TCONS_00069533 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069533
Unique Name	TCONS_00069533
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1219

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_502:110384..118235+

transcript sequence

>TCONS_00069533 ID=TCONS_00069533|Name=TCONS_00069533|organism=Clytia hemisphaerica|type=transcript|length=1219bp
TAAAAATCAAGGACCGTCATCAGATACTCCCAGCACGGTCGTTGTTTTCG
ATTTCGATTGGAGCGTGAAGCTGGAGATCAACTACGAggaaaaatacaca
aacagcCGTAAACTTTTTAGtcacccattttgatttttgatgattttgga
tTTATTCCTGAAAATTTAATTGTCTCAAGTGTGGAATGGTTGTATGTGTG
TTTATACATGAAAACGGCTAGAACTACAATAAGTATTGTATGCTCTGGGA
TATTGATTCATTGTCAATCGTGGCTCCTacgtaaacaaaacaaaaacttt
tgcaGAGGTCTGGAGTAAAAACAACCCTTCACTCAGCCACACAAATGACC
TAAATTTATAATTAAGAAATGGCTCTTCAAAAACGTTATCAAGCACTAGA
AGAGCAGATAAAAAATCCAAGGAATGAGCTTTATGTGGAAGGTTTATTGG
ACTCGATCACATCCATTTACCATGACTGTGACTACCCAAGcatcagaaaa
gagaaaaattttgaaaactttctcaACAGATATGGTCATCTCGCCAAGGA
GATTGAAAAATCTCGTGTCAATATCACAGACTTCAACCTGATTAGGGTTA
TTGGCCGTGGTGCATTTGGAGAGGTTCAGCTGGTCAGACACAAAGACAAT
AAGACAGTCTATGCAATGAAATCACTGAGCAAATTTGAAATGATAAAACG
TTCTGAGTCTGCATTTTTCTGGGAAGAAAGAGATATTATGGCTCACtcaa
attctgattggattaTTTCACTTCACTATGCTTTTCAAGACGAAAAGTTT
TTATACATGATTATGGATTACATGCCAGGTGGCGACTTGGTAAACCTCAT
CGAAACTTACGACATCCCAGAAGGATGGGCAAAATTTTATCTGGCAGAAC
TTATATTGGCACTTGACGCAATACATTCAATGGGTTTCATTCACAGGGAT
ATTAAACCAGATAATATGCTGCTTGACCGGACAGGGCATATCAAATTAGC
AGATTTTGGGACATGTATGAAAATGGATAAAGATGGTTTAGTGCGATCAG
ACACAGCTGTGGGAACTCCTGATTATATATCTCCAGAGGTCCTTAAGTCA
CAGGGAAGTCAAGGAACTTATGGACGTGAATGTGACTTTTGGTCAGCTGG
TATCTTTCTTTATGAAATGCTTTTCGgggAAACACCATTTTACGCAGATT
CTCTTGTAGCAACTTATGG

Run BLAST on NCBI

transcript from alignment at scaffold_502:110384..118235+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069533 ID=TCONS_00069533|Name=TCONS_00069533|organism=Clytia hemisphaerica|type=transcript|length=7852bp|location=Sequence derived from alignment at scaffold_502:110384..118235+ (Clytia hemisphaerica)
TAAAAATCAAGGACCGTCATCAGATACTCCCAGCACGGTCGTTGTTTTCG
ATTTCGATTGGAGCGTGAAGCTGGAGATCAACTACGAggaaaaatacaca
aacagcCGTAAACTTTTTAGtcacccattttgatttttgatgattttgga
tTTATTCCTGAAAATTTAATTGTCTCAAGTGTGGAATGGTTGTATGTGTG
TTTATACATGAAAACGGCTAGAACTACAATAAGTATTGTATGCTCTGGGA
TATTGATTCATTGTCAATCGTGGCTCCTacgtaaacaaaacaaaaacttt
tgcaGAGGTCTGGAGTAAAAACAACCCTTCACTCAGCCACACAAATGACC
TAAATTTATAATTAAGAAATGGCTCTTCAAAAACGTTATCAAGCACTAGA
AGAGCAGATAAAAAATCCAAGGAATGAGCTTTATGTGGAAGGTTTATTGG
TAAGAACACTTAGAACACACTCTGGTTTATACTTTGAATAAGCATCATTT
GTTGCAGGTCTTACTTCTTCTATATCTACAATAAAGAAATCTGAATTGAG
ACTAATTGNAAGCAGAATAAGGTGTTGCTTTTTTTACGATTGCGCTGTCC
GTAGCTCATCATTTGTTGCAGGTCTTACTTCTTCTATATCtacaataaaa
aaatctgaattgAGACTAATTGGAATCAATGAAGCATGTTTTGTGATCTT
TTATAGtgccttttcaagcaaaaaagtcaTGATTGACCACACTCTGATCT
GTCAAGTCAGGCAGTTTTCATGTTTATACTTTAATTTTCTAAAGGAAAGT
TTCCAGACAGTCTAGTTGAATGCCGAAaaccaaactttttttttatttct
gaaaacAGAACTTTTTTCATGTATTTTCTGATCCATAAaattaaaagtta
aattaaaagttCCATTTTCGGAACTTTTTTTTGACGTAAAAGATTGACAT
GCGATCGGTAATTTGTAAAGGAATTTCTCTGCAAAccactaattttcaaa
aaacctaACCAAAGACAAATAAAACCGTaccttcaagatttttttatggT
TTGGAAGAAGAAAGATGAGATTAATTTTAAGGCACCTTTTTTCGTTTTGt
gaaaaaggtatttttgtttttactaaAATTCAATTGAAATGTCTTGAAGT
TGCAGCAAAACCAAGCATTACGTTTCAAAATTCCGacttcatagaggtca
atagacctgcaaAATATAttgttataaaataaaattataaaaacagtTCT
GTTTTCGTAATTAAGTACCGTAAACTGCTCTAAcctgggacgattggtca
aaacatgggactgttgcatatctggtctgtattttcacttactgtaaaat
caaaagagaaatcgtgtatttttaaatatgcCGTATcataactcaaatca
aatgactttggaggttcggtgaaatggtggccaaattgccgtcccatttg
tcagatagtcccaagttagagcggTTGACGGTAAGAAGTTTCGTTTTCAG
CATTTCACTAACTAGACTGCCAGAAGGAGCCAGAAAATGTCATTGATTTT
GCACCATTTTTTGAGGCAAAAAATTATCGAAACTAACTCAAAATTGTGAA
TTCTCTACcctaaaaataaacttaaacaACTAAACTTCTGACAggttttt
taatgaatttgatCTTTATGATCACAGATCAACTGAACATCTTTATCTTA
TCAGGTAAAACCTTTCCTGAAAAAAGGACTGTAAGATGACGGTTTAACTT
ATTGAAACTATATTCTTGGTGATTCCAACTTTCCTAATATTCCCATCTCT
AAAGAGGGGTGTCGGAATTGCTGATTTTGATAGCAAACTAAACTTCTTTG
CTTAGAGCTGAGAGAGGAATCTTTTTTTCCAATCAGTGATTCCTACCTTG
CTATTATTCTACCGGTTTCTCAATATATTGTAAGTTTACAGATAAGAATT
TCCTCTGGATTCTTTTTCTATTGTACAGAAAAAAgcctaacttaaatttt
ggtgtataaatttttttaaatcagctCAGTCAGTTAAAacttatgttaaa
aaaattgaaaattttaacctACCCAAAATGTCAAATGTCATTAAAAACAG
TTAGCCAAATTTAGTTAATTGCAACCCTCAGTTAATTATAACTTTAAACA
GTTGAATAGCcctgaaattttaaattctgCATATTTGGTAAAACATTGCG
CTACacttgttttcttttataaaaacaatgaggctcaaaatcgccaaaaa
aaaagaacaatgctgagcctaaaattactcaatttcaagcaatttagggg
tctaagaatttaaaaaacaattggGTATAACGTCTAAAATAAATTAACCA
ATCAATtaaccctataaataagaacaggataagaacaattcaaggctcaa
aatgccaaaaaataagaacagctggGCCTCAGCAAAGTTTAactggttct
aataaaaaaagtgtatttcaaAATAACCAGATTGTTTTTAAACTGATAAC
TTGATAATGATAACAAGTCAATTTCTTAGCAATTGATTTTTTCTGAGTGA
GTATTTCACTATACAAGTGTGTGCACACAAGGCTAAAAAGTAATTGAAAA
GTCATTAGGCTATTTTATATCATTGGACTTATGGACTTATATAAcaggca
tcgaaataagggatagaaagtgcatcgcaattttttgataagcatgattt
tgcatcctaaaatggatcaattttcaatttttagcttgtaagtaatccaa
aaaTGCACAGCGAATTGCAAAATGCGATacgctaattcgatccctgTATA
ACCTAATGTTAGCATTTTGTACTTTTAGGCTCAGTGTGCAGATGTTTTGC
TTTTAAACAAAAACAGTTAAGATAAAAATAAGGTGCATTGAAATTGGTCT
ACTTCCAAGTTATCATGGCGCTAAGATTATAGAATACATTACTTCTTTTA
ATACACATCTACAGTAGgttgaatatttcaatttaaaaaaggtttgtgaa
aatcaacaaaattataAAGCTATAAATACCAAATGTAATTGTTCTTTGAA
TTGTACTGTCTcctaaaagaaatataaaatatcaaaaactagattGTGAA
ATAGTCTCATGCTATAAAATTAGATAGTTAGTAAAATATTGTACATTTAG
GATCTGAAGATAAAAATTATCTGGGAAATCTGTACATTATTCAAAACGTG
TAATAGTTTCATAACTTTAACTTACAAGTGGTATATATTTGATTTAAAGT
CTCttatttattattttccaaaaagtacTTAGAGTATATTTCTTATCACA
TGAAAGGTGCTGAAAAATATAGGATTTTTTAGGGAAGATAGTCACATTAC
TGACAAATTAAAGTTATTATATAATATCTTCACTTGTTTCAGGACTCGAT
CACATCCATTTACCATGACTGTGACTACCCAAGcatcagaaaagagaaaa
attttgaaaactttctcaACAGATGTAAGATTTTTTGTATTATCTTGTTG
CTGCATTAcaaaggcctggaaattcagaTATTACAATACTTTGTATAcag
aaaaaatgataaatataagTTTGGCagaatgaaatattttcaaaaaaact
tcatcATAATTTTCTATGTTATAATAACTTGATATGTTTTTTAGATGGTC
ATCTCGCCAAGGAGATTGAAAAATCTCGTGTCAATATCACAGACTTCAAC
CTGATTAGGGTTATTGGCCGTGGTGCATTTGGAGAGGTTCAGCTGGTAAG
AAAAAAAGACCCTTTCATACCTTATATTCATCTGTTCTTAACCTAAAATT
TGTCCGATAAAAATCTCTTATAAAtctgttttttgaaattgtttatgttt
tgtttctttgatttttagGTCAGACACAAAGACAATAAGACAGTCTATGC
AATGAAATCACTGAGCAAATTTGAAATGGTAACTTTTTCTACAAAGAAAT
CTTTTCCTAAACCATTTTAATCATACTTTATTGACAGAGACTTCTCTTGA
ATTTAGCTAATGTTTTTACTCTGTTAATGTTATTTTGATTACTAGGGGTC
ATTTGCCTGTCTCACTTCCTTGTAAAACACAAAGTTAGTTTATGTTTAAC
TAAAGCTCATGACCTTCTTATAATCAACCTGAAAACTGATGTCANTACCT
AAAATTTGACTAATAAAAATCTCTTATAAAtctgttttttgaaattgttt
atgttttgtttctttgatttttagGTCAGACACAAAGACAATAAGACAGT
CTATGCAATGAAATCACTGAGCAAATTTGAAATGGTAACTTTTTCTACTA
AGAAATCTTTTCCTAAACCATTTTAATCATACTTTATTGACAGAGACTTC
TATTGAATTTAGCTAATGTTTTTACTCTGTTAATGTTATTTTGATTACTT
AGGGGTCATTTGCCTGTCTCACTTCCTTGTAAAACACAAAGTTAGTTTAT
GTTTAACTAAAGCTCATGACCTTCTTATAATCAACCTGAAAACTGATGTC
ACTTTTATAATGTCAAAATGCAGCTCAAGTGAATACTCATTTTTGTAATA
ATCTTTCTTTTAACCAATTGTCGTTCATTTAGATAAAACGTTCTGAGTCT
GCATTTTTCTGGGAAGAAAGAGATATTATGGCTCACtcaaattctgattg
gattaTTTCAGTTAGTATATATCTTCTCTATTTCCATTGAACATTTTCAT
TTCCAACACCAAactcaatttttgttttcattagtgAACTTTCTCAAATA
TCTTTTCAGGCCATTTTTGCAGGCATCACATATTTTCCCCAattcttgct
tgaaaaaaagtattttctgCCCTTGGCTAAGGCTGCTCTGTCCTTCCAGA
ATTTGTTCCCTGAGAGCCAaactaaatgggtttttatttttttaaagtat
aatAAAACTGTAAACTTCCTCAAACCTCTCAAGCCTTTTCGCTTCTTTAC
ATGAAAATCACAAAGAATTgctttgaacatttttttaatttgtttttttt
tagcttCACTATGCTTTTCAAGACGAAAAGTTTTTATACATGATTATGGA
TTACATGCCAGGTATATAATACTTGCTGCTAGCTTTATTTCCTGAAACAA
TCAACTGTGCTTTTTAGAACCTGCTAATTTgcatcaaatttaatttataa
taGTATTTTTATCATAGAAACAATCAATTAGATGAAAGTTATTATTTGAG
AATTTTTATTTAAGGTGGCGACTTGGTAAACCTCATCGAAACTTACGACA
TCCCAGAAGGATGGGCAAAATTTTATCTGGCAGAACTTATATTGGCACTT
GACGCAATACATTCAATGGGTTTCATTCACAGGTTTGTGGTAGTAATTCT
CCCCTTtatcaaatcaatcaaacagAAAGAATGGTCTACTAATAATTTGC
CTTATTATGGTGTCTCCAGACatgctttttattttttatgaattgaTATT
TCAGGGATATTAAACCAGATAATATGCTGCTTGACCGGACAGGGCATATC
AAATTAGCAGATTTTGGGACATGTATGAAAATGGATAAAGATGGTTTAGT
GCGATCAGACACAGCTGTGGGAACTCCTGATTATATATCTCCAGAGGTAT
AGGTCATGtttaatattttgttatttGTCCTTTTAGTTAACAATATAAAT
GTTGAATTGCTGAATTGCTGAATGTTATGTCTGATTATATGATATTATAC
TATCTCTATCTACTCAATGGTGTTGGTTGTTCTGAAGTTTGATCCTGTGC
CAATTATCTGTCNTAGCTTCACTATGCTTTTCAAGACGAAAAGTTTTTAT
ACATGATTATGGATTACATGCCAGGTATATAATACTTGCTGCTAGCTTGA
TTTCCTGAAACAATCAACTGTGCTTTTTAGAACCTGCTAATTTgcatcaa
atttaatttataataGTATTTTTATCATAGAAACAATCAATTAGATGAAA
GTTATTATTTGAGAATTTTTATTTAAGGTGGCGACTTGGTAAACCTCATC
GAAACTTACGACATCCCAGAAGGATGGGCAAAATTTTATCTGGCAGAACT
TATATTGGCACTTGACGCAATACATTCAATGGGTTTCATTCACAGGTTTG
TGGTAGTAATTCTCCCCTTtatcaaatcaatcaaacagAAAGAATGGTCT
ACTAATAATTTGCCTTATTATGGTGTCTCCAGACatgctttttatttttt
atgaattgaTATTTCAGGGATATTAAACCAGATAATATGCTGCTTGACCG
GACAGGGCATATCAAATTAGCAGATTTTGGGACATGTATGAAAATGGATA
AAGATGGTTTAGTGCGATCAGACACAGCTGTGGGAACTCCTGATTATATA
TCTCCAGAGGTATAGGTCATGtttaatattttgttatttGTCCTTTTAGT
TAACAATATAAATGTTGAATTGCTCAATGTTATGTCTGATTATATGATAT
TATACTATCTCTATCTACTCAATGGTGTTGGTTGTTCTGAAGTTTGATCC
TGTGCCAATTATCTGTCTCATTTTCTTTACCTAGGTCCTTAAGTCACAGG
GAAGTCAAGGAACTTATGGACGTGAATGTGACTTTTGGTCAGCTGGTATC
TTTCTTTATGAAATGCTTTTCGGTATGCGTTTTCAATGTTTTATATACTG
GTATTGTCTTTCAATTTATGTCTCAGATTTCCTATtttagttttcaaaaa
caaagtaaTATTCTATATGTTGTTTTAGTAGGAAATGATTTCCAAATAac
ctttgattttattttttcaggggAAACACCATTTTACGCAGATTCTCTTG
TAGCAACTTATGGTAAGAATTTTATATAATTGAGTTTTGGAAGGTTTGGA
CTAAAAAGTTGCTTAGCTGTTAGTGGATTTGAAATGTGTAAGTGTGAGCA
TCTTCCTTAAAGGAAAAAGAGAACAAAGTTCATTAAAATATTATATACTA
AATTCATTAAACGCTCAATTTCTCCCATCTTTTCCAGGAAATATTATGAA
TCATAGGAATGTTTTATCATTCCCAGATGATTTTGAAATCGGCAACAATG
CCAAGACGCTCATTTGTGCATTTCTAACAGACAGGTATACAAATGAAACT
ATTTTCCATTTTGTCACATGATAAAATGACAatcattttataattttgat
gaacTCTACTGAAGTATTTTTGAATATTAATATGTTTTTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGAATTGCTCAATGTTATGTCTGATTATATGATATTATACTATCTC
TATCTACTCAATGGTGTTGGTTGTTCTGAAGTTTGATCCTGTGCCAATTA
TCTGTCTCATTTTCTTTACCTAGGTCCTTAAGTCACAGGGAAGTCAAGGA
ACTTATGGACGTGAATGTGACTTTTGGTCAGCTGGTATCTTTCTTTATGA
AATGCTTTTCGGTATGGGTTTTCAATGTTTTATATACTGGTATTGTCTTT
CAATTTATGTCTCAGATTTCCTATtttagttttcaaaaacaaagtaaTAT
TCTATATGTTGTTTTAGTAGGAAATGATTTCCAAATAacctttgatttta
ttttttcaggggAAACACCATTTTACGCAGATTCTCTTGTAGCAACTTAT
GG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043338	XLOC_043338	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_502	supercontig	scaffold_502:110384..118235 +

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00069533 vs. Swiss-Prot (Human)
Match: ROCK2 (Rho-associated protein kinase 2 OS=Homo sapiens GN=ROCK2 PE=1 SV=4)

HSP 1 Score: 430.254 bits (1105), Expect = 1.032e-137
Identity = 190/278 (68.35%), Postives = 233/278 (83.81%), Query Frame = 3

Query:  384 RYQALEEQIKNPRNELYVEGLLDSITSIYHDCDYPSIRKEKNFENFLNRYGHLAKEIEKSRVNITDFNLIRVIGRGAFGEVQLVRHKDNKTVYAMKSLSKFEMIKRSESAFFWEERDIMAHSNSDWIISLHYAFQDEKFLYMIMDYMPGGDLVNLIETYDIPEGWAKFYLAELILALDAIHSMGFIHRDIKPDNMLLDRTGHIKLADFGTCMKMDKDGLVRSDTAVGTPDYISPEVLKSQGSQGTYGRECDFWSAGIFLYEMLFGETPFYADSLVATY 1217
            R + LE  I++PR+ + VE LLD + S+  D D+P++RK KN +NFLNRY  + K+I   ++   D+++++VIGRGAFGEVQLVRHK ++ VYAMK LSKFEMIKRS+SAFFWEERDIMA +NS W++ L YAFQD+++LYM+M+YMPGGDLVNL+  YD+PE WAKFY AE++LALDAIHSMG IHRD+KPDNMLLD+ GH+KLADFGTCMKMD+ G+V  DTAVGTPDYISPEVLKSQG  G YGRECD+WS G+FLYEML G+TPFYADSLV TY
Sbjct:   26 RQRKLEALIRDPRSPINVESLLDGLNSLVLDLDFPALRKNKNIDNFLNRYEKIVKKIRGLQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVHCDTAVGTPDYISPEVLKSQGGDGFYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTY 303

The following BLAST results are available for this feature:

BLAST of TCONS_00069533 vs. Swiss-Prot (Human)

BLAST of TCONS_00069533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ROCK2	1.032e-137	68.35	Rho-associated protein kinase 2 OS=Homo sapiens GN...	[more]

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TCONS_00069533 (transcript) - C. hemisphaerica