TCONS_00069629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069629
Unique NameTCONS_00069629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069629 ID=TCONS_00069629|Name=TCONS_00069629|organism=Clytia hemisphaerica|type=transcript|length=1004bp
GAAATATTTTAGCATATTTTATAAATTGGCATCAAAAGGGAAAAGATTTA
TGTAAACTGTATACattatttaaaaatgaaactttgataaaaaatgtCTT
GATTTGAATTTACTGAAAAGAAATCTATTCGGCAATTTCGAATTTTCCGA
ATTTTTGATCAATCACATGTTATAAATTTGTCATCAATTATTGAGCAATA
GACATTTGATGTATGACTTTTTCCACAAtgaaaatcggtgaaattcgaGG
CGTCTTTATGATGTAAATGCATATGTAGTTTGTACAAGAAATTTGTATTG
CACgaatttgattgaaaaagagGATAGAATTTGCAACTGTTATTGGAGTG
ACTTAGATTGGAGAGAAAATGATTGGATTTTTTTTGTTCTTGCATATCAT
TTCAATACTTGTACAACAACAAATTGCAGAACGCATTGGTTTTTACGGAC
ACTTGTCATCTGACGGACAGGAACAGCTTACTGAAAAGATCAATGCAATT
ATTTTCACACCTGTCGAAACTCGAGGATCAACATACACTGGAGGTACTTT
AACCATCAACCAACCCGGAACCTACTTCTACTCATGTACCCTCATCGTCC
AATCAGATTCCGATCAAATCATCCAACTGCAACTCAACCTTAATGATGAG
AAAACCAGCTCATTCAAAAGTTCTTTATATGTCAGCGCAGGAGACTCGAC
AATCTCCAATACAGGTGTTATCCAAGTTATTTCTCAGAATGTCATCCGTA
TATATTTGAAGATCAAATCATCCATCAAGTTACTTCAAAACAGTCATTTC
ATGTTGCATCTGCTATCATCCAAAGGCACACAACAAGCATTCACGGTTCA
AACAACACCTGATGTTTGGCATTACCAAATGAACCATTTAAAAGACGTCA
GTTTCCAAGTCTGGAGTAGCCAGGAAAgtaaaggttgtttttcaaCCACC
AATTTATTAGTACCAGCCAACGGCTTTCTAGTTGCAGAATCAAATGGATT
ATTC
Run BLAST on NCBI

transcript from alignment at scaffold_503:145012..146887+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069629 ID=TCONS_00069629|Name=TCONS_00069629|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at scaffold_503:145012..146887+ (Clytia hemisphaerica)
GAAATATTTTAGCATATTTTATAAATTGGCATCAAAAGGGAAAAGATTTA
TGTAAACTGTATACattatttaaaaatgaaactttgataaaaaatgtCTT
GATTTGAATTTACTGAAAAGAAATCTATTCGGCAATTTCGAATTTTCCGA
ATTTTTGATCAATCACATGTTATAAATTTGTCATCAATTATTGAGCAATA
GACATTTGATGTATGACTTTTTCCACAAtgaaaatcggtgaaattcgaGG
CGTCTTTATGATGTAAATGCATATGTAGTTTGTACAAGAAATTTGTATTG
CACgaatttgattgaaaaagagGATAGAATTTGCAACTGTTATTGGAGTG
ACTTAGATTGGAGAGAAAATGATTGGATTTTTTTTGTTCTTGCATATCAT
TTCAATACTTGTACAACAACAAATTGCAGGTATagaaatatttaattaaa
atgaaaaaacttgacATCTTGAAATAAATTTGGCCATTACCAAGGGTAGA
AGGCCATGATTGGTTTTGATTGTGAAGAGtgatttttttgctttaatcAA
ATGGAAATCAACAGTactagtttttttataagattaaaactatataaaaa
ccaaggcttcgatggctaaaatattaagaaaaagttaagaatattttaag
gcgaAGCATccaagtatgcttataaaatagtaaaattaagaaaattaaag
aacatttatttaggtttaaaactcaaaaagttaagaacatctataggctt
caacaattttggatgttcttataaagaaaaaagactgCTCAACTAAAAGC
TAAATTGTCATATTCTGAAGAAAACATTACCGGTGATTTTATGAGTTAAT
GTTGATAAATTTTTCTCGTTACAGAACGCATTGGTTTTTACGGACACTTG
TCATCTGACGGACAGGAACAGCTTACTGAAAAGATCAATGCAATTATTTT
CACACCTGTCGAAACTCGAGGtataatttcattgaaaaatatttatggcA
AAAGTTATCGAATATATATATCTAGTGACTTTACAAGGTGTGAAcctatt
tttacaattttttcctacAGGGCAATTTTTTAAAACACCTTTTTTACTGA
TCGTTAAACGAATAGCACTTTTAACCGCGACCCTTGCTTGTATTTACGAT
AATCTTTCAATAATTTTCGGCGGGAAGAAATAATTTATATATGTGAAGAA
ATAAGAATTTCTGTCCAACTTTATTCACTCAGGAGATTTGGGTGGCAGAG
CAGCATATGCATTTCGTCCTTATTAGGACTCGTCAGCACTGCATACTGCA
CCCTGGCTGGCTAGATCTCGATTTAGCCAGCATCTCTAAATATTTTTTTA
TTTTTCCTGTAACAATTCTAATTTTTCTTTTTGCTTTTACAAACCAGGAT
CAACATACACTGGAGGTACTTTAACCATCAACCAACCCGGAACCTACTTC
TACTCATGTACCCTCATCGTCCAATCAGATTCCGATCAAATCATCCAACT
GCAACTCAACCTTAATGATGAGAAAACCAGCTCATTCAAAAGTTCTTTAT
ATGTCAGCGCAGGAGACTCGACAATCTCCAATACAGGTGTTATCCAAGTT
ATTTCTCAGAATGTCATCCGTATATATTTGAAGATCAAATCATCCATCAA
GTTACTTCAAAACAGTCATTTCATGTTGCATCTGCTATCATCCAAAGGCA
CACAACAAGCATTCACGGTTCAAACAACACCTGATGTTTGGCATTACCAA
ATGAACCATTTAAAAGACGTCAGTTTCCAAGTCTGGAGTAGCCAGGAAAg
taaaggttgtttttcaaCCACCAATTTATTAGTACCAGCCAACGGCTTTC
TAGTTGCAGAATCAAATGGATTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043358XLOC_043358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069629-exon-scaffold_503-1491911889:145012..145440TCONS_00069629-exon-scaffold_503-1491911889:145012..145440Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1510915933:145012..145440TCONS_00069629-exon-scaffold_503-1510915933:145012..145440Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1575043694:145012..145440TCONS_00069629-exon-scaffold_503-1575043694:145012..145440Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1491911889:145886..145981TCONS_00069629-exon-scaffold_503-1491911889:145886..145981Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1510915933:145886..145981TCONS_00069629-exon-scaffold_503-1510915933:145886..145981Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1575043694:145886..145981TCONS_00069629-exon-scaffold_503-1575043694:145886..145981Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1491911889:146409..146887TCONS_00069629-exon-scaffold_503-1491911889:146409..146887Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1510915933:146409..146887TCONS_00069629-exon-scaffold_503-1510915933:146409..146887Clytia hemisphaericaexon
TCONS_00069629-exon-scaffold_503-1575043694:146409..146887TCONS_00069629-exon-scaffold_503-1575043694:146409..146887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:145012..146887 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.324438	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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