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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069580 ID=TCONS_00069580|Name=TCONS_00069580|organism=Clytia hemisphaerica|type=transcript|length=2030bp
CTTGTGAAGGTAAACCAATGTATTTTTGACATCAAACGAATACATTTATA
TTATGTTTGATTATATAAAGGGCATCCTCGGCACTCAGGCAAAATGAGAT
ACAGGGACGTTTAACTGTTCAGACTCCCTTTTAAAAGTTAATATTCTAGT
TTGTCGATTCTACTTTTACCACGGCAACGGTGCGCTTGTTCTACATAAAA
TTTCGTCAAATCTCGTTTACCGAAGTAACCATGGCTTGGGTCTATGGCGC
GCGGAAGCGCCgataaatactatcttgtttaaaacgaaactatgttTCAT
TCAGGGGATACTATTTCCCTTAAAAGGAAACTAAGCTCATTTCAggagaa
actatctcatttaaaacgaaactatctcatttaaaacgaaactttctcat
ttaaaacgaaactatctcatttgaaacgaaactatctcatttaaaaagaa
actatgttTCATTCAGGGGATACTATTTcccttaaaaagaaactaagtTC
ATTTCAggagaaactatctcatttaaaacgaaactatctcatttgaaacg
aaactatctcatttaaaaagaaactatgttTCATTCAGGGGATACTATTT
cccttaaaaagaaactaagtTCATTTCAggagaaactatctcatttaaaa
agaaactatcatatTTATTTAACCAAAATATTTCAGTTCGTCGGAAACTT
ACGTCCTGAAAAGGCGAGTTACAGTAAACGAGTTATAAATACGGTTTTAT
AAAAAAGCCGAGTAAGGAAGAGTTCGGGCTTGTAAAAAAAGGCGTGCTTT
TCTCTGAAgtagccaaaaagtcaaaattttgataagtCATTCAGTCACGT
GGGTCACGTTTTACTGTCTGGTCCGTATTTTACAGGTGGGGCGGGGGTTc
ataggcaaaatgggtgctgggtatgtgctcGAGCCCCCGGAGGGgggggt
acggtatgtgccgccctcaagggtaccttttttggacttccaaagtctcg
ctaagggtcagaaaaatcagaaaatcaactttcagtcccactaagggtca
gaaaaaaagattttgactttttaccccctgaaagatcgaaatttgttcaa
aattggtctaatttgtcccgctaagggtcgtaaaattcccaaaattttcc
tttcttttatccttttcagtcccggtaagggtccaaagttcaaaagtcgg
gcggcaccctcccccgtcagctcgcaaccctagtaccccccgggccccct
cctattttgaaaaaaggttgTTTGTTGAAAAGGAGGAACAGACACTTTGA
GAAAATGGCCTCTTTGGCTAGTTCTTAAAAAAGCACGCTTTTTCCTCTAA
GCTCGAGTTACAACTCTTCATTACTCGGCTTTTTGATAAAACAGTATTCA
TAACTCGTTTACTGTAACTCGTCTTTTCTGGCCGTAAATTTCCGATTTAG
AgatgatagtttctttttaaacaagatagtatttattggcgCTTCCGCGC
GCCATAGGACTCTCTTATTAATGGAGATGTAATCATAAATTCTATCCGCA
AAATCTTGACAATTATCGTTCAACCAattatatcttttacccagttCGCG
TTTCTTGAACAAGTAATCGAAAAGGTTTTTTAAGCTCAGATCGCTCCATT
GATGCTTGTGTGTAGATGGCTTAGAGCGACCCAAAAGTAAAGGTCTTTTC
TGACCACGACAATAATCTTTAACACTATTGGGATTTTTACTACGTTGCAG
GTCTAGCCCTTTTACATTCTTTTCGAGAGACCAAAAGTGTTTATTGGTTT
CCAAAACAACATAAGAATGATAAAATAATGCATGAGTAAGTTGCCAGCCA
CTTAGTGGAGTTGTGTACAACCAGACTTCCTTTATATTCTCTTCAACATC
CACCAAGCTTGCCAACTTTGATTGAAGCTCATCGTGCGACAGATAAAATC
CTTTATTTTCCCCTTCATCAGCATCAGGGTTGAAATATAGACTGCTTCGC
CAATACATTCCTTTCTTTACCATTTTAACC Run BLAST on NCBI transcript from alignment at scaffold_502:156625..158654- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069580 ID=TCONS_00069580|Name=TCONS_00069580|organism=Clytia hemisphaerica|type=transcript|length=2030bp|location=Sequence derived from alignment at scaffold_502:156625..158654- (Clytia hemisphaerica)
CTTGTGAAGGTAAACCAATGTATTTTTGACATCAAACGAATACATTTATA
TTATGTTTGATTATATAAAGGGCATCCTCGGCACTCAGGCAAAATGAGAT
ACAGGGACGTTTAACTGTTCAGACTCCCTTTTAAAAGTTAATATTCTAGT
TTGTCGATTCTACTTTTACCACGGCAACGGTGCGCTTGTTCTACATAAAA
TTTCGTCAAATCTCGTTTACCGAAGTAACCATGGCTTGGGTCTATGGCGC
GCGGAAGCGCCGATAAATACTATCTTGTTTAAAACGAAACTATGTTTCAT
TCAGGGGATACTATTTCCCTTAAAAGGAAACTAAGCTCATTTCAGGAGAA
ACTATCTCATTTAAAACGAAACTATCTCATTTAAAACGAAACTTTCTCAT
TTAAAACGAAACTATCTCATTTGAAACGAAACTATCTCATTTAAAAAGAA
ACTATGTTTCATTCAGGGGATACTATTTCCCTTAAAAAGAAACTAAGTTC
ATTTCAGGAGAAACTATCTCATTTAAAACGAAACTATCTCATTTGAAACG
AAACTATCTCATTTAAAAAGAAACTATGTTTCATTCAGGGGATACTATTT
CCCTTAAAAAGAAACTAAGTTCATTTCAGGAGAAACTATCTCATTTAAAA
AGAAACTATCATATTTATTTAACCAAAATATTTCAGTTCGTCGGAAACTT
ACGTCCTGAAAAGGCGAGTTACAGTAAACGAGTTATAAATACGGTTTTAT
AAAAAAGCCGAGTAAGGAAGAGTTCGGGCTTGTAAAAAAAGGCGTGCTTT
TCTCTGAAGTAGCCAAAAAGTCAAAATTTTGATAAGTCATTCAGTCACGT
GGGTCACGTTTTACTGTCTGGTCCGTATTTTACAGGTGGGGCGGGGGTTC
ATAGGCAAAATGGGTGCTGGGTATGTGCTCGAGCCCCCGGAGGGGGGGGT
ACGGTATGTGCCGCCCTCAAGGGTACCTTTTTTGGACTTCCAAAGTCTCG
CTAAGGGTCAGAAAAATCAGAAAATCAACTTTCAGTCCCACTAAGGGTCA
GAAAAAAAGATTTTGACTTTTTACCCCCTGAAAGATCGAAATTTGTTCAA
AATTGGTCTAATTTGTCCCGCTAAGGGTCGTAAAATTCCCAAAATTTTCC
TTTCTTTTATCCTTTTCAGTCCCGGTAAGGGTCCAAAGTTCAAAAGTCGG
GCGGCACCCTCCCCCGTCAGCTCGCAACCCTAGTACCCCCCGGGCCCCCT
CCTATTTTGAAAAAAGGTTGTTTGTTGAAAAGGAGGAACAGACACTTTGA
GAAAATGGCCTCTTTGGCTAGTTCTTAAAAAAGCACGCTTTTTCCTCTAA
GCTCGAGTTACAACTCTTCATTACTCGGCTTTTTGATAAAACAGTATTCA
TAACTCGTTTACTGTAACTCGTCTTTTCTGGCCGTAAATTTCCGATTTAG
AGATGATAGTTTCTTTTTAAACAAGATAGTATTTATTGGCGCTTCCGCGC
GCCATAGGACTCTCTTATTAATGGAGATGTAATCATAAATTCTATCCGCA
AAATCTTGACAATTATCGTTCAACCAATTATATCTTTTACCCAGTTCGCG
TTTCTTGAACAAGTAATCGAAAAGGTTTTTTAAGCTCAGATCGCTCCATT
GATGCTTGTGTGTAGATGGCTTAGAGCGACCCAAAAGTAAAGGTCTTTTC
TGACCACGACAATAATCTTTAACACTATTGGGATTTTTACTACGTTGCAG
GTCTAGCCCTTTTACATTCTTTTCGAGAGACCAAAAGTGTTTATTGGTTT
CCAAAACAACATAAGAATGATAAAATAATGCATGAGTAAGTTGCCAGCCA
CTTAGTGGAGTTGTGTACAACCAGACTTCCTTTATATTCTCTTCAACATC
CACCAAGCTTGCCAACTTTGATTGAAGCTCATCGTGCGACAGATAAAATC
CTTTATTTTCCCCTTCATCAGCATCAGGGTTGAAATATAGACTGCTTCGC
CAATACATTCCTTTCTTTACCATTTTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069580-exon-scaffold_502-1575043694:156625..158654 | TCONS_00069580-exon-scaffold_502-1575043694:156625..158654 | Clytia hemisphaerica | exon |
| TCONS_00069580-exon-scaffold_502-1510915933:156625..158654 | TCONS_00069580-exon-scaffold_502-1510915933:156625..158654 | Clytia hemisphaerica | exon |
| TCONS_00069580-exon-scaffold_502-1491911889:156625..158654 | TCONS_00069580-exon-scaffold_502-1491911889:156625..158654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:156625..158654 - |
Blast
The following BLAST results are available for this feature:
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