TCONS_00069614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069614
Unique NameTCONS_00069614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069614 ID=TCONS_00069614|Name=TCONS_00069614|organism=Clytia hemisphaerica|type=transcript|length=917bp
atttttggtcaacgagtgatctaagaaactccaaatttggccctgtttta
ctttattctgtcctcTTGGCACCTTTCCgtcattcagtcaggtccgcgca
gcaaAAATGTCGATTGTTTTTTCACTGGTTGCGACATCAGAGGCCTCTCC
TAGTTGTAGAAAAGAGAAAATCATGTTTGTTAGCtaaattggaaattttt
ctgTCATTTTTGTTTGTTGGTCGGTAAGCTGTTTTGGTTTCCAATGGGAC
AAACAATGGAGATTATTCTTGTCGGGGGAACTATTCAGTCAGTATCCATC
TCACTAACCTAATTTACGTATTATATCGAATCGTTCGACCCTGACCCTTC
ACTAGACACGACAGACGAATGGTCGTCGATGACGACTTCGTTGAGAGTCT
CATGGGACTCGTCGGACTCTTCACTACTAGACACAACAGACGAATGATCG
TCAATGACGACTTCGTTGAAAGTTTTGTCGGATTCGTCGGACTCTTCACT
AGACTCGACGTCATTAGCCTCTCCTGTAGTTGTAGAAAAGTGAAAGTTAT
GTCTTTTAGCTAAATAGAAAATTGTTTCTGTTATGTATCGTTCGGCAAGG
AAAACAATAGAGATTTTTCTTGTCGTGGTAAGATTTTCATCAATAATATC
TGACCACCCTAGTTGGCCGATGACGGAGTCACACTTGTCCACAAAGCCCA
TATTTTGATTGTAGTCTTAAACAAGCTGTTGCTTCATAACGTCATCGCCA
TTCCGACGTTTTTTGGATAGTACGACTAACTTTGGTCGGTGCATCGttta
aagaaaatagacttcctTGGAATTTTGCAGTCTCATTGCATGGAGTTTCC
CGTCGACAATGTGTTTCGTTTCTCCCTTATTTAATTTCCCTGACGTAAAT
TCTTTCGGGAAGTTCGG
Run BLAST on NCBI

protein sequence of TCONS_00069614-protein

>TCONS_00069614-protein ID=TCONS_00069614-protein|Name=TCONS_00069614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MGFVDKCDSVIGQLGWSDIIDENLTTTRKISIVFLAERYITETIFYLAKR
HNFHFSTTTGEANDVESSEESDESDKTFNEVVIDDHSSVVSSSEESDESH
ETLNEVVIDDHSSVVSSEGSGSNDSI
Run BLAST on NCBI

transcript from alignment at scaffold_502:100304..101220

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069614 ID=TCONS_00069614|Name=TCONS_00069614|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at scaffold_502:100304..101220 (Clytia hemisphaerica)
CCGAACTTCCCGAAAGAATTTACGTCAGGGAAATTAAATAAGGGAGAAAC
GAAACACATTGTCGACGGGAAACTCCATGCAATGAGACTGCAAAATTCCA
aggaagtctattttctttaaaCGATGCACCGACCAAAGTTAGTCGTACTA
TCCAAAAAACGTCGGAATGGCGATGACGTTATGAAGCAACAGCTTGTTTA
AGACTACAATCAAAATATGGGCTTTGTGGACAAGTGTGACTCCGTCATCG
GCCAACTAGGGTGGTCAGATATTATTGATGAAAATCTTACCACGACAAGA
AAAATCTCTATTGTTTTCCTTGCCGAACGATACATAACAGAAACAATTTT
CTATTTAGCTAAAAGACATAACTTTCACTTTTCTACAACTACAGGAGAGG
CTAATGACGTCGAGTCTAGTGAAGAGTCCGACGAATCCGACAAAACTTTC
AACGAAGTCGTCATTGACGATCATTCGTCTGTTGTGTCTAGTAGTGAAGA
GTCCGACGAGTCCCATGAGACTCTCAACGAAGTCGTCATCGACGACCATT
CGTCTGTCGTGTCTAGTGAAGGGTCAGGGTCGAACGATTCGATATAATAC
GTAAATTAGGTTAGTGAGATGGATACTGACTGAATAGTTCCCCCGACAAG
AATAATCTCCATTGTTTGTCCCATTGGAAACCAAAACAGCTTACCGACCA
ACAAACAAAAATGAcagaaaaatttccaatttaGCTAACAAACATGATTT
TCTCTTTTCTACAACTAGGAGAGGCCTCTGATGTCGCAACCAGTGAAAAA
ACAATCGACATTTttgctgcgcggacctgactgaatgacGGAAAGGTGCC
AAgaggacagaataaagtaaaacagggccaaatttggagtttcttagatc
actcgttgaccaaaaat

Coding sequence (CDS) from alignment at scaffold_502:100304..101220

>TCONS_00069614 ID=TCONS_00069614|Name=TCONS_00069614|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_502:100304..101220 (Clytia hemisphaerica)
ATGGGCTTTGTGGACAAGTGTGACTCCGTCATCGGCCAACTAGGGTGGTC
AGATATTATTGATGAAAATCTTACCACGACAAGAAAAATCTCTATTGTTT
TCCTTGCCGAACGATACATAACAGAAACAATTTTCTATTTAGCTAAAAGA
CATAACTTTCACTTTTCTACAACTACAGGAGAGGCTAATGACGTCGAGTC
TAGTGAAGAGTCCGACGAATCCGACAAAACTTTCAACGAAGTCGTCATTG
ACGATCATTCGTCTGTTGTGTCTAGTAGTGAAGAGTCCGACGAGTCCCAT
GAGACTCTCAACGAAGTCGTCATCGACGACCATTCGTCTGTCGTGTCTAG
TGAAGGGTCAGGGTCGAACGATTCGATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043350XLOC_043350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069614-proteinTCONS_00069614-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069614-exon-scaffold_502-1491911889:100304..101220TCONS_00069614-exon-scaffold_502-1491911889:100304..101220Clytia hemisphaericaexon
TCONS_00069614-exon-scaffold_502-1510915933:100304..101220TCONS_00069614-exon-scaffold_502-1510915933:100304..101220Clytia hemisphaericaexon
TCONS_00069614-exon-scaffold_502-1575043694:100304..101220TCONS_00069614-exon-scaffold_502-1575043694:100304..101220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:100304..101220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200439	0.439785	0.0567369	0.388557	0.540607	0.320396	0.193272	0.241252	0.506719	0.622142	0.0507679	0.0667457	0.599876	0.242269	0.227632	0.183213	0.112852	0.0771129	0.0532678	0.278705	0.145347	0.283581	0.172365	0.261174	0.161402	0.0960316	0.412263	0.513308	0.333708	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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