TCONS_00069615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069615
Unique NameTCONS_00069615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069615 ID=TCONS_00069615|Name=TCONS_00069615|organism=Clytia hemisphaerica|type=transcript|length=1308bp
GAAATagaattttttgttaaatattcAATTCCAAATAACTattgaaaata
taatatatGGTTTAATGACAACTTATTTCTACTTATTTTTAGGCTGTTAT
TAAAAATGTATTCATTGCTAAGACAAAGACTGATTACTGTTAACCGACCT
GTCTTATCATCTTGGTTCCATCTTTCTGTGAATGTGTCAAGTAAGAAAAA
GTCTTCTCTGaaagatttgattgaaaatatttctaacAAGGAAACTAATC
AATACTTGGATAACCTTGTGAAAAATGTTCAAGATCAGAATCAAAAAAAG
CAGCAAAGAAAACAATATGCTATCAAAAAGGCTCagatgaagaaagaaaa
aatgaatgattTTGACAGTTCAACAAAAGAAGTTGGCCAAAAATTTTGGT
TTCCTGAAACTGAAAAAACAAAGAGTGAGAAATCTAGAAAACAAGCCAAG
AACAAGAAACCAgctaaaaaagaaatgaaatcagAAACAATGGAGGGAAG
TCCTGATATAGGGGTGGATACAGAATCTGAATTGGATATTGGTGTATTGA
GGGAAAAGATAAAGAGTGACCACAACAATAGAGAGGTATCAAGATTGATG
AGTGCTATGATTGATAGGATAGATCAAGGTGCAGATGATGTTGaagttaa
ttttcaaaaattagtgaAGTCTTTCAGTAATACTGACCAAAGgagaaaag
gaaaacaaaacttGAGAAATCAAGATTCATCAAAGACAACACAGCGCAGA
ACTCCACCCAAGCTGTCCTTCAATAATCCTACttctttatttacaaattt
atcaAATGATACACAAGAGATTGCCAGACCAAATTACTTCGAATCCAACT
GGAACAAAGATCTAAATAATTTGCTCCCAGAGATGAAGCCCTTGAATGCT
TTTGATGCGAAAATGTTAAACATTGATCGAGAATGGAATTTTCCAATTGA
CAATGAACAAGATATTGGAATTGAGGAGGAAACTGGTTTTGATGAACATG
TTTTTCTTGATCATCTTCTTGAGGAATTTCCTGAAGAGGGACCTGTCTAT
AAATTTATTGAATTAGTTATAACAGGACTTCAACAGAATCCACATTTGAC
AGTGGAAGAAAAGACTAATCAAGTTTTATGGTTCaaagaatattttgata
aatttcctGAAGATgacttaaaaatttcaaatttagagTTTTAGTCtggt
taaatattttttataggtAGAATGACATATATATCATGATTGTTTTGTTA
AATACATGAATTTAGTTTTATAGATTTCCTTTAAACTCGGCCTTAGTCTT
TGTCTTGG
Run BLAST on NCBI

protein sequence of TCONS_00069615-protein

>TCONS_00069615-protein ID=TCONS_00069615-protein|Name=TCONS_00069615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MYSLLRQRLITVNRPVLSSWFHLSVNVSSKKKSSLKDLIENISNKETNQY
LDNLVKNVQDQNQKKQQRKQYAIKKAQMKKEKMNDFDSSTKEVGQKFWFP
ETEKTKSEKSRKQAKNKKPAKKEMKSETMEGSPDIGVDTESELDIGVLRE
KIKSDHNNREVSRLMSAMIDRIDQGADDVEVNFQKLVKSFSNTDQRRKGK
QNLRNQDSSKTTQRRTPPKLSFNNPTSLFTNLSNDTQEIARPNYFESNWN
KDLNNLLPEMKPLNAFDAKMLNIDREWNFPIDNEQDIGIEEETGFDEHVF
LDHLLEEFPEEGPVYKFIELVITGLQQNPHLTVEEKTNQVLWFKEYFDKF
PEDDLKISNLEF
Run BLAST on NCBI

transcript from alignment at scaffold_502:107073..108380

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069615 ID=TCONS_00069615|Name=TCONS_00069615|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at scaffold_502:107073..108380 (Clytia hemisphaerica)
CCAAGACAAAGACTAAGGCCGAGTTTAAAGGAAATCTATAAAACTAAATT
CATGTATTTAACAAAACAATCATGATATATATGTCATTCTacctataaaa
aatatttaaccaGACTAAAActctaaatttgaaatttttaagtcATCTTC
aggaaatttatcaaaatattctttGAACCATAAAACTTGATTAGTCTTTT
CTTCCACTGTCAAATGTGGATTCTGTTGAAGTCCTGTTATAACTAATTCA
ATAAATTTATAGACAGGTCCCTCTTCAGGAAATTCCTCAAGAAGATGATC
AAGAAAAACATGTTCATCAAAACCAGTTTCCTCCTCAATTCCAATATCTT
GTTCATTGTCAATTGGAAAATTCCATTCTCGATCAATGTTTAACATTTTC
GCATCAAAAGCATTCAAGGGCTTCATCTCTGGGAGCAAATTATTTAGATC
TTTGTTCCAGTTGGATTCGAAGTAATTTGGTCTGGCAATCTCTTGTGTAT
CATTtgataaatttgtaaataaagaaGTAGGATTATTGAAGGACAGCTTG
GGTGGAGTTCTGCGCTGTGTTGTCTTTGATGAATCTTGATTTCTCaagtt
ttgttttccttttctcCTTTGGTCAGTATTACTGAAAGACTtcactaatt
tttgaaaattaacttCAACATCATCTGCACCTTGATCTATCCTATCAATC
ATAGCACTCATCAATCTTGATACCTCTCTATTGTTGTGGTCACTCTTTAT
CTTTTCCCTCAATACACCAATATCCAATTCAGATTCTGTATCCACCCCTA
TATCAGGACTTCCCTCCATTGTTTctgatttcatttcttttttagcTGGT
TTCTTGTTCTTGGCTTGTTTTCTAGATTTCTCACTCTTTGTTTTTTCAGT
TTCAGGAAACCAAAATTTTTGGCCAACTTCTTTTGTTGAACTGTCAAaat
cattcattttttctttcttcatctGAGCCTTTTTGATAGCATATTGTTTT
CTTTGCTGCTTTTTTTGATTCTGATCTTGAACATTTTTCACAAGGTTATC
CAAGTATTGATTAGTTTCCTTgttagaaatattttcaatcaaatctttCA
GAGAAGACTTTTTCTTACTTGACACATTCACAGAAAGATGGAACCAAGAT
GATAAGACAGGTCGGTTAACAGTAATCAGTCTTTGTCTTAGCAATGAATA
CATTTTTAATAACAGCCTAAAAATAAGTAGAAATAAGTTGTCATTAAACC
atatattatattttcaatAGTTATTTGGAATTgaatatttaacaaaaaat
tctATTTC

Coding sequence (CDS) from alignment at scaffold_502:107073..108380

>TCONS_00069615 ID=TCONS_00069615|Name=TCONS_00069615|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_502:107073..108380 (Clytia hemisphaerica)
CTAAAActctaaatttgaaatttttaagtcATCTTCaggaaatttatcaa
aatattctttGAACCATAAAACTTGATTAGTCTTTTCTTCCACTGTCAAA
TGTGGATTCTGTTGAAGTCCTGTTATAACTAATTCAATAAATTTATAGAC
AGGTCCCTCTTCAGGAAATTCCTCAAGAAGATGATCAAGAAAAACATGTT
CATCAAAACCAGTTTCCTCCTCAATTCCAATATCTTGTTCATTGTCAATT
GGAAAATTCCATTCTCGATCAATGTTTAACATTTTCGCATCAAAAGCATT
CAAGGGCTTCATCTCTGGGAGCAAATTATTTAGATCTTTGTTCCAGTTGG
ATTCGAAGTAATTTGGTCTGGCAATCTCTTGTGTATCATTtgataaattt
gtaaataaagaaGTAGGATTATTGAAGGACAGCTTGGGTGGAGTTCTGCG
CTGTGTTGTCTTTGATGAATCTTGATTTCTCaagttttgttttccttttc
tcCTTTGGTCAGTATTACTGAAAGACTtcactaatttttgaaaattaact
tCAACATCATCTGCACCTTGATCTATCCTATCAATCATAGCACTCATCAA
TCTTGATACCTCTCTATTGTTGTGGTCACTCTTTATCTTTTCCCTCAATA
CACCAATATCCAATTCAGATTCTGTATCCACCCCTATATCAGGACTTCCC
TCCATTGTTTctgatttcatttcttttttagcTGGTTTCTTGTTCTTGGC
TTGTTTTCTAGATTTCTCACTCTTTGTTTTTTCAGTTTCAGGAAACCAAA
ATTTTTGGCCAACTTCTTTTGTTGAACTGTCAAaatcattcattttttct
ttcttcatctGAGCCTTTTTGATAGCATATTGTTTTCTTTGCTGCTTTTT
TTGATTCTGATCTTGAACATTTTTCACAAGGTTATCCAAGTATTGATTAG
TTTCCTTgttagaaatattttcaatcaaatctttCAGAGAAGACTTTTTC
TTACTTGACACATTCACAGAAAGATGGAACCAAGATGATAAGACAGGTCG
GTTAACAGTAATCAGTCTTTGTCTTAGCAATGAATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043351XLOC_043351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069615-proteinTCONS_00069615-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069615-exon-scaffold_502-1491911889:107073..108380TCONS_00069615-exon-scaffold_502-1491911889:107073..108380Clytia hemisphaericaexon
TCONS_00069615-exon-scaffold_502-1510915933:107073..108380TCONS_00069615-exon-scaffold_502-1510915933:107073..108380Clytia hemisphaericaexon
TCONS_00069615-exon-scaffold_502-1575043694:107073..108380TCONS_00069615-exon-scaffold_502-1575043694:107073..108380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:107073..108380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.2988	55.2472	17.3252	12.945	16.4993	10.1483	14.7337	16.7465	8.54183	9.56957	8.63434	4.6869	5.92562	6.845	7.73555	7.53424	21.1077	11.7985	3.50026	2.69322	15.3563	10.9613	80.2457	66.023	11.4377	15.5283	12.2614	10.9126	42.3873	55.4152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026299MRP-S31
Vocabulary: Cellular Component
TermDefinition
GO:0005763mitochondrial small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005763 mitochondrial small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00069615 vs. Swiss-Prot (Human)
Match: RT31 (28S ribosomal protein S31, mitochondrial OS=Homo sapiens GN=MRPS31 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 2.531e-17
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  934 WNFPIDNEQDIGIEEETGFDEHVFLDHLLEEFPEEGPVYKFIELVITGLQQNPHLTVEEKTNQVLWFKEYFDKFPEDDLKISNLEF 1191
            W FPI+NE     ++ + F EH+FL+  LE FP++GP+  F+ELV  GL +NP+L+V++K   + WF+ YF++  +D LK SN++F
Sbjct:  311 WEFPINNEAGFD-DDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNE-KKDILKESNIQF 394
The following BLAST results are available for this feature:
BLAST of TCONS_00069615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT312.531e-1744.1928S ribosomal protein S31, mitochondrial OS=Homo s... [more]
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