffold_503-1510915933:219240..219374 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1575043694:219240..219374 | TCONS_00069632-exon-scaffold_503-1575043694:219240..219374 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1491911889:221251..222999 | TCONS_00069632-exon-scaffold_503-1491911889:221251..222999 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1510915933:221251..222999 | TCONS_00069632-exon-scaffold_503-1510915933:221251..222999 | Clytia hemisphaerica | exon |
| TCONS_00069632-exon-scaffold_503-1575043694:221251..222999 | TCONS_00069632-exon-scaffold_503-1575043694:221251..222999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_503 | supercontig | scaffold_503:217746..222999 + |
Blast
The following BLAST results are available for this feature:
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