TCONS_00069612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069612
Unique NameTCONS_00069612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069612 ID=TCONS_00069612|Name=TCONS_00069612|organism=Clytia hemisphaerica|type=transcript|length=576bp
GTCGGCGAGATACTGTTGAAGTTCAGCCACAgtccatttttcaaagtccT
CTTTAGTCATTGAATCAGATTCAGGTTTGATGGGCAAAACCTTGATACTT
CCTGCTGCTGAAAATATCATATAATAAATATTTCTATTAGGCTAAAAAAG
CTGCGATCTTCTTATTGATCAACTTACGGGGTATCGACCTTGAGAAGGGT
TTCGATCCTACCCAGACCTTTCTCTTCCATTGCGATTAACAGCCGTCTCA
GCTTCTTCTCCTGCTCTCCTTGTCTTTTGGCTCGCAGAACTAACTTCTTT
TCAAGTATTATCTTCCCTGAAAGAAGAGAGCCAGCCTTGCCCAAAAGTTT
CATACTAGTAATCACAACCTTGTCGTTCTCCTCGGCCGACTATGGGTCCT
TTGGCACCTCCTTGCAGTTCCTTTTGTAAACTTgtactgaaaattaaaac
aatttaaacAATCATTAAAAACCTTAAATACAATAACACTCGTCGTCTTT
CTCAAATAGTATCATTGAATGACAAAGAAAATCTAGTTTCAAACAGCAAT
ACCAAGGCAAGCCTCTATTATTGAGC
Run BLAST on NCBI

transcript from alignment at scaffold_502:67641..68216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069612 ID=TCONS_00069612|Name=TCONS_00069612|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at scaffold_502:67641..68216 (Clytia hemisphaerica)
GCTCAATAATAGAGGCTTGCCTTGGTATTGCTGTTTGAAACTAGATTTTC
TTTGTCATTCAATGATACTATTTGAGAAAGACGACGAGTGTTATTGTATT
TAAGGTTTTTAATGATTgtttaaattgttttaattttcagtacAAGTTTA
CAAAAGGAACTGCAAGGAGGTGCCAAAGGACCCATAGTCGGCCGAGGAGA
ACGACAAGGTTGTGATTACTAGTATGAAACTTTTGGGCAAGGCTGGCTCT
CTTCTTTCAGGGAAGATAATACTTGAAAAGAAGTTAGTTCTGCGAGCCAA
AAGACAAGGAGAGCAGGAGAAGAAGCTGAGACGGCTGTTAATCGCAATGG
AAGAGAAAGGTCTGGGTAGGATCGAAACCCTTCTCAAGGTCGATACCCCG
TAAGTTGATCAATAAGAAGATCGCAGCTTTTTTAGCCTAATAGAAATATT
TATTATATGATATTTTCAGCAGCAGGAAGTATCAAGGTTTTGCCCATCAA
ACCTGAATCTGATTCAATGACTAAAGAggactttgaaaaatggacTGTGG
CTGAACTTCAACAGTATCTCGCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043348XLOC_043348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069612-exon-scaffold_502-1491911889:67641..68216TCONS_00069612-exon-scaffold_502-1491911889:67641..68216Clytia hemisphaericaexon
TCONS_00069612-exon-scaffold_502-1510915933:67641..68216TCONS_00069612-exon-scaffold_502-1510915933:67641..68216Clytia hemisphaericaexon
TCONS_00069612-exon-scaffold_502-1575043694:67641..68216TCONS_00069612-exon-scaffold_502-1575043694:67641..68216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:67641..68216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0966696	0.0942681	0.109454	0	0.391093	0.412063	0.497136	0.581766	0.162923	0.201807	0.489696	0	0.32146	0.734446	0.274461	0.706893	0.217709	0.371907	0.411048	0.215066	0.186931	0.273536	0	0.100769	0.622739	1.01893	0.662766	0.707322	0.536479	0.218635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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