TCONS_00069621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069621
Unique NameTCONS_00069621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069621 ID=TCONS_00069621|Name=TCONS_00069621|organism=Clytia hemisphaerica|type=transcript|length=1020bp
CACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTGACAATGTG
CTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTACTGGAATCAGG
AATCATTGGAAGTAATACCATCACATTGCAGATGAATTCAGATGGAGTGA
AGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCTATCTAAGAATC
AATGAACTTCCTCCTGCATTAAGGAAATTGAAAAAGTTCCGTGTTTTGGT
TGGGATCTGGTTTGGAGAGGAAAAACCTTACATGAGGAGTTTCTTGCGTC
CTTTAGTTGAAATGTTAAAGCAATGGTACTTTCAAGCAAAATGTCTAGTC
CAAGAAACCGTTCAGTTTAATGGATACTATGGGTGCAGTTACTGTGAAAT
CGAGGGAGAACCCATAATGAAATTAAAAGGGACTAAATATGTCAAAACCT
CGACAATTGTTTTTCCTATGAAAACAATGGAAttacCATCAAAGcggaca
aaagaaaaaacaattgcACAAGCAATGGTATCATTGGAAAACAATTTAGT
GGTAAACGGTATTCGAGGCTTGTCTGTATTGGGTAAACTTACATATTATG
ATATTATCTGGGGAGTACCTTTTGATACCATGCATGGAGCTTTTCTGGGT
GTAACAAAaagACTTCTAGGCTTGTGGTTTGACACTGAAAACCATAAAAA
TGCATGGTACCTTGGAAAGGTTTTGAAAACACTCGATTCTGTTTATCTCG
CAATGACACCACCAGATGAAGTATCTAGGCAGCCAAGAAGCATTGTAAAA
CATCGAAATTACTTTAAAGcaaaCGAATTTCGTAATTGGCTATATTATTA
TGGACCAGTTATTATGCTTGGTTTTCTGCCTGAACCATTTTACAGtcatt
ttctattCCTTGTCAAAGGGATATATACTTTACAAAAGCTATCAATAaca
caaaatgaaattgaatctGCTGAGGAAGATTTAAAAGTATTCGTATTTCA
AACAGATAAACTTTATGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_503:68752..73192+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069621 ID=TCONS_00069621|Name=TCONS_00069621|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at scaffold_503:68752..73192+ (Clytia hemisphaerica)
CACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTGACAATGTG
CTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTACTGGAATCAGG
AATCATTGGAAGTAATACCATCACATTGCAGATGAATTCAGATGGAGTGA
AGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCTATCTAAGAATC
AATGAACTTCCTCCTGCATTAAGGTAAATACTCTGATTTTCAacaaatac
attttaaaacacTTCTTCAGGAACTGTCAGGAAATATGAATAGGAAGAAA
ATTGGCTGAGTCGATTAGGTTAAACATTAATTAAAGACAAACTCAACACC
GTAAACCTTCTCTCTTGTTTGGAATGAAATAATCTCATGCTTGTTTTGTC
TTGATCACTATATTTAAATAAAGGAAAATCGAGATTATGAAAAGGTCTCC
AATTTTTAAGGtagtaatatttgagaaaaaaggaaattcccaCCAAAGTT
CAAAAGgaaaggtagagttttaacaaaaatagcctggaagtctataaacc
ccacccaaattgaaatatttgattacATTTAACAGATAGCCCAAAACCAA
CTTTCTCTCCCaaacttcaaatttcaaaaaacaaggaaataaccaaaatt
cccaTATATTTGGACCATGATTGTAGGACCATAGCAAATTTTAGTTAATT
ATTTGTTGCTATATTTTGTAGAAAATATAGCTTCATCAAATTTGTCAAAc
aatattttggaatatttcacATTGTTGAATTTCGATTCTGATCATTCAGG
AAATTGAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAAAA
ACCTTACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCAAT
GGTACTTTCAAGGTAATGACAATGTTTGACCTGCCATAAATCTCCGGGGG
GTACTTAAGCGAATGGAGGGTACGGCATGTCCCGCACTTAAGGAtacctt
ttttttatttccatttccaaagtcccactaGGAGTTGGAAAAAATCACCC
TTGTATTGTAAGGCGCACGCCTAACCAACTGAGCTAACCATGCATTCTTG
TTTCTGGGATTCTTTTGAAAGCTTTTCctcgaaaataaaaatttagattt
tgtgACATAACTTTTTCATAAGCTTCAATAAGCAAAACCTGCCAGAAAAA
CTTTTCACACTATTTTTATGCATATGCATACCTAAGGTATCCAATTAACT
TACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTTAGCTCATTGTT
TGATCTCCccggtatgtttttttttcaattgaaataaataaattgataAG
GTACTCTTGTAACCAAAGCATAGTGATTTGCCCTGATAGGAGCTCAATGT
ACCCAGACTTATTTATTACACTAATACTCAAGTATTTAACGTgcacaaaa
aagacaaaaggaagaaaattaaaaaagaaaattaaaactagCAAGGGGTG
ATTTgtatttgtatttatctttaaTCAAAGTTCATTTAAATAATATTAAT
CCAATCTCTTCTTATATTAAAGCAAAATGTCTAGTCCAAGAAACCGTTCA
GTTTAATGGATACTATGGGTGCAGTTACTGTGAAATCGAGGGAGAACCCA
TAATGAAATTAAAAGGGACTAAATATGTCAAAACCTCGACAATTGTTTTT
CCTATGAAAACAATGGAAttacCATCAAAGcggacaaaagaaaaaacaat
tgcACAAGCAATGGTATCATTGGAAAACAATTTAGTGGTAATCATGTTTA
TCAAAACGTAATTTTATGAATAATCACATCAGAACGATATAGGTTATAGA
TAtttctaaaaattgttataaagcAAGATTTAAGATTTCATGTAGTATGA
AAATCTACTtgtttgtgaaaatttaatggtttaCACTTTTaatgaaagct
tttttccttttcaGGTAAACGGTATTCGAGGCTTGTCTGTATTGGGTAAA
CTTACATATTATGATATTATCTGGGGAGTACCTTTTGATACCATGCATGG
AGCTTTTCTGGGTGTAACAAAGTATAGTAGTTCTTTCACTCCTTTAATAC
AGGATGTATGTAATGTATTGTAATTtgatgtttatttttattttggttat
ttgaactgagtaatatcaagttaaaCATTTCAGATCTTAAAATATATGCA
ACCTAACAATTTGGCTAAAATAGATGGGAGAGTTTGCTTTGAAGCATAGG
TATAAAGATGACTTTATCTTTGAAAACGTAGTTTACCTTTGAAATAAggg
aatttttaaaattcaagtTAGGATGGCCNAACCTAACAATTTGGCTAAAA
TAGATGGGAGAGTTTGCTTTGAAGCATATGTATAAAGatgactttatttt
tgaaaacgtaGTTTACCTTTGAAATAAggcaatttttaaaattcaggtTG
GGATGGCATAAGGGGTTGGAGGGGTCTTTCCCATAATGAAGCTTAAATTc
tcttgttttattatttttagaagACTTCTAGGCTTGTGGTTTGACACTGA
AAACCATAAAAATGCATGGTACCTTGGAAAGGTTTTGAAAACACTCGATT
CTGTTTATCTCGCAATGACACCACCAGATGAAGTATCTAGGCAGCCAAGA
AGCATTGTAAAACATCGAAATTACTTTAAAGGTTATCAATTTAATACCAG
ATAATTATTTTCTTTGGGGTTTAGGGGTTTTGTCGAATATTAATTCTTAC
ATGTCAATTTCACCTCATTTCAACACTGAAAGGACACTTTAACGAGAATC
CTTTTTATGTTTAATAAATTTTTATGTTTATCCTTTATTCAATTATACAA
TAAGATTATTTATAATTTGAGCTCCTCTTTGATGATTGTACTACCCTATA
ACATGTGATATTTTGAAAGGTTCaaatgttgtttattttttatttataaa
atattaataataactagccggtacccggcgtcgcacgccggtttaactgt
ttgctgaacgcatttaaagtcctttggatgttgggaaggtggcataaaca
cgatgaaatcaaaattaaagagaagaattctcttcaaagtttgactctat
ccctcctgggtgacgtatcttttaaccatattttgaaaaagatttttgtg
gcaaaaatgatcagaaaacagaaaaagggcgccattcccaaattacacca
taccggcgaccagcgacgtccgagacggctttgaaattagatttttttgN
agtttttaccgccttttgaatttatttttaatgttgctgttgttctaaca
aacttgtcttgtgattattatgttttattttatatttgttcttttcttta
acagattctgtttaaaagattttcttttgttttgaaaagaattcgaatgt
ctcaaatcaaataaggtcgttaattacattcgaaaacataaaacaaaaaa
aaagaaagaaaaaaaaagacaaagtcacatctatcaatcaaaacaaagtc
tttataaaacggcgcgaatctgatttaacacatttgtggagcaagaaaca
aaagtcatcttttaaaagaacaaaacattgcttgcgaaaacgaaagtgac
acacaaacaaaatgacatacagactacggctattaatatatagattatta
TAATATTAATAATAGATTTCCTTGAGCCTTACTCTTgtgtacctaatagc
cggggtttggaaaaaaatctgaaaacttaATAAGTAGGAGGTTGGAAtca
aaatgtcctgggtggagaatttttaaaaaggagactaatacagcagaatt
accttaaagaaattcaataatttaatttttgttattttttcaaattcagc
aaaCGAATTTCGTAATTGGCTATATTATTATGGACCAGTTATTATGCTTG
GTTTTCTGCCTGAACCATTTTACAGGTATACAGTCTATTCAAAAGACTAT
GGATTTTTAAATTGACTCCTCTTCAAAACTATAATAGTGATGTCACTATG
GTTAGAAGGTTGAGGAACTTTCAAAGGTTTCTTTGTCTTCTAAAACTTGT
CTTTTGATTTAGATTTTGTGCAGCGTTCCCAAAAATAAGCAATTTTGAAC
CCTTTCTTTGCGAAAAGGGGTGTAAAAATTAATGGTAAAGGATTTAATTA
CAGTGACTCAAATCCAGGGGGCAGACATTCTATATGAAAGCTAAAAAGGC
CTTTGAATTGTTTGATATCCAATTACATTTTATCGGTACTaaataattaa
attaatttACTTCATGAGAAGTTCAAGAATGGTATTTATTGATAATGCGT
GTCTCTTCtattttagtcattttctattCCTTGTCAAAGGGATATATACT
TTACAAAAGCTATCAATAacacaaaatgaaattgaatctGCTGAGGAAGA
TTTAAAAGTATTCGTATTTCAAACAGATAAACTTTATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043356XLOC_043356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069621-exon-scaffold_503-1491911889:68752..68974TCONS_00069621-exon-scaffold_503-1491911889:68752..68974Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:68752..68974TCONS_00069621-exon-scaffold_503-1510915933:68752..68974Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:68752..68974TCONS_00069621-exon-scaffold_503-1575043694:68752..68974Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:69551..69663TCONS_00069621-exon-scaffold_503-1491911889:69551..69663Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:69551..69663TCONS_00069621-exon-scaffold_503-1510915933:69551..69663Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:69551..69663TCONS_00069621-exon-scaffold_503-1575043694:69551..69663Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:70324..70538TCONS_00069621-exon-scaffold_503-1491911889:70324..70538Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:70324..70538TCONS_00069621-exon-scaffold_503-1510915933:70324..70538Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:70324..70538TCONS_00069621-exon-scaffold_503-1575043694:70324..70538Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:70716..70822TCONS_00069621-exon-scaffold_503-1491911889:70716..70822Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:70716..70822TCONS_00069621-exon-scaffold_503-1510915933:70716..70822Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:70716..70822TCONS_00069621-exon-scaffold_503-1575043694:70716..70822Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:71272..71432TCONS_00069621-exon-scaffold_503-1491911889:71272..71432Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:71272..71432TCONS_00069621-exon-scaffold_503-1510915933:71272..71432Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:71272..71432TCONS_00069621-exon-scaffold_503-1575043694:71272..71432Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:72601..72676TCONS_00069621-exon-scaffold_503-1491911889:72601..72676Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:72601..72676TCONS_00069621-exon-scaffold_503-1510915933:72601..72676Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:72601..72676TCONS_00069621-exon-scaffold_503-1575043694:72601..72676Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1491911889:73068..73192TCONS_00069621-exon-scaffold_503-1491911889:73068..73192Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1510915933:73068..73192TCONS_00069621-exon-scaffold_503-1510915933:73068..73192Clytia hemisphaericaexon
TCONS_00069621-exon-scaffold_503-1575043694:73068..73192TCONS_00069621-exon-scaffold_503-1575043694:73068..73192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:68752..73192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.903444	0.537465	0.268305	0	5.83352	8.59314	5.42576	3.94662	4.60766	3.95349	7.01261	3.48924	3.99735	0.00605457	0.727568	0.81278	0	0.725194	3.64408	1.71867	0.00116674	0.630374	0.840031	0	1.21431	4.66956	0	0.477988	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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