|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069529 ID=TCONS_00069529|Name=TCONS_00069529|organism=Clytia hemisphaerica|type=transcript|length=1745bp
TGGGAATATTGCATGTAAATTAGTAGTTTTGAATTTCGTTTTCTGCCGTG
TCTCGGTGGCGCAGTGGAGAGCGTGCGGGATTTCAAATACAATGGttgtg
ggttcgaatcccatcgtCGACGAATGTTCTGAAGTTTCTGGAAATCGTTC
AGAAACTATGTCTGTTACTGGTCTCTTACTGAtatattttaattgttttg
tttagATTCTGAAGTATCCTTTGAGAGTCCGCCAGCAAAAAGGCGAAAAC
CCAATGAATCGACGAAAAAGGAATAGCACGAGTGCAGaaaaacccaattt
tttaaTGCGACGCAGTTGCGCTTGCTTTGCTTTGTCCACAAGGAAATGAT
AACTGATCCGACGAAAAGCATCGACAACGTCGTATACAGTACCCTGAATG
ACAAATATCGCGAGATATATGGGTTCGACGAGGTCGACAAAATCTCCATC
ACAAAGGAAAGGCCGTGGCAAAAGATTAAGGAGGTGATCAGAAATATTCG
GACGAAAGCTGTCAAGGACGCTGATGGATTCAAAGAGTTCATGTTGGAGG
GCAAAGCCATATGGCGAAAATCTTTTTTACCCgagtaaaaatcttttttt
tcctaAGGTTCCTTTATTGTCTTTAGTTATCAGCTCTGCCAATAATATTA
ATAGCTAATGATCAACTTCTTCTCTATCGATCGGCATATAAATATACTCC
TTAAATAACTTTTCATCGAGATCATCGAAGCACCGCACGAGTCGATCGTC
CGTGACCTTCTCTCCAGTTGCGCGCTTCACAGATTTTTATTTCGTCTAAG
CTAATGatttttcttcattcgtttGCATTCTTTTTTCGTTGATTCATTGG
GTTTTCACAGTTAGGGCATTGTCCGGAACGGTTCAGAATTTGTTTACTAA
AAATATAATTACATTTTGAAGGATTTCCTACAGTGATGAATCAAGGGCAT
CTTGTGTTTCTTGTGGTATCCCAGTGACTCATAATTCACGTCTCACTAGg
gttttctgtttttttatttagaaacATACATTTACTATTGTGTATGATAC
GAGTGTACGATTTCAGCTCGTTTTTGCATTTTCTAACGCCTCAATCAGCC
GTTCAGCACCTTTGTCATTTTAGATATTTGCTATTTTAAATCACACtagc
tttcttttcttttatctAGCTGCATATTCTCATAACTAAATCTTTGCGTT
TTTTCAATTCGTCAGAAACTAGATCAGTTCTCTCCCATCCTCTTTGCGTT
CGTTTTACACATGTTAGGTATCATTTGAGGTATTCCATGGAAAGGTTCAG
AATTTCGAAGGATTTCTTCCAGTGAGGAATCAAGTGCATCCTGTGCTTTT
CCTGGTATCCCAGTGACTCATAATTTACGTCTCACTAGGGTTTTCTGTTA
TTTATTTAGTAACATACAATTACTATTTAGAAACATTTACTAACGTGTCA
AGATTTAGTTACTTTTACTTTTGTTCCTGTTAAACTTGTAATTAGTTAgc
agtttaaaaaaaagacattaTCTTCTAAAGACAAATCTAACCCTAACAAA
CTCTGTGTCTTTCAGCTCTGAATACCATAATACGTTCTGACCCATAGTTC
TATAATCAATATTCAATAGAAAATATTGATAATtaataaataaagaaaat
taaaaagttatatTATATCCCGAATTGTAGGTACTTTAAGTCCCGATTTT
CcaggtttcaatttttttccgcCGCGGTTTTCCGGCGGGCGTTTT Run BLAST on NCBI transcript from alignment at scaffold_502:96937..98741+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069529 ID=TCONS_00069529|Name=TCONS_00069529|organism=Clytia hemisphaerica|type=transcript|length=1805bp|location=Sequence derived from alignment at scaffold_502:96937..98741+ (Clytia hemisphaerica)
TGGGAATATTGCATGTAAATTAGTAGTTTTGAATTTCGTTTTCTGCCGTG
TCTCGGTGGCGCAGTGGAGAGCGTGCGGGATTTCAAATACAATGGttgtg
ggttcgaatcccatcgtCGACGAATGTTCTGAAGTTTCTGGAAATCGTTC
AGAAACTATGTCTGTTACTGGTCTCTTACTGAtatattttaattgttttg
tttagATTCTGAAGTATCCTTTGAGAGTCCGCCAGCAAAAAGGCGAAAAC
CCAATGAATCGACGAAAAAGGAATAGCACGAGTGCAGaaaaacccaattt
tttaaTGCGACGCAGTTGCGCTTGCTTTGCTTTGTCCACAAGGAAATGAT
AACTGATCCGACGAAAAGCATCGACAACGTCGTATACAGTACCCTGAATG
ACAAATATCGCGAGATATATGGGTTCGACGAGGTCGACAAAATCTCCATC
ACAAAGGAAAGGCCGTGGCAAAAGATTAAGGAGGTGATCAGAAATATTCG
GACGAAAGCTGTCAAGGACGCTGATGGATTCAAAGAGTTCATGTTGGAGG
GCAAAGCCATATGGCGAAAATCTTTTTTACCCgagtaaaaatcttttttt
tcctaAGGTTCCTTTATTGTCTTTAGTTATCAGCTCTGCCAATAATATTA
ATAGCTAATGATCAACTTCTTCTCTATCGATCGGCATATAAATATACTCC
TTAAATAACTTTTCATCGAGATCATCGAAGCACCGCACGAGTCGATCGTC
CGTGACCTTCTCTCCAGTTGCGCGCTTCACAGATTTTTATTTCGTCTAAG
CTAATGatttttcttcattcgtttGCATTCTTTTTTCGTTGATTCATTGG
GTTTTCACAGTTAGGGCATTGTCCGGAACGGTTCAGAATTTGTTTACTAA
AAATATAATTACATTTTGAAGGATTTCCTACAGTGATGAATCAAGGGCAT
CTTGTGTTTCTTGTGGTATCCCAGTGACTCATAATTCACGTCTCACTAGg
gttttctgtttttttatttagaaacaTACATTTACTATTGTGTACGATAC
GAGTGTACGATTTCAGCTCGTTTTTGCATTTNAACATACATTTACTATTG
TGTATGATACGAGTGTACGATTTCAGCTCGTTTTTGCATTTTCTAACGCC
TCAATCAGCCGTTCAGCACCTTTGTCATTTTAGATATTTGCTATTTTAAA
TCACACtagctttcttttcttttatctAGCTGCATATTCTCATAACTAAA
TCTTTGCGTTTTTTCAATTCGTCAGAAACTAGATCAGTTCTCTCCCATCC
TCTTTGCGTTCGTTTTACACATGTTAGGTATCATTTGAGGTATTCCATGG
AAAGGTTCAGAATTTCGAAGGATTTCTTCCAGTGAGGAATCAAGTGCATC
CTGTGCTTTTCCTGGTATCCCAGTGACTCATAATTTACGTCTCACTAGGG
TTTTCTGTTATTTATTTAGTAACATACAATTACTATTTAGAAACATTTAC
TAACGTGTCAAGATTTAGTTACTTTTACTTTTGTTCCTGTTAAACTTGTA
ATTAGTTAgcagtttaaaaaaaagacattaTCTTCTAAAGACAAATCTAA
CCCTAACAAACTCTGTGTCTTTCAGCTCTGAATACCATAATACGTTCTGA
CCCATAGTTCTATAATCAATATTCAATAGAAAATATTGATAATtaataaa
taaagaaaattaaaaagttatatTATATCCCGAATTGTAGGTACTTTAAG
TCCCGATTTTCcaggtttcaatttttttccgcCGCGGTTTTCCGGCGGGC
GTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069529-exon-scaffold_502-1491911889:96937..97961 | TCONS_00069529-exon-scaffold_502-1491911889:96937..97961 | Clytia hemisphaerica | exon |
| TCONS_00069529-exon-scaffold_502-1510915933:96937..97961 | TCONS_00069529-exon-scaffold_502-1510915933:96937..97961 | Clytia hemisphaerica | exon |
| TCONS_00069529-exon-scaffold_502-1575043694:96937..97961 | TCONS_00069529-exon-scaffold_502-1575043694:96937..97961 | Clytia hemisphaerica | exon |
| TCONS_00069529-exon-scaffold_502-1491911889:98022..98741 | TCONS_00069529-exon-scaffold_502-1491911889:98022..98741 | Clytia hemisphaerica | exon |
| TCONS_00069529-exon-scaffold_502-1510915933:98022..98741 | TCONS_00069529-exon-scaffold_502-1510915933:98022..98741 | Clytia hemisphaerica | exon |
| TCONS_00069529-exon-scaffold_502-1575043694:98022..98741 | TCONS_00069529-exon-scaffold_502-1575043694:98022..98741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:96937..98741 + |
Blast
The following BLAST results are available for this feature:
|
