TCONS_00069577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069577
Unique NameTCONS_00069577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069577 ID=TCONS_00069577|Name=TCONS_00069577|organism=Clytia hemisphaerica|type=transcript|length=979bp
TAAGAATGAGTGCAAGTCACGACCCTGTAGAGCATACGAGCGTTGTGTTA
ATACCGTCGGAAGCTACAAGTGTGTTGCAGCTGCCTGCCCTGTAGGGTAC
AGGTTCGATGGCTCTTCTTGCACAGACATAAACGAATGCAAAGAAGTGAA
GAACATTTGCAGCGGTTCTGGTGAACGTTGTGTTAACACACTTGGTGCTT
ATCAATGTTTCTGCAAGTCTGGtttcaaacaaaatcaaatctcCAAAACA
TGTGAAGATATAAATGAATGTACGAATCGAGCTCGATTATGCGCTCACAA
ATGCTACAATCTGATTGGTGGATATCAATGCGCATGTCACAAAGGATTCA
AGCTCCACTCGAATAAAAGAAGTTGTTTAGACATAGACGAATGTAGAGAG
AAAAAGAATGTTTGTGGAAGCAACGATCGTTGTATCAATGTACGGGGTGA
TTTCATTTGTTTCGCCAACACATGTCCAATACATTATCGAAAACAAGGGC
GAAGCACTTGTAAAAAAGCGTGTCCAACTGGTCAGAACTGTGGAAACCTT
CCGTTATACATCCGAAAGTTCATTCGTTCACGAAGTAGAACAAGTACTTT
CCGAATCCCACTCACTGTCAGCACTAGACGCTATGGAGCAGTCACAGATG
TTTATTTTGAATTCACACAAGGGAACGAGGAGAACGAATACAAACTGAAA
CGTTTCGCAGCAAACACCGTGTTAATTCACGCTACAAAAGGAAATTTCGC
TACGGTCGAACCGTTCAAAACAGAGCTGAAAATTCAAGCAACAATATCAA
GATTAAACAGTAGACCTGTCAAAATTCTTTATCATTTATATCTCAATTTT
TACTAAAGTAACATCATCATCAACGTCCCTTCTTGCTTGATGGATAGGAT
ACATTAGTGTTAATGGCGTTTTGTGCAAATTGTTATAACCTACCTCGTTT
ATTTTATGAGATTTTCCAGTAAATAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_502:140339..149292-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069577 ID=TCONS_00069577|Name=TCONS_00069577|organism=Clytia hemisphaerica|type=transcript|length=8954bp|location=Sequence derived from alignment at scaffold_502:140339..149292- (Clytia hemisphaerica)
TAAGGTTTTATCTTTCTTCAACCTTTGTGAAGCTTCCAAAGAGAGGTGTT
TTTAAAAGGACTTAACTCTTACCAAAAAACGCATGATTCATTTACTGATT
CTTGATATGCGTAAGTCAAGATAAAGTCATATTTTTTAACGGAAGCACCC
AAAAAAGCCGGTTTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGA
GGTCAAATCCCGGCTTTTTTAGGGTGTTTCCGCTAGAAAAATGACTTACG
CATATCAAGAATTCTTCCTCGTGTAACGAAAAATGCAGTAGAATTGACGT
CCTTAGCGATGCACCAAAATTTCGTACAACCAAAATTTTAATATCTTTTT
CAGATAAGAATGAGTGCAAGTCACGACCCTGTAGAGCATACGAGCGTTGT
GTTAATACCGTCGGAAGCTACAAGTGTGTTGCAGCTGCCTGCCCTGTAGG
GTACAGGTTCGATGGCTCTTCTTGCACAGGTTATATATATTATTGTAACA
CCTTGTGACCGACTTTGAAGGACCCTCCCTCCAGGAATAATCGGCCAAAA
TAATCTTCCGGCACAGTTGGAAGAAAATTTTGAAACTTCGTCTCTATCGG
AAAACTAAACTGCTCGCTGGACTGAGTATTTCGCTAGAAAAATTATCGAT
TTCCTAGGCTATGGAAATGGTACTTTCCAGCTCTGGAAAATGTTTTTTTC
CAATCATTAATAGTTAATTTCGAAAAATTTTTTCATTTTCTCAAATGAGT
AACTATAAAGTATCATATCACGCTTCCAACTTCGAAGCACTCTACTGATG
AATCAAAACATCACACCAAGAAAATAACTACAAAGTTTTAGTCTTCCTCA
ATAAAAAATTTAGCGATTGTTATCACTAACAAATTGATAACAAACTTCCA
GAAAAGAAAAATCGTTTTTCATAGCATCCCTACTTTCCCGAACTTAGAAA
TCCAAACTTGACGGGTCGAATGATAAATCTAATTCCGAAAATCATCAATA
CAATGTGAATTATCCCCATTAATAACTGAATTTTGAAATCTTCACCCGTT
GAGGCAGAGGTGTTCTATGGGCTTCTTTAGCTTTAAAAAGTTGTAGATAT
GATCGACAAAGATATTTCTAACCACTAGATGTTTACAAATGTGGTAAATT
TGCAAAAAGAGCCATTTTACTTAGACCTCTATTAACTACAATGAAGTCTC
CATAATCCGAACACGGGGAGCACAAATTGGTTCGAGTTATTCCTATTGAT
TTTACTCCTCTGTAATTTCAATATGGTACATGATTTATTTGTCCTATCAC
GTTAATTTCATTCTTTCTCCAGACATAAACGAATGCAAAGAAGTGAAGAA
CATTTGCAGCGGTTCTGGTGAACGTTGTGTTAACACACTTGGTGCTTATC
AATGTTTCTGCAAGTCTGGTTTCAAACAAAATCAAATCTCCAAAACATGT
GAAGGTTTGTTTGTTACTTTCATCATAGACAGAAGAAAGATTCTCCTCTC
AATGGTTTCATAACAAATTTCCTTGCTTTTGTAAAATTGCCTCAAATTTA
CCCCTCCTTTTGAAGATGATATACCACGTCTGGTGCTCCAAAAATCTGTT
ACGAAAGAGGTAAATTATGAAAGTTCTGACCTTGCTGTTCAAATTAATGA
GGTTTCTTTGAATCAAGTATTGTTTTAGTGTTTGGTAATTATACTTTTTT
CGAAAGGACTCCCTTTTGAGAGAAACTTCGGTCTCAANACGTCGGCTAAG
GGGGGAGTAGGTAAGGGAAATTAAAGCAGTGAATGATAGAATGATGCACA
ATGGTAAAACCATAGTATAAGAAAGCCGCGGCTGGAATGATAACATCTGA
ATTTCTGTTGTTCTATCTCTGTCGTATTTGATGACTATTTGTGATCAAGA
AATAAGTAATGTAGCATCTTTAATGGTAAATTTTATTGGTTTGTCGTTAA
TACTTATTTCTCACTGCGTTTTAGACATTAATGATATGCCCATGATAATA
CACTTACAATATGAAATCATTGTGCAGGAAAGATCAACAATAAGAAATTT
AAACAAGCACAAAATGGCTGGACTGAAAGAACTCAAAAATTAATAAAGTG
CCTCGAAATGCCTTCACAATATTTCAGTGAAATCTTTTTAGAAAGCAATG
AAATAGAACATCAAGATAATTCTGTGAAAATTTCAAGCCAGCACCTTGAA
AATTTACCATTCAAACTGACAGGAAAGTTGTCATCTTGAACATATTTCTT
ATAATTTTAATTTTGGCGAAAAACTATCGTTTCCACAAAATACCCCTAAA
ATATGTCTAAAATCAGTTCAAGTTTTCTATTGGGTACAGATTCAAAAGTA
TCTAGCAATAAAAAAAATTTTTGTGAATGAAAATAAGAAAATATTTCAAA
CACTATCTACCAATAATAAACTGACAATCTTGATGTTCTTATAAAGCTCG
GAGACAGAGATAGAACAGCAATTAACTGAAAAGACAATGCAGTACATATT
CCAGCCGCGGCTTTCTTATACTATGGTCTCAATACAGATATACAATAGTG
TTAGACAGGCGTAATGTTATTTTCGGTAAAAATGATAATCGATCCATTTG
TACACCCCTTTCTCACAGACCCACTGGGAACCCTTCCCAATGGAAAAATT
GGCCGAAATATCGTCCCCAGTGGAAAATTATCCTCCAATTTTTATCCCCA
CTGCCTGAAAAAATCCTACCGGGTCTGTGAGAAGGGGGTGTATTTGTAGA
CACTTCGAAATTTCCTTTCAGATATAAATGAATGTACGAATCGAGCTCGA
TTATGCGCTCACAAATGCTACAATCTGATTGGTGGATATCAATGCGCATG
TCACAAAGGATTCAAGCTCCACTCGAATAAAAGAAGTTGTTTAGGTAAAC
TCTTTTTTATAAGAACCGCAGTATTTTTTTCAGAACTTGATTCTTCTTAT
TTCTTTGGCACTTTGACTGTTTGAGCCTCAAACTGTTCTCATTTTACTTT
ACTTTTAGGAAAATATTGATGCATTTTACACTTGTTTAATACCTTTAGGG
AAGAAATTTTGGCGGATTTATTTCCCCAAATATGCGCTATTTTAGGCATT
TACTCCTTGACGTCCCATCAGCGAAATTTGGTTCTCTCCGGAACGATATT
TTCGTCTACCGGTAGTTTTCATTGAAGACCTAATTCAAAAAATGAAAAGA
TAGAGCTTTGAAATAGCTTTCCAACGGTACCAAACATTAAGGGTTTAGCT
ATCACCAAAGCCGAAATATTCCGATTCTGATCAAAGTTTAAGCATTGAAA
AATCTTAATGCGATTTTTTAGCTTTTTGAGAACNGATCAAAGTTTAAGCA
TTGAAAAATCTTAAAAATACGATTCTTTAGCTTTTTGAGAACATCAAGGG
GTTAAAACTTTTTTTTCTTATTTTAATAGGTTTTTTTTTGGCTATACATA
AACTTAATCCACCAAATTAGATTCCCGCTAAATCTAATTTTTTAAGCCAT
CCACCAAATTAATTTTCCGCAAATTGAATTCCCTTACCAATGGTAAAGTA
CTACTTTGCTCCTTAAATTGCTTTAATTTAAACTCATTGTTCTTGTGAAA
AGAGATGTGTAGGTGAATAGAACAAAGTTTAAGGATTTCAAAGGTACCGA
TACCTAAATTTTTCTGAATGTCAAATAACAGAATTTCTAGAATGGGGAAA
TTTGTGCTAATTTTTTGTAAAGAAAAGAGTAGCAAAAATTTTCGTTTTTG
AGTTAATGAAGAATATAAAGTCGCGATAAATCCACCAAAAACAAAATACC
TTAAGGGAAAGAAATTTTGGTGGGAATTTAATTGGCGGATGGCTGAAAAA
GTTTTTTCATAGGGAATTTAATTTGGCAGATTGGGCTCTTCCAGAAAAAA
TCCGTTCATGGGGGGTAGAGGATATATTATTTTTTTCATGAATTACCCCT
GGACATTTTGATTTTTAAGGAAAAAGCTAATTTTGATGAGAATTCAATTT
GGCGGATGACGGATTTTTGAATCCGAAATCAGGGTGAAAACATTGATATG
GGGGGTAAATTGTGAAAAATCGGACATAAAAAAAGAAAAAAAAATTAAAT
TTGATGGGAATTAAATTTGGCGGATGGCCGAAAAAAATTTAATTTGGCGG
ATTTCAGACAAATCCGCCAAATTTTCTTCCTTTAAGCATGAAGGTAATAA
AGATATAGATGGAGAGAAAGCGTATCTCGGTAATGACCTAAATGATCGTT
AAAATCTTTTATAAATCTATTCAAAGCGGCTTTTCTTTGATGTACCATCA
TTGGAAGCAAAAAAATCCGAAATGTAAATTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAAGTGAGAATGTTA
TCCTGATTGAAATAAACATTTTATGCAAAAAGTTCTTGTTCAAACGCGAT
ACAAAATAATTTTCTCAAAGTAAGGTTACAATGATTTCATATCCAATCCA
TGTATTTTTGGGCGAACACTGTCCAAATTTTGGGAGTTTCAGCACATTTT
CCTTGAAAATCTCTTCATAATAAATCTTTACGTCTGGAAGGGAGGGGGTT
TTCAAATTCTGATGGATGATTAATTAAAAGGTTACCTAATCGTAATATAG
AATTCTTTTTTAAATTTATCGATGATTTTATGAGAGGGGACCCTTAGAAA
TATAGCATTTTGTGCTTGTTACGGCAAACTTTTTCTTATTTTGATCAACA
AAGCTACTATCTCACAATAGAGTTGTTAAAAATCCAAAATCTTTTTATTC
AGTTTTTTATGAACTTAAATATTCCCATGAGTGCACACAAAATTGATCAC
TTTTTCCCATTGCAATCAAGGAGCCGTTTGCTTCCGATGATTAGGTACAA
TGAAATAGTTCATTCTCCATCTATTTCTTATTACCTCCATGCTTTAAGGT
AGTTTAAACCAATGTGCGGGCTATTCATTGATATTTTCAGACATAGACGA
ATGTAGAGAGAAAAAGAATGTTTGTGGAAGCAACGATCGTTGTATCAATG
TACGGGGTGATTTCATTTGTTTCGCCAACACATGTCCAATACATTATCGA
AAACAAGGGCGAAGGTTCGTAAAATCTTTCATAGGAAATTTATCATCCCT
TGTTTTTTTTTTAATCTATTTCTGAACTTGAAAAAATGAAAACCACATCC
AACAAGGACATTCCCTTGGACATTTAGCACACTCATCTACCTTCATTACT
TTCCATACTGACTAAAAAGGTTCTTACCAGATCACTGATGAGACTGATGT
AAAAAACAATTAATTATTTGACAAATTACCCCTTCTTACATTCCAGCACT
TGTAAAAAAGCGTGTCCAACTGGTCAGAACTGTGGAAACCTTCCGTTATA
CATCCGAAAGTTCATTCGTTCACGAAGTAGAACAAGTACTTTCCGAATCC
CACTCACTGTCAGCACTAGACGCTATGGAGCAGTCACAGATGTTTATTTT
GAATTCACACAAGGTAACAGTTTTAAAAAGTTTGTTTTCGAAAAGTTCAT
CTTCTGATTAAAATTGTCAAGGATTAAAAACTTTAGAATTGTCAATTTCT
TAGTTGTACATTTTGAAAGTCTTGAAAATAATCTCTCTGACCAAAGAATT
TTCATTTATCAAACATCGACTTCTATATGAAAACAAACGAAACGAAATTA
ATTTTCATTTATGGTAATAAGATTGTTTGTTAAATATATATAAATCCTAT
CAAATATCATATAATATATAATATAAAAGTCTCTAAATCTCTAAAAACAC
TACGATTCCACTGTCAACATAAAATTGATGGTAGAAAATAAAATTCTAAT
TTAATTCAATAAGAATTTGATTTTCCTTCAATGGAACTGCTAGAATAATT
TTGTCAGAAATTGGACAAACACAAAACAAAAATACAAGAGATTACGATGT
CAATTGACTAAAAAACGTGCTTCTAAAAAAACTAGTACAAATAACGAGAA
AATGATAGATCATTGGTCATAATGTTTGTAATAAGGTGTTCATATCAATG
TTTGTAATATCCGAAGAACCATTTCACTGTATTCATAAAGAAATCACCTT
GAACTTTCACATTTTTCAAAGGATGCGATCCTTCAGGATAAGAAATCAGT
TTTACAGTTTTACCATTCCCCTTGAGTACTCTGTAGAAAGCTTTTCCTTG
AGATGGGGGCACTCTTGCATCTTTTTCACCAACGAAAATTAAAATAGGGT
TTTTAATTTTCCCAACATTTACGATAGGGGATTTACCTAACATCGTGGAA
AAATCAGCCTCGGTTGGGATTTTTCCTTGGTTGTATTCAAGCCCACTTTC
GAAGTAACTCCAATCAGGTATATCTGATAGTAAAGACATTGATGAAATTT
CGATAACAGGATTCCTTATCGCAGCTGCTCGATAGAAATCAGGATATTGA
CCCATCAAATGTGCTCCTAGAAAGCCACCATGAGATCCTCCAAAATAAAA
TACATTATTTTCATCAAGTCTGCCTTTGAATTTGGCAATGCATGCTGTCA
CCATCGCTTGAACCTCGATGACATCTCTTGAGCCGATTTTACCAGGTAGC
TCAAGCAATGACTTTTTGGAAAAGCTTGTGGAGCCAGTATAATTCACAAG
CAATACAGCAAATCCAAGCTGACAAAAAGCAGTAACAAGGGGATCATAAT
CAATTGTAAAAACGGTATGTGGCCCTCCATGAGCCCAAACAATCAAAGGC
ATTTTCTCAGCAGAGCTATTTCGAGGATACACAACCCATGAACAAATATT
GGGAATGTCTCTAAGAAGGATCTTTGAATAATCTGTTTTCATAGTGAACT
CGAGAGGTTTTACTTGGTGCCTGACAAATGTTCCCTCTGAAGCCTTATGT
TCATAAAGCACAAGTACCATTTCATTCATACCAAGGATTGACGAACACCA
AATTGCAAATGAGTTGACAACACCAAATAATCTAAAGCATTGGTTATCAG
ATTTCATCACGTTTCCTGACACAGTATTCACTACCACAATGTGACTCAAA
CCATCACGTTTAATTTGAAAAGCAATATGCAAGTTGTCATCAAACCATAT
TTGTGATGGGAAGTTTGTTATGAACATTGGCTCTAATTCTACTTTGGATA
GTTTTTTGGAAGAAAAATCACAAGTGTAGATAACTGAATCAGTACCATGT
GGATTTCCTTCTTCAGCAAGGGGACAATGCATGAAAACAAATTTTTCAAA
AGAATTGTTAACTCTTGGACACCAATTGTTGCTTTTACCTTGAACGATAT
TCTTAGTTATATTTTGAGCAGATTGCACTTTGAATTCACTGTCATACTCA
AGGACAAAAATATTACTTTCACGGTTTTCACAGTAAAATTTTCCAAGTCG
AAAAGGCTCCTTTTTGTACCCACAAACAACAATTGAGTTATTAGGACCCC
ATTGTGGTTGTGCAAGAGAGTAGCTTTCAAGGTCTTCATGCTCTAAAGTG
TAAAGTGTCTCAGAAGGAACATCAAAAATGCATATTGTTGGTGTTATTAT
GTCATAGAGCATCTCTCCCCAGCTTTCTTCATAATCATATTGGTTGCCAA
TATTTGTTTCCAAACTTGCTTCCCCTTGTTCAAAAAATCCACGAGATCGA
GGCTTTTTCTTTTCAGCAACATAGAGAAGTTTCTCTTCTTTTTGATCCCA
AGTGAATGAAGAAAAGAATAAATCAGCATGTACAATTCCATGTTTAGCAT
GTGCAGATAAATCCACAGTTTTGATCAATCTCGACATGGACCATACCTCA
AGAAAGTAGCATTGCGTGTTTTGCTTTGTGGATTTCTTAATGACTGCCCT
TTTCTCTTTCGATTTACTGACTGTCTCTAGAAGGATTTCATTACTTAAAT
CGGATGGAAATCCAATAGATTCGAATTCAGACTTTTCAGTGTCGAGCTTG
TAAGACGTTGAGAAGTTCTTCTTTTGCAAAGCAGCATGATCATTCTGTTG
CCAAATCAAACGAAAGGTTGCCTTCCCTTCTTCACTTTGATCTACAAAAA
CTGAATCAATCATAGGAATAGATGCATCTTGGAACACCTTTGCAGCATTT
TCAAGAGACAACTCCATTGTAATGATCTTTTTCTATTGATACTATTGATA
AACAGCCACTTTTGACTTTTTGGTCTTGTCGTCTTGTCACACGTGTAGAA
AAAGCTCAAATGAATTTTACTGCGGTGGTTTTTACTTTCACTTTCGATTT
TAAAGTTAACGCCCTATCTAGATGGAATTTAGGCTTTTTTAACAGCCGGT
TTACACTGAGAAAAGGAAAAATCGGGACATAACCGGGTAAAATTGTGGAG
AACAAAAAGAACAAGTGCAAATGCCGCACATGCGCACACCCCCCCCCGGA
CCGGGTGAGTTTGTCAAGGAGACTGAGTATTGATGCCATTAATGAGATAC
TCGAAATGACATTCCTATTCCCACTTCTTGTCTTTCTGCTGTTCAATCTA
CTATTGTCGTCATCGATTTTTGAAGGTTTGTCTTATTTTATTTCAGGGAA
CGAGGAGAACGAATACAAACTGAAACGTTTCGCAGCAAACACCGTGTTAA
TTCACGCTACAAAAGGAAATTTCGCTACGGTCGAACCGTTCAAAACAGAG
CTGAAAATTCAAGCAACAATATCAAGATTAAACAGTAGACCTGTCAAAAT
TCTTTATCATTTATATCTCAATTTTTACTAAAGTAACATCATCATCAACG
TCCCTTCTTGCTTGATGGATAGGATACATTAGTGTTAATGGCGTTTTGTG
CAAATTGTTATAACCTACCTCGTTTATTTTATGAGATTTTCCAGTAAATA
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043341XLOC_043341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069577-exon-scaffold_502-1575043694:149289..149292TCONS_00069577-exon-scaffold_502-1575043694:149289..149292Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:148814..148934TCONS_00069577-exon-scaffold_502-1575043694:148814..148934Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:147839..147970TCONS_00069577-exon-scaffold_502-1575043694:147839..147970Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:146399..146521TCONS_00069577-exon-scaffold_502-1575043694:146399..146521Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:144079..144202TCONS_00069577-exon-scaffold_502-1575043694:144079..144202Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:143680..143846TCONS_00069577-exon-scaffold_502-1575043694:143680..143846Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1575043694:140339..140646TCONS_00069577-exon-scaffold_502-1575043694:140339..140646Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:149289..149292TCONS_00069577-exon-scaffold_502-1510915933:149289..149292Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:148814..148934TCONS_00069577-exon-scaffold_502-1510915933:148814..148934Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:147839..147970TCONS_00069577-exon-scaffold_502-1510915933:147839..147970Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:146399..146521TCONS_00069577-exon-scaffold_502-1510915933:146399..146521Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:144079..144202TCONS_00069577-exon-scaffold_502-1510915933:144079..144202Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:143680..143846TCONS_00069577-exon-scaffold_502-1510915933:143680..143846Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1510915933:140339..140646TCONS_00069577-exon-scaffold_502-1510915933:140339..140646Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:149289..149292TCONS_00069577-exon-scaffold_502-1491911889:149289..149292Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:148814..148934TCONS_00069577-exon-scaffold_502-1491911889:148814..148934Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:147839..147970TCONS_00069577-exon-scaffold_502-1491911889:147839..147970Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:146399..146521TCONS_00069577-exon-scaffold_502-1491911889:146399..146521Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:144079..144202TCONS_00069577-exon-scaffold_502-1491911889:144079..144202Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:143680..143846TCONS_00069577-exon-scaffold_502-1491911889:143680..143846Clytia hemisphaericaexon
TCONS_00069577-exon-scaffold_502-1491911889:140339..140646TCONS_00069577-exon-scaffold_502-1491911889:140339..140646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:140339..149292 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.45176	5.2366	4.81676	4.59887	0.497078	0.236966	0.526453	0.572919	0.289011	0.502265	0.980283	0.521657	0.517256	0.227661	0	0.123906	0.993729	2.40803	0.244894	0.567139	9.59735	10.524	8.40056	6.17911	4.45535	1.91533	0.827522	0.621053	1.47152	1.70766
Blast
[Close]
BLAST of TCONS_00069577 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 1.603e-32
Identity = 89/309 (28.80%), Postives = 147/309 (47.57%), Query Frame = 2 
Query:    5 NECKSRPCRA-YERCVNTVGSYKCVAAACPVGYRF--DGSSCTDINECKEVKNICSGSGERCVNTLGAYQCFCKSGFKQNQISK-TCEDINECT--NRARLCAHKCYNLIGGYQCAC-HKGFKLHSNKRSCLDIDECREKKNVCGSNDRCINVRGDFICFANTCPIHYRKQGRST---------CKKAC-PTGQNCGNLPLYXXXXXXXXXXX-------XXXXXPLTVSTRRYGAVTDVYFEFTQGNEENEYKLKRFAANTVLIHATKGNFATVEPFKTELKIQA--TISRLNSRPVKILYHLYLNFY 853
            NEC+  P R    +C NT+GSY C   +C VG+R   DG SC DINEC       S   + C N  G+YQC+C+ G++ + +   TCEDI+EC       +C+++C N+ G +QC+C   G++L  N R+C DIDEC    + C  N+ C N++G F C A  CP +YR+   +          C K+C P    C   P++          T               ++     +  ++ F+ T+GN  + + + +   + + +   +     V PF   LK++    +  + S    +  H++++ Y
Sbjct:  401 NECQRYPGRLCGHKCENTLGSYLC---SCSVGFRLSVDGRSCEDINECSS-----SPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYRRSAATLQQEKTDTVRCIKSCRPNDVTCVFDPVHTISHTVISLPTFREFTRPEEIIFLRAITPPHPASQANIIFDITEGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEY 701

HSP 2 Score: 108.997 bits (271), Expect = 5.840e-26
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 2 
Query:    5 NECKS--RPCRAYERCVNTVGSYKCV--AAACPVGYRF--DGSSCTDINECKEVKNICSGSGERCVNTLGAYQCFCKSGFKQNQISKTCEDINECTN-RARLCAHKCYNLIGGYQCACHKGFKLHSNKRSCLDIDECREKKNVCGSNDRCINVRGDFICF 463
            NEC S   PC     C+NT GSY C      C  GY    +G+ C D++EC      C G G RCVN+ G+++C CK+G+  + IS+ C D+NEC     RLC HKC N +G Y C+C  GF+L  + RSC DI+EC         +  C NV G + C+
Sbjct:  310 NECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPC-GKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSSP----CSQECANVYGSYQCY 464

HSP 3 Score: 91.6633 bits (226), Expect = 3.210e-20
Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 2 
Query:    5 NEC--KSRPCRAYERCVNTVGSYKCV-AAACPVGYRF-DGSSCTDINECKEVKNICSGSGERCVNTLGAYQCF----CKSGFKQNQISKTCEDINECTNRARLC--AHKCYNLIGGYQCA-----CHKGFKLHSNKRSCLDIDECREKKNVCGSNDRCINVRGDFIC 460
            NEC   S  CR  E C+NTVGS++C   ++C  GY   + +SC DI+EC+   + C      C NTLG+++C     CKSGF Q+ +   C DINEC + +  C   H C N  G Y C      C +G+ L+     C+D+DEC      CG   RC+N  G F C
Sbjct:  218 NECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCL-PDFICQNTLGSFRCRPKLQCKSGFIQDALGN-CIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRC 382
The following BLAST results are available for this feature:
BLAST of TCONS_00069577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBLN11.603e-3228.80Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4[more]
back to top