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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069578 ID=TCONS_00069578|Name=TCONS_00069578|organism=Clytia hemisphaerica|type=transcript|length=2291bpRun BLAST on NCBI protein sequence of TCONS_00069578-protein >TCONS_00069578-protein ID=TCONS_00069578-protein|Name=TCONS_00069578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MCVSKXKKPQSCEELECEHVCQQTNSGPFCSCKQGYQLNKDNKTCEDINERun BLAST on NCBI transcript from alignment at scaffold_502:140339..163062- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069578 ID=TCONS_00069578|Name=TCONS_00069578|organism=Clytia hemisphaerica|type=transcript|length=22724bp|location=Sequence derived from alignment at scaffold_502:140339..163062- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_502:140339..163062- >TCONS_00069578 ID=TCONS_00069578|Name=TCONS_00069578|organism=Clytia hemisphaerica|type=CDS|length=11556bp|location=Sequence derived from alignment at scaffold_502:140339..163062- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069578 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4) HSP 1 Score: 183.726 bits (465), Expect = 5.345e-52 Identity = 117/290 (40.34%), Postives = 159/290 (54.83%), Query Frame = 3
Query: 933 CEHVCQQTNSGPFCSCKQGYQLNKDNKTCEDINECLTQSNKCVKGFECHNLPGSYTCRRVYEKINCPDGYEQVND-FCRDVDECKNGQAKCQNGTFCENVLGGYQCTVKDNKHKCQAGSYK-YRGRCIDKNECK--SRPCRAYERCVNTVGSYKCV--AAACPVGYRF--DGSSCTDINECKEVKNICSGSGERCVNTLGAYQCFCKSGFKQNQISKTCEDINECTN-RARLCAHKCYNLIGGYQCACHKGFKLHSNKRSCLDIDECREKKNVCGSNDRCINVRGDFICF 1775
C+ C+ T CSC GYQL D +CED+NEC+T S+ C G C N GS+ C+R +C GYE D C+D+DEC++G C C+N LG ++C K +C++G + G CID NEC S PC C+NT GSY C C GY +G+ C D++EC C G G RCVN+ G+++C CK+G+ + IS+ C D+NEC RLC HKC N +G Y C+C GF+L + RSC DI+EC + C NV G + C+
Sbjct: 186 CKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQR---DSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCR---PKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPC-GKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSSP----CSQECANVYGSYQCY 464 HSP 2 Score: 40.817 bits (94), Expect = 5.345e-52 Identity = 28/97 (28.87%), Postives = 42/97 (43.30%), Query Frame = 2
Query: 563 CHSIRTLCCLNSQREESCKQGVEAVMVSGRSCNKLTGVAFLGSSF--KCCECCKLGRQHALDHPDKEDGEGCKTSEFNDKQCNAVFESCCKKTKEAA 847
C ++ CC + E C G+ R A L ++F +CC CC LGR + G+ C+ S QC VF++CC K++E
Sbjct: 61 CRMVQEQCCHSQLEELHCATGISLANEQDRCATPHGDNASLEATFVKRCCHCCLLGRAA------QAQGQSCEYSLMVGYQCGQVFQACCVKSQETG 151 HSP 3 Score: 174.096 bits (440), Expect = 1.121e-45 Identity = 134/444 (30.18%), Postives = 205/444 (46.17%), Query Frame = 3
Query: 936 EHVCQQTNSG----PFCSCKQGYQLNKDNKTCEDINECLTQSNKCVKGFECHNLPGSYTCRRVYEKINCPDGYE--QVNDFCRDVDECKNGQAKCQNGTFCENVLGGYQCTVKDNKHKCQAGSY--KYRGRCIDKNECKSRPCRA-YERCVNTVGSYKCVAAACPVGYRF--DGSSCTDINECKEVKNICSGSGERCVNTLGAYQCFCKSGFKQNQISK-TCEDINECT--NRARLCAHKCYNLIGGYQCAC-HKGFKLHSNKRSCLDIDECREKKNVCGSNDRCINVRGDFICFANTCPIHYRKQGRST---------CKKAC-PTGQNCGNLPLYXXXXXXXXXXX-------XXXXXPLTVSTRRYGAVTDVYFEFTQGNEENEYKLKRFAANTVLIHATKGNFATVEPFKTELKIQA--TISRLNSRPVKILYHLYLNFY 2165
+ +CQ T P CK G+ + C DINECL+ S C G C N GSYTC++ NC GY + C DVDEC C G C N G ++C +C+ G Y C+D NEC+ P R +C NT+GSY C +C VG+R DG SC DINEC S + C N G+YQC+C+ G++ + + TCEDI+EC +C+++C N+ G +QC+C G++L N R+C DIDEC + C N+ C N++G F C A CP +YR+ + C K+C P C P++ T ++ + ++ F+ T+GN + + + + + + + + V PF LK++ + + S + H++++ Y
Sbjct: 276 DFICQNTLGSFRCRPKLQCKSGF-IQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQK--NVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRC-------ECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLC---SCSVGFRLSVDGRSCEDINECSS-----SPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYRRSAATLQQEKTDTVRCIKSCRPNDVTCVFDPVHTISHTVISLPTFREFTRPEEIIFLRAITPPHPASQANIIFDITEGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEY 701 The following BLAST results are available for this feature:
BLAST of TCONS_00069578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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