TCONS_00069526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069526
Unique NameTCONS_00069526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069526 ID=TCONS_00069526|Name=TCONS_00069526|organism=Clytia hemisphaerica|type=transcript|length=426bp
aGAATTAAATGGTGACGAAGAATCTCTCGCTGTTGATGACTTGAACTCTA
GTAATGTTTCTGAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCA
GATTCTATTGAAGTGAAAAGGCTTCCCATCCACATTCTAAAACGTTACGC
GAGTCATGTGGCCAAGGTCGAGCCAGATCGGATCAGGTCGTATGCCCAGG
AGATTAAGCAAGAAATCCTATTACTGGCAAGGGGGAAACTACCATCGTTT
CGATTCGACATATTTACCAGAAACCCAATTGCTCAACATTTTCGACCTGC
CaTGAATCCTGATGGATCAATTTAccgtaaaattattttgagccaCGAAC
TACAGCAATATTCTCTAGATGGTGGGATCCCAGACAACGCACAGGATGCC
CTTGATTCCTCCCTGGAAGAAATCAT
Run BLAST on NCBI

protein sequence of TCONS_00069526-protein

>TCONS_00069526-protein ID=TCONS_00069526-protein|Name=TCONS_00069526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
ELNGDEESLAVDDLNSSNVSEVLNSTQLTEVFADSIEVKRLPIHILKRYA
SHVAKVEPDRIRSYAQEIKQEILLLARGKLPSFRFDIFTRNPIAQHFRPA
MNPDGSIYRKIILSHELQQYSLDGGIPDNAQDALDSSLEEI
Run BLAST on NCBI

transcript from alignment at scaffold_502:94050..95609+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069526 ID=TCONS_00069526|Name=TCONS_00069526|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_502:94050..95609+ (Clytia hemisphaerica)
aGAATTAAATGGTGACGAAGAATCTCTCGCTGTTGATGACTTGAACTCTA
GTAAGAATTTGCATTATATCCACAGCTTATCAATAAGGTATTAATTATAA
CGAGCACTTGTCCTGTAACTCATCAATTGAGCTCATTGTATCGAATTCGG
GATACAAAGTAACCTTGTTTTGTAACCCTAATCCATCTTCATTCAAGCTG
GTTAAACTTTCATTCCTTTCTATACTGGAAATGATGTTAGCAAAGACTTG
AATTCATGTTTTAGGTAATGTTTCTGAGGTTTTAAATTCAACTCAATTAA
CGGAGGTGTTTGCAGATTCTATTGAAGGTAAGAATTTCCATCAGAATTGT
TTTACAAACATGACAGCCATAATCTAAGGTTTGTGACTGTGTGTCTATAA
ATCTTTTACATCCTTTTAAATCCATAATTCtcttatatttctttattcag
TGAAAAGGCTTCCCATCCACATTCTAAAACGTTACGCGAGTCATGTGGCC
AAGGTCGAGCCAGATCGGATCAGGTCGTATGCCCAGGAGATTAAGCAAGA
AATCCTATTACTGGCAAGGGGGAAACTACCATCGTTTCGATTCGACATAT
TTACCAGAAACCCAATTGCTCAACATTTTCGACCTGCCGTAAGTATGTAT
GTCAGGAAATACCCCCCAAAATCCCTTCAAACCACATAGAAACTACCAAT
AAAGGTTCCCTATCTCATATTATGATATTTAGTTGCTAAAACCAAGAAAA
AACCAGACATGATTTTTCAGTCCAAAAACCCATCAAACATCTACTGTCCA
CCATTAAAAACATGtcttgtttacatttgaaaaatgCACCGACATTGAGC
TCAGATATCTCGAGATGTATAAAAGCAGGACCcgtgaaattttgaatgaa
tgaaccTCGACCCCCACTCTGTCTGCTACATTTTACagaatagaaaaatt
tcaagtggtctttattttattaaactttgaagTAACCCAAGTCTAAgaac
gtacgtggtacgtcgtTCGGCCTGTATATGCGACGTACACTGTACATCGT
TCGACTTCTAAAGGTTAAGACTCTTGATCGTAAAGACTGACCCTAACATT
TTAATAacgaaacatttttttgtttaatagaTGAATCCTGATGGATCAAT
TTAccgtaaaattattttgagccaCGAACTACAGCAATATTCTCTAGATG
GTGagttttctttttatctttcctaacttttcagacttttctaGAAACTG
AATTATGATTCGGGATATGGTACAGTCTACCAAAATTGACTTTTCTTTGC
ATCTGTTTCAACGGGGCAGACTCTTTCTAATCTGAATTAAAATGGTACAG
TCtacgaaaattttaaaactcaCATAGACGATTGaagtttcttataagaa
aattgTCGCTTTTAGGGCTTCCAAATCCTTGGGTATTCGTTATACCGAGT
TGATGCTAATCGTTATAGCTGAATtattcaattactcaaattcgATTTTG
CTTAGGTGGGATCCCAGACAACGCACAGGATGCCCTTGATTCCTCCCTGG
AAGAAATCAT

Coding sequence (CDS) from alignment at scaffold_502:94050..95609+

>TCONS_00069526 ID=TCONS_00069526|Name=TCONS_00069526|organism=Clytia hemisphaerica|type=CDS|length=2115bp|location=Sequence derived from alignment at scaffold_502:94050..95609+ (Clytia hemisphaerica)
GAATTAAATGGTGACGAAGAATCTCTCGCTGTTGATGACTTGAACTCTAG
TAATGTTTCTGAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCAG
ATTCTATTGAAGTGAAAAGGCTTCCCATCCACATTCTAAAACGTTACGCG
AGTCATGTGGCCAAGGTCGAGCCAGATCGGATCAGGTCGTATGCCCAGGA
GATTAAGCAAGAAATCCTATTACTGGCAAGGGGGAAACTACCATCGTTTC
GATTCGACATATTTACCAGAAACCCAATTGCTCAACATTTTCGACCTGCC
aTGAATCCTGATGGATCAATTTAccgtaaaattattttgagccaCGAACT
ACAGCAATATTCTCTAGATGGTGGGATCCCAGACAACGCACAGGATGCCC
TTGATTCCTCCCTGGAAGAAATCGAATTAAATGGTGACGAAGAATCTCTC
GCTGTTGATGACTTGAACTCTAGTAATGTTTCTGAGGTTTTAAATTCAAC
TCAATTAACGGAGGTGTTTGCAGATTCTATTGAAGTGAAAAGGCTTCCCA
TCCACATTCTAAAACGTTACGCGAGTCATGTGGCCAAGGTCGAGCCAGAT
CGGATCAGGTCGTATGCCCAGGAGATTAAGCAAGAAATCCTATTACTGGC
AAGGGGGAAACTACCATCGTTTCGATTCGACATATTTACCAGAAACCCAA
TTGCTCAACATTTTCGACCTGCCaTGAATCCTGATGGATCAATTTAccgt
aaaattattttgagccaCGAACTACAGCAATATTCTCTAGATGGTGGGAT
CCCAGACAACGCACAGGATGCCCTTGATTCCTCCCTGGAAGAAATCGAAT
TAAATGGTGACGAAGAATCTCTCGCTGTTGATGACTTGAACTCTAGTAAT
GTTTCTGAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCAGATTC
TATTGAAGTGAAAAGGCTTCCCATCCACATTCTAAAACGTTACGCGAGTC
ATGTGGCCAAGGTCGAGCCAGATCGGATCAGGTCGTATGCCCAGGAGATT
AAGCAAGAAATCCTATTACTGGCAAGGGGGAAACTACCATCGTTTCGATT
CGACATATTTACCAGAAACCCAATTGCTCAACATTTTCGACCTGCCaTGA
ATCCTGATGGATCAATTTAccgtaaaattattttgagccaCGAACTACAG
CAATATTCTCTAGATGGTGGGATCCCAGACAACGCACAGGATGCCCTTGA
TTCCTCCCTGGAAGAAATCGAATTAAATGGTGACGAAGAATCTCTCGCTG
TTGATGACTTGAACTCTAGTAATGTTTCTGAGGTTTTAAATTCAACTCAA
TTAACGGAGGTGTTTGCAGATTCTATTGAAGTGAAAAGGCTTCCCATCCA
CATTCTAAAACGTTACGCGAGTCATGTGGCCAAGGTCGAGCCAGATCGGA
TCAGGTCGTATGCCCAGGAGATTAAGCAAGAAATCCTATTACTGGCAAGG
GGGAAACTACCATCGTTTCGATTCGACATATTTACCAGAAACCCAATTGC
TCAACATTTTCGACCTGCCaTGAATCCTGATGGATCAATTTAccgtaaaa
ttattttgagccaCGAACTACAGCAATATTCTCTAGATGGTGGGATCCCA
GACAACGCACAGGATGCCCTTGATTCCTCCCTGGAAGAAATCGAATTAAA
TGGTGACGAAGAATCTCTCGCTGTTGATGACTTGAACTCTAGTAATGTTT
CTGAGGTTTTAAATTCAACTCAATTAACGGAGGTGTTTGCAGATTCTATT
GAAGTGAAAAGGCTTCCCATCCACATTCTAAAACGTTACGCGAGTCATGT
GGCCAAGGTCGAGCCAGATCGGATCAGGTCGTATGCCCAGGAGATTAAGC
AAGAAATCCTATTACTGGCAAGGGGGAAACTACCATCGTTTCGATTCGAC
ATATTTACCAGAAACCCAATTGCTCAACATTTTCGACCTGCCaTGAATCC
TGATGGATCAATTTAccgtaaaattattttgagccaCGAACTACAGCAAT
ATTCTCTAGATGGTGGGATCCCAGACAACGCACAGGATGCCCTTGATTCC
TCCCTGGAAGAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043336XLOC_043336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069526-exon-scaffold_502-1491911889:94050..94099TCONS_00069526-exon-scaffold_502-1491911889:94050..94099Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1510915933:94050..94099TCONS_00069526-exon-scaffold_502-1510915933:94050..94099Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1575043694:94050..94099TCONS_00069526-exon-scaffold_502-1575043694:94050..94099Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1491911889:94314..94376TCONS_00069526-exon-scaffold_502-1491911889:94314..94376Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1510915933:94314..94376TCONS_00069526-exon-scaffold_502-1510915933:94314..94376Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1575043694:94314..94376TCONS_00069526-exon-scaffold_502-1575043694:94314..94376Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1491911889:94500..94687TCONS_00069526-exon-scaffold_502-1491911889:94500..94687Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1510915933:94500..94687TCONS_00069526-exon-scaffold_502-1510915933:94500..94687Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1575043694:94500..94687TCONS_00069526-exon-scaffold_502-1575043694:94500..94687Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1491911889:95180..95249TCONS_00069526-exon-scaffold_502-1491911889:95180..95249Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1510915933:95180..95249TCONS_00069526-exon-scaffold_502-1510915933:95180..95249Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1575043694:95180..95249TCONS_00069526-exon-scaffold_502-1575043694:95180..95249Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1491911889:95555..95609TCONS_00069526-exon-scaffold_502-1491911889:95555..95609Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1510915933:95555..95609TCONS_00069526-exon-scaffold_502-1510915933:95555..95609Clytia hemisphaericaexon
TCONS_00069526-exon-scaffold_502-1575043694:95555..95609TCONS_00069526-exon-scaffold_502-1575043694:95555..95609Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069526-proteinTCONS_00069526-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_502supercontigscaffold_502:94050..95609 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.114498	0	0.163052	0	0	0.160929	0	0	0	0	0.0825506	0	0.503188	0	0	0	0	0.187457	0	0.611873	0.442084	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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