TCONS_00069610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069610
Unique NameTCONS_00069610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069610 ID=TCONS_00069610|Name=TCONS_00069610|organism=Clytia hemisphaerica|type=transcript|length=368bp
CTTTCAGGATCATTATTTCAGGCTCTTGCTCCCATTGCACTTCTCTACTT
TTCACAGGTTTTTCTCATCCATATTTTGGTGTCCCGATTTTCTAGGACCG
CCACAAGCTGCAATAGAACAGCTCTTCGTTTTCcaggaatttcttttttt
tcccgAACAGATGATTTATTTCCAGTAGTGTCCTAATACACGACAGCTAG
TTTTTTAATGAGAAATGGGTCACAGGAACAGATAATTCATGTGGCTTTGT
TAGTGGCTGCTTTTGACTGGTGTTTTAACGTTTGATTGCCAGGTTAGAAA
TCCAATTGGTGACGGATGGTTGTTCCGTGCAGGAATACTTCAAATCCATG
CTATGCTTTGTGGTTATC
Run BLAST on NCBI

transcript from alignment at scaffold_502:63659..64026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069610 ID=TCONS_00069610|Name=TCONS_00069610|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_502:63659..64026 (Clytia hemisphaerica)
GATAACCACAAAGCATAGCATGGATTTGAAGTATTCCTGCACGGAACAAC
CATCCGTCACCAATTGGATTTCTAACCTGGCAATCAAACGTTAAAACACC
AGTCAAAAGCAGCCACTAACAAAGCCACATGAATTATCTGTTCCTGTGAC
CCATTTCTCATTAAAAAACTAGCTGTCGTGTATTAGGACACTACTGGAAA
TAAATCATCTGTTcgggaaaaaaaagaaattcctgGAAAACGAAGAGCTG
TTCTATTGCAGCTTGTGGCGGTCCTAGAAAATCGGGACACCAAAATATGG
ATGAGAAAAACCTGTGAAAAGTAGAGAAGTGCAATGGGAGCAAGAGCCTG
AAATAATGATCCTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043346XLOC_043346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069610-exon-scaffold_502-1491911889:63659..64026TCONS_00069610-exon-scaffold_502-1491911889:63659..64026Clytia hemisphaericaexon
TCONS_00069610-exon-scaffold_502-1510915933:63659..64026TCONS_00069610-exon-scaffold_502-1510915933:63659..64026Clytia hemisphaericaexon
TCONS_00069610-exon-scaffold_502-1575043694:63659..64026TCONS_00069610-exon-scaffold_502-1575043694:63659..64026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:63659..64026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.446261	0.652762	0	0.247169	0.601808	0.475557	0.573739	1.07425	0.188028	0.931611	1.35637	0.445811	0.593588	0.462335	0.760205	1.08776	1.50753	1.03011	2.84631	0.49641	1.07868	0	0.511674	1.16296	1.19783	1.06903	0.917868	1.3061	1.48594	0.756971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top