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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069616 ID=TCONS_00069616|Name=TCONS_00069616|organism=Clytia hemisphaerica|type=transcript|length=2662bp
ATCCTATCAAATAtcatataatatataatataaaagtCTCTAAATCTCTA
AAAACACTACGATTCCACTGTCAACATAAAATTGATggtagaaaataaaa
ttctaaTTTAATTCAATAAGAATTTGATTTTCCTTCAATGGAACTGCTAG
AATAATTTTGTCAGAAATTggacaaacacaaaacaaaaatacaagaGATT
ACGATGTCAATTGACTAAAAAACGTGCTTCTAAAAAAACTAGTACAAATA
ACGAGAAAATGATAGATCATTGGTCATAATGTTTGTAATAAGGTGTTCAT
ATCAATGTTTGTAATATCCGAAGAACCATTTCACTGTATTCATAAAGAAA
TCACCTTGaactttcacatttttcaaaggATGCGATCCTTCAGGATAAGA
AATCAGTTTTACAGTTTTACCATTCCCCTTGAGTACTCTGTAGAAAGCTT
TTCCTTGAGATGGGGGCACTCTTGCATCTTTTTCACCAACGAAAATTAAA
ATAGGGTTTTTAATTTTCCCAACATTTACGATAGGGGATTTACCTAACAT
CGTGGAAAAATCAGCCTCGGTTGGGATTTTTCCTTGGTTGTATTCAAGCC
CACTTTCGAAGTAACTCCAATCAGGTATATCTGATAGTAAAGACATTGAT
GAAATTTCGATAACAGGATTCCTTATCGCAGCTGCTCGATAGAAATCAGG
ATATTGACCCATCAAATGTGCTCCTAGAAAGCCACCATGAGATCCTCCAA
AATAAAATACATTATTTTCATCAAGTCTGCCTTTGAATTTGGCAATGCAT
GCTGTCACCATCGCTTGAACCTCGATGACATCTCTTGAGCCGATTTTACC
AGGTAGCTCAAGCAATGACTTTTTGGAAAAGCTTGTGGAGCCAGTATAAT
TCACAAGCAATACAGCAAATCCAAGCTGACAAAAAGCAGTAACAAGGGGA
TCATAATCAATTGTAAAAACGGTATGTGGCCCTCCATGAGCCCAAACAAT
CAAAGGCATTTTCTCAGCAGAGCTATTTCGAGGATACACAACCCATGAAC
AAATATTGGGAATGTCTCTAAGAAGGATCTTTGAATAATCTGTTTTCATA
GTGAACTCGAGAGGTTTTACTTGGTGCCTGACAAATGTTCCCTCTGAAGC
CTTATGTTCATAAAGCACAAGTACCATTTCATTCATACCAAGGATTGACG
AACACCAAATTGCAAATGAGTTGACAACACCAAATAATCTAAAGCATTGG
TTATCAGATTTCATCACGTTTCCTGACACAGTATTCACTACCACAATGTG
ACTCAAACCATCACGTTTAATTTGAAAAGCAATATGCAAGTTGTCATCAA
ACCATATTTGTGATGGGAAGTTTGTTATGAACATTGGCTCTAATTCTACT
TTGGATAgttttttggaagaaaaatcaCAAGTGTAGATAACTGAATCAGT
ACCATGTGGATTTCCTTCTTCAGCAAGGGGACAATgcatgaaaacaaatt
tttcaaaagaattgttAACTCTTGGACACCAATTGTTGCTTTTACCTTGA
ACGATATTCTTAGTTATATTTTGAGCAGATTGCACTTTGAATTCACTGTC
ATACTCAAGGACAAAAATATTACTTTCACGGTTTTCACAGTAAAATTTTC
CAAGTCGAAAAGGCTCCTTTTTGTACCCACAAACAACAATTGAGTTATTA
GGACCCCATTGTGGTTGTGCAAGAGAGTAGCTTTCAAGGTCTTCATGCTC
TAAAGTGTAAAGTGTCTCAGAAGGAACATCAAAAATGCATATTGTTGGTG
TTATTATGTCATAGAGCATCTCTCCCCAGCTTTCTTCATAATCATATTGG
TTGCCAATATTTGTTTCCAAACTTGCTTCCCCTTGTTCAAAAAATCCACG
AGATCGAGGCTTTTTCTTTTCAGCAACATAGAGAAGTTTCTCTTCTTTTT
GATCCCAAGTGAATGAAGAAAAGAATAAATCAGCATGTACAATTCCATGT
TTAGCATGTGCAGATAAATCCACAGTTTTGATCAATCTCGACATGGACCA
TACCTCAAGAAAGTAGCATTGCGTGTTTTGCTTTGTGGATTTCTTAATGA
CTGCCCTTTTCTCTTTCGATTTACTGACTGTCTCTAGAAGGATTTCATTA
CTTAAATCGGATGGAAATCCAATAGATTCGAATTCAGACTTTTCAGTGTC
GAGCTTGTAAGACGTTGAGAAGTTCTTCTTTTGCAAAGCAGCATGATCAT
TCTGTTGCCAAATCAAACGAAAGGTTGCCTTCCCTTCTTCACTTTGATCT
ACAAAAACTGAATCAATCATAGGAATAGATGCATCTTGGAACACCTTTGC
AGCATTTTCAAGAGACAACTCCATTGTAATGATCTTTTTCTATTGATACT
ATTGATAAACAGCcacttttgactttttggtCTTGTCGTCTTGTCACACG
TGTAGAAAAAGCTCAAATGAATTTTACTGCGGTGgtttttactttcactt
tcgattttaaagTTAACGCCCTATCTAGATGgaatttaggcttttttaac
agCCGGTTTACACTGAGAAAAGGAAAAATCGGGACATAACCGGGTAAAAT
TGTGGAGAACAAAAAGAACAAGTGCAAATGCCGCACATGCGCACACCCCC
CCCCGGACCGGG Run BLAST on NCBI protein sequence of TCONS_00069616-protein >TCONS_00069616-protein ID=TCONS_00069616-protein|Name=TCONS_00069616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=690bp
MELSLENAAKVFQDASIPMIDSVFVDQSEEGKATFRLIWQQNDHAALQKK
NFSTSYKLDTEKSEFESIGFPSDLSNEILLETVSKSKEKRAVIKKSTKQN
TQCYFLEVWSMSRLIKTVDLSAHAKHGIVHADLFFSSFTWDQKEEKLLYV
AEKKKPRSRGFFEQGEASLETNIGNQYDYEESWGEMLYDIITPTICIFDV
PSETLYTLEHEDLESYSLAQPQWGPNNSIVVCGYKKEPFRLGKFYCENRE
SNIFVLEYDSEFKVQSAQNITKNIVQGKSNNWCPRVNNSFEKFVFMHCPL
AEEGNPHGTDSVIYTCDFSSKKLSKVELEPMFITNFPSQIWFDDNLHIAF
QIKRDGLSHIVVVNTVSGNVMKSDNQCFRLFGVVNSFAIWCSSILGMNEM
VLVLYEHKASEGTFVRHQVKPLEFTMKTDYSKILLRDIPNICSWVVYPRN
SSAEKMPLIVWAHGGPHTVFTIDYDPLVTAFCQLGFAVLLVNYTGSTSFS
KKSLLELPGKIGSRDVIEVQAMVTACIAKFKGRLDENNVFYFGGSHGGFL
GAHLMGQYPDFYRAAAIRNPVIEISSMSLLSDIPDWSYFESGLEYNQGKI
PTEADFSTMLGKSPIVNVGKIKNPILIFVGEKDARVPPSQGKAFYRVLKG
NGKTVKLISYPEGSHPLKNVKVQGDFFMNTVKWFFGYYKH Run BLAST on NCBI transcript from alignment at scaffold_502:140788..143449 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069616 ID=TCONS_00069616|Name=TCONS_00069616|organism=Clytia hemisphaerica|type=transcript|length=2662bp|location=Sequence derived from alignment at scaffold_502:140788..143449 (Clytia hemisphaerica)
CCCGGTCCGGGGGGGGGTGTGCGCATGTGCGGCATTTGCACTTGTTCTTT
TTGTTCTCCACAATTTTACCCGGTTATGTCCCGATTTTTCCTTTTCTCAG
TGTAAACCGGctgttaaaaaagcctaaattcCATCTAGATAGGGCGTTAA
ctttaaaatcgaaagtgaaagtaaaaacCACCGCAGTAAAATTCATTTGA
GCTTTTTCTACACGTGTGACAAGACGACAAGaccaaaaagtcaaaagtgG
CTGTTTATCAATAGTATCAATAGAAAAAGATCATTACAATGGAGTTGTCT
CTTGAAAATGCTGCAAAGGTGTTCCAAGATGCATCTATTCCTATGATTGA
TTCAGTTTTTGTAGATCAAAGTGAAGAAGGGAAGGCAACCTTTCGTTTGA
TTTGGCAACAGAATGATCATGCTGCTTTGCAAAAGAAGAACTTCTCAACG
TCTTACAAGCTCGACACTGAAAAGTCTGAATTCGAATCTATTGGATTTCC
ATCCGATTTAAGTAATGAAATCCTTCTAGAGACAGTCAGTAAATCGAAAG
AGAAAAGGGCAGTCATTAAGAAATCCACAAAGCAAAACACGCAATGCTAC
TTTCTTGAGGTATGGTCCATGTCGAGATTGATCAAAACTGTGGATTTATC
TGCACATGCTAAACATGGAATTGTACATGCTGATTTATTCTTTTCTTCAT
TCACTTGGGATCAAAAAGAAGAGAAACTTCTCTATGTTGCTGAAAAGAAA
AAGCCTCGATCTCGTGGATTTTTTGAACAAGGGGAAGCAAGTTTGGAAAC
AAATATTGGCAACCAATATGATTATGAAGAAAGCTGGGGAGAGATGCTCT
ATGACATAATAACACCAACAATATGCATTTTTGATGTTCCTTCTGAGACA
CTTTACACTTTAGAGCATGAAGACCTTGAAAGCTACTCTCTTGCACAACC
ACAATGGGGTCCTAATAACTCAATTGTTGTTTGTGGGTACAAAAAGGAGC
CTTTTCGACTTGGAAAATTTTACTGTGAAAACCGTGAAAGTAATATTTTT
GTCCTTGAGTATGACAGTGAATTCAAAGTGCAATCTGCTCAAAATATAAC
TAAGAATATCGTTCAAGGTAAAAGCAACAATTGGTGTCCAAGAGTTaaca
attcttttgaaaaatttgttttcatgcATTGTCCCCTTGCTGAAGAAGGA
AATCCACATGGTACTGATTCAGTTATCTACACTTGtgatttttcttccaa
aaaacTATCCAAAGTAGAATTAGAGCCAATGTTCATAACAAACTTCCCAT
CACAAATATGGTTTGATGACAACTTGCATATTGCTTTTCAAATTAAACGT
GATGGTTTGAGTCACATTGTGGTAGTGAATACTGTGTCAGGAAACGTGAT
GAAATCTGATAACCAATGCTTTAGATTATTTGGTGTTGTCAACTCATTTG
CAATTTGGTGTTCGTCAATCCTTGGTATGAATGAAATGGTACTTGTGCTT
TATGAACATAAGGCTTCAGAGGGAACATTTGTCAGGCACCAAGTAAAACC
TCTCGAGTTCACTATGAAAACAGATTATTCAAAGATCCTTCTTAGAGACA
TTCCCAATATTTGTTCATGGGTTGTGTATCCTCGAAATAGCTCTGCTGAG
AAAATGCCTTTGATTGTTTGGGCTCATGGAGGGCCACATACCGTTTTTAC
AATTGATTATGATCCCCTTGTTACTGCTTTTTGTCAGCTTGGATTTGCTG
TATTGCTTGTGAATTATACTGGCTCCACAAGCTTTTCCAAAAAGTCATTG
CTTGAGCTACCTGGTAAAATCGGCTCAAGAGATGTCATCGAGGTTCAAGC
GATGGTGACAGCATGCATTGCCAAATTCAAAGGCAGACTTGATGAAAATA
ATGTATTTTATTTTGGAGGATCTCATGGTGGCTTTCTAGGAGCACATTTG
ATGGGTCAATATCCTGATTTCTATCGAGCAGCTGCGATAAGGAATCCTGT
TATCGAAATTTCATCAATGTCTTTACTATCAGATATACCTGATTGGAGTT
ACTTCGAAAGTGGGCTTGAATACAACCAAGGAAAAATCCCAACCGAGGCT
GATTTTTCCACGATGTTAGGTAAATCCCCTATCGTAAATGTTGGGAAAAT
TAAAAACCCTATTTTAATTTTCGTTGGTGAAAAAGATGCAAGAGTGCCCC
CATCTCAAGGAAAAGCTTTCTACAGAGTACTCAAGGGGAATGGTAAAACT
GTAAAACTGATTTCTTATCCTGAAGGATCGCATcctttgaaaaatgtgaa
agttCAAGGTGATTTCTTTATGAATACAGTGAAATGGTTCTTCGGATATT
ACAAACATTGATATGAACACCTTATTACAAACATTATGACCAATGATCTA
TCATTTTCTCGTTATTTGTACTAGTTTTTTTAGAAGCACGTTTTTTAGTC
AATTGACATCGTAATCtcttgtatttttgttttgtgtttgtccAATTTCT
GACAAAATTATTCTAGCAGTTCCATTGAAGGAAAATCAAATTCTTATTGA
ATTAAAttagaattttattttctaccATCAATTTTATGTTGACAGTGGAA
TCGTAGTGTTTTTAGAGATTTAGAGacttttatattatatattatatgaT
ATTTGATAGGAT Coding sequence (CDS) from alignment at scaffold_502:140788..143449 >TCONS_00069616 ID=TCONS_00069616|Name=TCONS_00069616|organism=Clytia hemisphaerica|type=CDS|length=2073bp|location=Sequence derived from alignment at scaffold_502:140788..143449 (Clytia hemisphaerica)
ATGGAGTTGTCTCTTGAAAATGCTGCAAAGGTGTTCCAAGATGCATCTAT
TCCTATGATTGATTCAGTTTTTGTAGATCAAAGTGAAGAAGGGAAGGCAA
CCTTTCGTTTGATTTGGCAACAGAATGATCATGCTGCTTTGCAAAAGAAG
AACTTCTCAACGTCTTACAAGCTCGACACTGAAAAGTCTGAATTCGAATC
TATTGGATTTCCATCCGATTTAAGTAATGAAATCCTTCTAGAGACAGTCA
GTAAATCGAAAGAGAAAAGGGCAGTCATTAAGAAATCCACAAAGCAAAAC
ACGCAATGCTACTTTCTTGAGGTATGGTCCATGTCGAGATTGATCAAAAC
TGTGGATTTATCTGCACATGCTAAACATGGAATTGTACATGCTGATTTAT
TCTTTTCTTCATTCACTTGGGATCAAAAAGAAGAGAAACTTCTCTATGTT
GCTGAAAAGAAAAAGCCTCGATCTCGTGGATTTTTTGAACAAGGGGAAGC
AAGTTTGGAAACAAATATTGGCAACCAATATGATTATGAAGAAAGCTGGG
GAGAGATGCTCTATGACATAATAACACCAACAATATGCATTTTTGATGTT
CCTTCTGAGACACTTTACACTTTAGAGCATGAAGACCTTGAAAGCTACTC
TCTTGCACAACCACAATGGGGTCCTAATAACTCAATTGTTGTTTGTGGGT
ACAAAAAGGAGCCTTTTCGACTTGGAAAATTTTACTGTGAAAACCGTGAA
AGTAATATTTTTGTCCTTGAGTATGACAGTGAATTCAAAGTGCAATCTGC
TCAAAATATAACTAAGAATATCGTTCAAGGTAAAAGCAACAATTGGTGTC
CAAGAGTTaacaattcttttgaaaaatttgttttcatgcATTGTCCCCTT
GCTGAAGAAGGAAATCCACATGGTACTGATTCAGTTATCTACACTTGtga
tttttcttccaaaaaacTATCCAAAGTAGAATTAGAGCCAATGTTCATAA
CAAACTTCCCATCACAAATATGGTTTGATGACAACTTGCATATTGCTTTT
CAAATTAAACGTGATGGTTTGAGTCACATTGTGGTAGTGAATACTGTGTC
AGGAAACGTGATGAAATCTGATAACCAATGCTTTAGATTATTTGGTGTTG
TCAACTCATTTGCAATTTGGTGTTCGTCAATCCTTGGTATGAATGAAATG
GTACTTGTGCTTTATGAACATAAGGCTTCAGAGGGAACATTTGTCAGGCA
CCAAGTAAAACCTCTCGAGTTCACTATGAAAACAGATTATTCAAAGATCC
TTCTTAGAGACATTCCCAATATTTGTTCATGGGTTGTGTATCCTCGAAAT
AGCTCTGCTGAGAAAATGCCTTTGATTGTTTGGGCTCATGGAGGGCCACA
TACCGTTTTTACAATTGATTATGATCCCCTTGTTACTGCTTTTTGTCAGC
TTGGATTTGCTGTATTGCTTGTGAATTATACTGGCTCCACAAGCTTTTCC
AAAAAGTCATTGCTTGAGCTACCTGGTAAAATCGGCTCAAGAGATGTCAT
CGAGGTTCAAGCGATGGTGACAGCATGCATTGCCAAATTCAAAGGCAGAC
TTGATGAAAATAATGTATTTTATTTTGGAGGATCTCATGGTGGCTTTCTA
GGAGCACATTTGATGGGTCAATATCCTGATTTCTATCGAGCAGCTGCGAT
AAGGAATCCTGTTATCGAAATTTCATCAATGTCTTTACTATCAGATATAC
CTGATTGGAGTTACTTCGAAAGTGGGCTTGAATACAACCAAGGAAAAATC
CCAACCGAGGCTGATTTTTCCACGATGTTAGGTAAATCCCCTATCGTAAA
TGTTGGGAAAATTAAAAACCCTATTTTAATTTTCGTTGGTGAAAAAGATG
CAAGAGTGCCCCCATCTCAAGGAAAAGCTTTCTACAGAGTACTCAAGGGG
AATGGTAAAACTGTAAAACTGATTTCTTATCCTGAAGGATCGCATccttt
gaaaaatgtgaaagttCAAGGTGATTTCTTTATGAATACAGTGAAATGGT
TCTTCGGATATTACAAACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069616-exon-scaffold_502-1491911889:140788..143449 | TCONS_00069616-exon-scaffold_502-1491911889:140788..143449 | Clytia hemisphaerica | exon |
| TCONS_00069616-exon-scaffold_502-1510915933:140788..143449 | TCONS_00069616-exon-scaffold_502-1510915933:140788..143449 | Clytia hemisphaerica | exon |
| TCONS_00069616-exon-scaffold_502-1575043694:140788..143449 | TCONS_00069616-exon-scaffold_502-1575043694:140788..143449 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:140788..143449 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008236 | serine-type peptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0008236 |
serine-type peptidase activity |
Blast
BLAST of TCONS_00069616 vs. Swiss-Prot (Human)
Match: ACPH (Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4) HSP 1 Score: 300.442 bits (768), Expect = 1.286e-88 Identity = 206/697 (29.56%), Postives = 329/697 (47.20%), Query Frame = -1
Query: 323 WQQNDHAALQKKNFSTSYKLDTEKSEFESIGFPSDLSNEI-----LLETVSKSKEKRAVIKKS--TKQNTQCYFLEVWSMSRLIKTVDLSAHAKHGIVHADLFFSSFTWDQKEEKLLYVAEKKKPRSRGFFEQGEASLETN--------------IGNQYDYEESWGEMLYDIITPTICIFDVPSETLYTLEHEDLESYSLAQPQWGPNNS-IVVCGYKKEPFRLGKFYCENRESNIFVLEY-DSEFKVQSAQNITKNIVQGKSNNWCPRVNNSFEKFVFMHCPLAEEGNPHGTDSVIYTCDFSSKKLSKV----------ELEPMFITNFPSQIWFDDNLHIAFQIKRDGLSHIVVVNTVSGNVMK----SDNQCFRLFGVVNSFAIWCSSI--------------LGMNEMVLVLYEHKASEGTFVRHQVKPLEFTMKTDYSKILLRDIPNICSWVVYPRNSSAEKMPLIVWAHGGPHTVFTIDYDPLVTAFCQLGFAVLLVNYTGSTSFSKKSLLELPGKIGSRDVIEVQAMVTACIAKFKGRLDENNVFYFGGSHGGFLGAHLMGQYPDFYRAAAIRNPVIEISSMSLLSDIPDWSYFESGLEYNQGKIPTEADFSTMLGKSPIVNVGKIKNPILIFVGEKDARVPPSQGKAFYRVLKGNGKTVKLISYPEGSHPLKNVKVQGDFFMNTVKWF 2260
W Q D ++ F Y + + +S+ F N + LL S S +AV++K+ T + FLEVW +R +K+ +LSA KHG V+ D F +W E LLYVAEKK+P++ FF+ + + G+Q+ + E WGE + P +C+ DV S + LE E+ S Q W P ++ +V G+ EPFRLG +C NR S ++ ++ + ++ S ++ + PR++ + V++ P PH S + D+ +K S V ++ + P W D+ + F + + V+T G V ++L + + S G + VL + +A + ++ L+ + + + D I P + + ++P++V HGGPH+ F + C++GFAVLLVNY GST F + S+L LPG +G +DV +VQ V + + D ++V GGSHGGF+ HL+GQYP+ YRA RNPVI I+SM +DIPDW E+G ++ +P + ++ ML KSPI + ++K P+L+ +G++D RVP QG +YR LK V+L+ YP+ +H L V+V+ D FMN V W
Sbjct: 50 WTQRDLERMENIRFCRQYLVFHDG---DSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAGGTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVESGNISVLEGVP-ENVSPGQAFWAPGDAGVVFVGWWHEPFRLGIRFCTNRRSALYYVDLIGGKCELLSDDSLAVS---------SPRLSPDQCRIVYLQYPSL---IPHHQCSQLCLYDWYTKVTSVVVDVVPRQLGENFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEAEPIPDIHWGIRVLQPPPEQENVQYAGLDFEAILLQPGSPPDKT--QVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQE--EHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYIPQVKTPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLWL 726
The following BLAST results are available for this feature:
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