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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069581 ID=TCONS_00069581|Name=TCONS_00069581|organism=Clytia hemisphaerica|type=transcript|length=1606bp
CAAAACTGCTTGGTATGTCGAattTCACCGAACTCCTCATTTCGTATTTG
CTCGCCAAACCAAACGTTCAGcaataataacaacaacgacaatAACAATA
TAGTACGAAAGTCCAAGAAACCACATTGGAACACAAGCACTCGCTTACAT
CACATGGACCCTCATTTATCACAAGAAGTCACTATGGATGTTTTCTCATT
AACACGCGAAATCCACACGCCCATCGGCCCGCCCATGAACGCCTCTGAAC
GCGCCACAACGCCCAAAGACGATAAACCAATGTTACCTTTGAAGAGAAGT
GATATTTTACCGAAtgtaaaaatttacaatttgtgGAGTCAACACTTGTC
TAAAGATCAGATAACAGCAGAAGCGGCTTGGAACAGGTGTCGCTTGATCA
CCGAAGAAGCGTTGGAGAAGTTTGGTGAACGGTTAGACTTCTTGGAGAAT
GTGGCTGCATGGGAAATCACAGCTGAAATCTTATTGGAATTCCAATCGCT
GGAAGAAAAGAAAGGTGAAATAGAGGCTGGTTTGTTTGAAGTTGAAGATT
ACGATATTGAAATCAAAGAAGTTGCCAAAGCAACACAGAACGTCGCGCAG
TATCTCGCTCCCATTGAAGAGAGAGAAGAACTCAAAATGAAGATCGTTAC
TCTAAGACGACgttatttcaaagttttacaaGAATTATGCAAGAAGAAGG
AACTTTTCAGATGGTTGTTACCCTTGTTAGAGCAGTACCGCGACCAAGGA
TGTGATATTAAGAGTTGGCTTGATGTCACGGAGTCACGAACTGAATTTCT
CACATCAAATTTCAATAATAATGAAATTATTgtcaaaaatgaagatttga
tcGAGGAAATCAAAGAAGAACTTTTCGTGCAAAAAGATGCTTACGAAGAC
TTCTTAAATGCCAGTGAAGGAATCATGGATTTGTTATCAagtgatgatga
cgtcatcattcaaATTCGGACAGACCATGACCACGTGGTCTCAAGATGGG
ACACTTTGTGTAGCAACATTGAGAAGTGTTTGAACAGATTGGTATATGCA
AAGAAGGTGTTATCAGAACAATCGAGAACGATCAATACCGACCCTGAGAA
GATCGAGAAAAAGATTCGTAACGAAGCAAAACAATGTACTTGTCATAAAC
CTTTTCAAATCACTCGTGTTGGTGAAGGGAAATATACATTTGGAACTTCC
AAGATTGTGCGGTTAGTTCGTGTCCATNTCGACGAACTCTTACTACGGTA
AAAATGTAGGAAAGATGTTTATCACTAACCCCAACTCTGTTCGTTTTATA
ACTTCTTGTAGGTTATGAAGTTCTTGATGTGTATTTAGAGTTNGTGTTGG
TGGTGGATGGGAATATTTGTACGACTTCCTGTTCAAAGCTGATCCATGTC
GTGGTAAGTCCAAactctttctcaaaaaatatttttgttctgatttcata
agagcatgaacatataaacgactggacatccatctcctttgtctttttgt
agaaagggctgctagcttcattgccgcctcgttaaaagcataaaatgaaa
caatagattttgatgatataccacttgggagtaccttgctaacaacgtca
aaactt Run BLAST on NCBI transcript from alignment at scaffold_502:166103..173220- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069581 ID=TCONS_00069581|Name=TCONS_00069581|organism=Clytia hemisphaerica|type=transcript|length=7118bp|location=Sequence derived from alignment at scaffold_502:166103..173220- (Clytia hemisphaerica)
CAAAACTGCTTGGTATGTCGAGTGTGTTGATTTATGCAACGAATTTGTAG
TGTTTCGAGTTGCTTTATCGATGGGATCAATTTGTTATTTTAAGTGATAA
GATATACCATGTTGTTGATAGGCTACTGTGTGTCAATTTTCATCTGCCTT
GACATGCTTTTAAAGCGTTTTTGACTTTTCGAATATACAATACAATAGCT
GACTTATTGCGATAACTTTGTTGTCTTCTCGCTCTAATAGATACAGGGTA
GCAATGACCTCACCAAGACTGCTTTTCTACCAAAGTTGAAGAATTCAATT
TTGATTTTAGTGTTTAGTTGAAATAAAGTTTAAGTCAGTTATATTGCTTC
AGTAGAGATAGTTGGGAAAGACACCAAAGTCTTAAGCCACTATAGTTAAA
GACATTATATGAGATTGGTGTCTTGTATTATCAATTTCCTTCAATTTGAA
TCATAAATCTAGATTTTTGTTTCGGAGATCAGACAGGCTTAAGACGAGTC
AATCATAATAAGAAGTATTAAGTCGACTTTGTTTGAAATGCTTACTTTCG
AGCTTCCTTCCTCGTTGTTCTGTCTTTTTTGATCTTCTTTTTGGTTTCTC
ATTTATATAGCTGGTAAAATATTTTGACAAAACTACTGAATCATCGTACT
TTTCCGCTTTAGACCTACGCTTATGTTCGACTTTTCCTTCTAGTTACGAA
AACTCTCTATAGAGACCTCTTTTCATCAGGATATGATACCTAAGTGTGAT
AAACCTGCAATCGACATTATCTAAGAGATTGAGTCAGACTCGTGTTTAAC
TTCCCAATGAGTTAAGCAAACATTTAAATTTGAGAGACATAAATTTTTTT
GTGTTTTTCGATATCAAATTTTTACTCTAGCGGTTAGTCTATAGGTTAAT
TCTTGGTGCTAGGATAGTCGGTTTTCAAGTCTTGTTTTGACGTGGTTGGT
TTCGTGTAGTTCTCTAGTGCTATTGCTGTTAGATAACTGGTTTGAATTTC
TTGAATATAAAACTACGAGTCTTTGACCCTTTTTAAAAGAGACTTGGGTC
AGGTTATTACTTTATTATTTTTGAAGTTAGTTAAGAAATGGAACGGACTT
GGTTCAGAATTATCCCGCATAGTGCCGAAACATATGTCTGCTTTTTTACA
GGAATTCGTAAGAGCTTTAAAAACAATCTGAACATCACATTTTCAAAAAT
GACCTGACCTTTCTTAAATACGAGGCATTCAACCAACCCGTTTTTGAGCT
TTCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGTTATACGG
ACGTTGTTTTGAACATTAGATACACGTTTTTTTTTTTATAAGAACAAACT
ATATAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGA
ACATTCTAAGGCTTTGGAGACTTAAAAACGTGCATTTTCTTAAGAAATTA
CATCAAAATGCTCATAAAAAATGCTGCAAATAAGAACATTTTAAGAACAT
TTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTCGAAAAT
TTTTGACGTTCTTATAAAAAAAAAAACGTGTAAACGTTGAAACAACGCTG
GGTTGAGTAGAAATAATGATCACATTTGGAATGTATTTCACTTTGTAAAT
TTCGAAAATTAAGAACAACCAAAGAATTTACTGGTTCTCGTAAAGAAGCG
TGTACTTTCTTTGAAATATCTTAACCAATAAGTAAAAACATCCTTTCAGG
GTTGATTCTAAAGTGAATTTTTCTTTGTTTTTCAACACACAGTTCTGATT
TCCCTCAGTTGCTTTTGTTTTTGTCCGTGTAGTGAAGATGTAATAATAAT
ATTATGTATTACGGATATTCGTAGTTTCCTCATAACATACTATCGCATAA
CTGTCCTCTTTTCTCTTTCAATTTTTTTTGGCAACTTTGATGTAACGTGT
TACACAATACTAAAAGAAGTTGAAAAGGTGATGAAATTATTTGTAAAGAT
TTGAATTTGATGAAGAACTTTTACTGAGAAAAGGAAATATTAATTTCCAT
AATTCTTGGAGTAGTCTAAGAGTTTAAGCAGTGGTATCAACTAAATGACT
AAAATCACTTGATTTTCTGTATTTTTTATTTTGGGGTACTTCAACATTCC
CATTGCTTTATGGTGGGTAAGATTTGCTTTTAAGAAAGTTTGAGACTTGA
ATTTCTGAAAGACTTGTTAGTCCATCGATTGAAAATGAATTTCTCTTCAT
TCGGCTATTCTCTTTGTGTCTTTTCTTCATCTCGACATGAAAAGTCTATT
TCCCTTTAGCGAACTACACGTTTTTTTTTTTATAAGGAACACGTTTATAA
GGAACTCGAGGGTGAAAATGGTTCAAAAAATAAGGAATTGTTAAGGAACT
GCTCAGGCTGAGAATAAGTGGATTTGAAAATAATATACCTTATTGGGACT
AATTTGACCAAATTTTCATCTTTCAAGGAGCAAAAAGTTCAAAATTTCCT
ATGTAGAAAGGAACTCGATAAGGAAGTTTGAGACTGAAATTCTCTGTAAA
AATAAAGAACTCCAGGCTCAGAGCAAAGTTAAGGTTCCTTATAAAAAAAA
AACGTGTAGTGTTCTGCTACACGAGATCATTTTCTCTCACAAAGTTATAT
TCTTAGACCTCAACATGTTTTTTCTCGGCACCGTAAGAAGTTCAAACCTT
CTCATGTATGAGAACCATTTTTCTTCTCTTTCTCGTCTGCTACCTACCCT
TAATTCTTCCTTTGAGGTTGTCTTCTGACGTCTACAAAAGAGTTTGTCTT
ATAATAGTGGTTACATTGTCTCGAAACTTCAGTCCTTGTGATGGGTGAAA
TCGAAAGATTAGCTGAAGATTTCTACACCCTATCTTTCTCTTTTATCGAG
GAAGTGTTATTTTTGGTAAGACGAAACTGTTCGAATTGTTTTTAAAGACA
TTGATAATTGCTGGTCGTTTGGGTTGTTTCGCTGCAATTAAAACGTTTGA
AACCTTACTTTGAAGGCAGTAGGAAGTCAACGAATCTTGTTTAATTTTAC
TTAAGATTTTTCAGCTGTTTGCTTTTAGTGATCTCTGATTTTGTTTATCG
TGGGTTTTTAATCTTGATTACCCGTGAAATAGCTTTTAATTGATTGCTAA
GTACGTCTCGTGAAGCATCATTTGAGGTTTTATCTGAAGTCTGGTCAAAA
TAAAGCAGAGTTTTAAACTGTTGTAATGTTCTACTTTACAATAGTGAATA
TTGTGTATTCTTGATGTTTTTTTTTTTAAATAACCGAACGCATTTTTAGT
ATTGGATTTTAAACCTTCGAATACTTAACATGTTGTTTAAGCACTTCCTT
ATCCTCGTCTTTCAGATCATGTTATTAAAGAAATAGCTTAGTAGAGAAAT
CCAGGGAGAGGAGGAGGAGGCCCTGGAAAGCTGAAGGAAAGAGAGCCCTT
GGATTACCCTCGACAAGGATGGCAAATTACCTTTTTTATTTCTTTTTCAT
TTCAGATTTCACCGAACTCCTCATTTCGTATTTGCTCGCCAAACCAAACG
TTCAGCAATAATAACAACAACGACAATAACAATATAGTACGAAAGTCCAA
GAAACCACATTGGAACACAAGCACTCGCTTACATCACATGGACCCTCATT
TATCACAAGAAGTCACTATGGATGTTTTCTCATTAACACGCGAAATCCAC
ACGCCCATCGGCCCGCCCATGAACGCCTCTGAACGCGCCACAACGCCCAA
AGACGATAAACCAATGTTACCTTTGAAGAGAAGTGATATTTTACCGAATG
TAAAAATTTACAATTTGTGGAGTCAACACTTGTCTAAAGATCAGGTACTA
TTTAATGTGATTCCTGGCTAAATATAGAATTTCTACTTCAAAATTTGAAA
AATTACTACACAACTTCAACTAACTCTTTAATTTAAAGCTGCATTTTTGT
ATTTTTGGTTTATCACGTATTATAATTCGAATTCTAATAGAGTGTGGCTT
TTTCTATCCACTTTTTGATCCATCACTGCATCTCTATTGCTAAATCTATG
GTATTGGAAGATTAGGTATTGTAAACAAAACAAAATTGCCAATTAATTAA
ATTAAATATATCCTCAGTTCATCAATCTAATTATCGCGACAGAGCCGATA
TATTTTATTGCTTTTTTCCGTTTTGTGCTCATGTTTGTAAATTTCTTTCT
ATTCATTAAATGGAAAAAATTCTCATCTAGATTATCCGATTTTCTAACCA
GGTTCTTTTGATTGATTCCAAGGAACACAAATTTCATTGAAGCGTGAAAA
CTTTATGTTGAAATAATCAGCATTTTAGACCAGAAAACCAGGAGTTAGAA
CTAATCCGAAAATCACTTGCTAGTATTTTTGAGACAGGGGTGTTATACCA
TCAATATGGTTTTCTAACTAACGGCTCTTATCATCTGATAAATTTTAAGT
CAATCCCCAAGTCGATTTAGATAGTATTCCTGTTTAGCAACAGTAGTTAA
ATCAGATCTTAAATCCGAAAAATTCACTTCTTGGTGAAAGATTCTGCGAA
ATGTTTTCCCATTAAGGGCTCTTCATAGTGAATTTTAATATTTGTCATGT
ACAAAATATAAATTTCTGCCTGATGTAGCTAACAAAACTTTGACATGTTA
TACATTTTCTGTTAGACCAACTATCATTGAGTCTGAAAATTTAAGAATCG
CAAAGAAAAAATTTAATGAAGTAGAAAATTAAGACTTTTGCGACGAAGAG
TATTTCAACTTATTTTATTTTAGCTTATTTTTGGCGAGAAGAAATATTTT
GAAAAAACTTTTGTGGTAGATGGTGTATCTTTTGCCGAACTAAAAATATA
TTTTCGGAAAATTTTGAAGATAGATTTATGGTCATATTCTCTCGATTTAT
TATAGATAACAGCAGAAGCGGCTTGGAACAGGTGTCGCTTGATCACCGAA
GAAGCGTTGGAGAAGTTTGGTGAACGGTTAGACTTCTTGGAGAATGTGGC
TGCATGGGAAATCACAGCTGAAATCTTATTGGAATTCCAATCGCTGGAAG
AAAAGAAAGGTGAAATAGAGGTCAGTGGTTCTTCTCTTTTCATCTTTCTA
TTTTGGCGCATTATCAAATTTCTCTTATACATTTGATGTTGAATTCGGCT
AAACAGAATACGTCTTTTGTGTTGACTCTCTTATTAGAGAAGAAAATAGA
ATTGGACGTATTTAATTGCATTCTTGAAAACTGACAAACAGCTTTCAGGT
TTTCAAATATGTTTGAATTAAGCCGAAGCGGAATGAAAGCCCAGCAAAAG
TCTAATGTTTGTTCGCGATGCGTATACTTCGTACTGATTGTGACATGGTG
TTGTTTCTTCTGAAATGAACTTGAATTGACAAAGCGCTGATTCTTCAAGA
CGGACTTACAGCATTGCTGACAGCGACTTACCAATGAAAGGCCTGTCTAT
GCTGATTGGCCAAAAATACAACTCGCTCTCATTTTATGCTTAATTCTTCA
GGCTGGTTTGTTTGAAGTTGAAGATTACGATATTGAAATCAAAGAAGTTG
CCAAAGCAACACAGAACGTCGCGCAGTATCTCGCTCCCATTGAAGAGAGA
GAAGAACTCAAAATGAAGATCGTTACTCTAAGACGACGTTATTTCAAAGT
TTTACAAGAATTATGCAAGAAGAAGGAACTTTTCAGATGGTTGTTACCCT
TGTTAGAGCAGTACCGCGACCAAGGATGTGATATTAAGAGTTGGCTTGAT
GTCACGGAGTCACGAACTGAATTTCTCACATCAAATTTCAATAATAATGA
AATTATTGTCAAAAATGAAGATTTGATCGAGGTACTTTCCTATGATACAA
TTTATTACCACAATCTATTTTCAGATACTATGACGATATATAGCTTGCTT
AAATTAGTTCTCTCTCAAAAGTCTCTAAATCCTATCTATTTTCGGACCAA
TCGCGTGCGGTTGCGTCGCACGGAAGATGCTACGGATCCGAAGGTCTGGT
CCCCTAATATTTGATCTTTTTTTAAGAAATTTAAAATCTTTTACTCTCAG
GAAATCAAAGAAGAACTTTTCGTGCAAAAAGATGCTTACGAAGACTTCTT
AAATGCCAGTGAAGGAATCATGGATTTGTTATCAAGTGATGATGACGTCA
TCATTCAAATTCGGACAGACCATGACCACGTGGTCTCAAGATGGGACACT
TTGTGTAGCAACATTGAGAAGTGTTTGAACAGATTGGTATATGCAAAGAA
GGTGTTATCAGAACAATCGAGAACGATCAATACCGACCCTGAGAAGATCG
AGAAAAAGGTAACATATATCCAAATTCTTTTTCGAGATTGAGTGAACTTA
ATAATCAAGACGAGGCTGGACAGTTCTGCTTTCATGACGGTTGACTGGTG
AAAGTCTTGTAATGTCGATCGGCTTTTTAAAATAAATAAACCATAAGTGA
TGAGTCATACGTGGTAACAGAGAGGTGCTAAACCGTTTTCTCTACAAAAA
CCGTTTTCTCCGAAAAAAGAAATATTTCTCATGGACTTATCTCAATTTAA
TCCTGTCCCTTCTTAACCAATCCAAAAGGACTGTGAACTTTGTTTTTGAC
GATTGCATCATTGTTGCCATTCTAGATTCGTAACGAAGCAAAACAATGTA
CTTGTCATAAACCTTTTCAAATCACTCGTGTTGGTGAAGGGAAATATACA
TTTGGAACTTCCAAGATTGTGCGGTTAGTTCGTGTCCATNTCGACGAACT
CTTACTACGGTAAAAATGTAGGAAAGATGTTTATCACTAACCCCAACTCT
GTTCGTTTTATAACTTCTTGTAGGTTATGAAGTTCTTGATGTGTATTTAG
AGTTNGTGTTGGTGGTGGATGGGAATATTTGTACGACTTCCTGTTCAAAG
CTGATCCATGTCGTGGTAAGTCCAAACTCTTTCTCAAAAAATATTTTTGT
TCTGATTTCATAAGAGCATGAACATATAAACGACTGGACATCCATCTCCT
TTGTCTTTTTGTAGAAAGGGCTGCTAGCTTCATTGCCGCCTCGTTAAAAG
CATAAAATGAAACAATAGATTTTGATGATATACCACTTGGGAGTACCTTG
CTAACAACGTCAAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069581-exon-scaffold_502-1575043694:173200..173220 | TCONS_00069581-exon-scaffold_502-1575043694:173200..173220 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1575043694:169377..169715 | TCONS_00069581-exon-scaffold_502-1575043694:169377..169715 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1575043694:168151..168315 | TCONS_00069581-exon-scaffold_502-1575043694:168151..168315 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1575043694:167390..167719 | TCONS_00069581-exon-scaffold_502-1575043694:167390..167719 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1575043694:166913..167170 | TCONS_00069581-exon-scaffold_502-1575043694:166913..167170 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1575043694:166103..166595 | TCONS_00069581-exon-scaffold_502-1575043694:166103..166595 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:173200..173220 | TCONS_00069581-exon-scaffold_502-1510915933:173200..173220 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:169377..169715 | TCONS_00069581-exon-scaffold_502-1510915933:169377..169715 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:168151..168315 | TCONS_00069581-exon-scaffold_502-1510915933:168151..168315 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:167390..167719 | TCONS_00069581-exon-scaffold_502-1510915933:167390..167719 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:166913..167170 | TCONS_00069581-exon-scaffold_502-1510915933:166913..167170 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1510915933:166103..166595 | TCONS_00069581-exon-scaffold_502-1510915933:166103..166595 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:173200..173220 | TCONS_00069581-exon-scaffold_502-1491911889:173200..173220 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:169377..169715 | TCONS_00069581-exon-scaffold_502-1491911889:169377..169715 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:168151..168315 | TCONS_00069581-exon-scaffold_502-1491911889:168151..168315 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:167390..167719 | TCONS_00069581-exon-scaffold_502-1491911889:167390..167719 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:166913..167170 | TCONS_00069581-exon-scaffold_502-1491911889:166913..167170 | Clytia hemisphaerica | exon |
| TCONS_00069581-exon-scaffold_502-1491911889:166103..166595 | TCONS_00069581-exon-scaffold_502-1491911889:166103..166595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:166103..173220 - |
Blast
The following BLAST results are available for this feature:
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