|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069524 ID=TCONS_00069524|Name=TCONS_00069524|organism=Clytia hemisphaerica|type=transcript|length=1256bp
CAATGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGGGGATATCG
CCAAAGCGGCCCCAACAACACCTGAAGACGGTTTTTGTGGCTTTGAATTC
AAGTCCTCCAAGTACAAGACATGTATCATTTACGGAGATAAAGTGATGTG
GGTCAACAGAGAATTATATGATTTTATTAACGGCTACATTGAATTCATCC
GTCCCCTGATCGCCCCAGCAGACTCCAAGCTCTTATTTACAAGCTCCTCG
AAGAGAGCCGAGGTAcaacaaaatgaagaagaagaagaaaaggatccTGG
GCTCATGGAACATCCCATGATTTCATCTGCCTTCAGTCGTTCGTTCCAGA
AAGCCGGTGTATTCCAATCAAGTGACAATACCAGAGTTCCCCGTCCCGCC
TCCGTTGCGCTGCATGCACGGAGCTTGTTGGCGTGGACGGCGAAAACAGC
GACAATGTAGCTCTGCATTATATGAAGCACAGACCCGGTACATCACACCA
ATACTATACAGCCTATTGGGAGAACAGGGAAGCGTTGCGCATCTCGATGA
AGTGTTACTCAAAGTTCCTGCCCGGCAAAGAAACGGAGAGAATCGTGGCC
GATCGAAACAGAATGTTATCTCAACAGAAACCACCATCGAAAAATGATAT
GAAGAAATGGTTTAATAACTTGGCCAAGCTGATACAGGGCTCCACCGGAA
AGAAATACACCGACGACCGACTTATGGCATGCTTTGATGACCTAGAAGAT
AAAAACGTTGATTGTGAGCTTTTATCGTTTAATCCCATTAAATTAATTAA
TATGAATTTACATGAACTTTTTTATACCTAGAGCTGAACAGAATGATGTG
CTCTAGTCTGAATTGAAATTCGGGATATGGTACAGTCTGTGTTGATATCA
ATTCATAATTCTCTATTTATTGTGTGATTTATgatatgttttttttcaaa
tttttagttacAAAGTCTCTGGCTGGTCCATCTGAAAAAGTACAAGAAAC
TGGTAAGCTATCTTTTGAATCAGATTATCATTAACATTTGATTATTCATA
CCAGGCGTAGGTGTCCGAGAATCCACCCAAAACGCATATTAATCTATGTC
TGACTATGTCTGTCTAACCCTAACGAATTTACATGAACTCTTTGTGCTTG
TCTGAATTACAATTCGGGATATGGTACAGTCTAAGACAGATCCATTTAGG
CATTCATTGCAGAGTTATTACTAATCGTTCGTGCTGAAGGATTCCTCGTA
CTggaa Run BLAST on NCBI protein sequence of TCONS_00069524-protein >TCONS_00069524-protein ID=TCONS_00069524-protein|Name=TCONS_00069524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
NGARASNLMNISLGDIAKAAPTTPEDGFCGFEFKSSKYKTCIIYGDKVMW
VNRELYDFINGYIEFIRPLIAPADSKLLFTSSSKRAEVQQNEEEEEKDPG
LMEHPMISSAFSRSFQKAGVFQSSDNTRVPRPASVALHARSLLAWTAKTA
TM Run BLAST on NCBI transcript from alignment at scaffold_502:87490..88962+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069524 ID=TCONS_00069524|Name=TCONS_00069524|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at scaffold_502:87490..88962+ (Clytia hemisphaerica)
CAATGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGGGGATATCG
CCAAAGCGGCCCCAACAACACCTGAAGACGGTTTTTGTGGCTTTGAATTC
AAGTCCTCCAAGTACAAGACATGTATCATTTACGGAGATAAAGTGATGTG
GGTCAACAGAGAATTATATGATTTTATTAACGGCTACATTGAATTCATCC
GTCCCCTGATCGCCCCAGCAGACTCCAAGCTCTTATTTACAAGCTCCTCG
AAGAGAGCCGAGGTAcaacaaaatgaagaagaagaagaaaaggatccTGG
GCTCATGGAACATCCCATGATTTCATCTGCCTTCAGTCGTTCGTTCCAGA
AAGCCGGTGTATTCCAATCAAGTGACAATACCAGAGTTCCCCGTCCCGCC
TCCGTTGCGCTGCATGCACGGAGCTTGTTGGCGTGGACGGCGAAAACAGC
GACAATGTAGCTCTGCATTATATGAAGCACAGGTATAAATTCAATTTCCG
TTTGCAATACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGA
AGGGTGAATGATGTGTTCTAGTCTGAATTAAAATTCGGGATACGGTACAG
TCTGTGTTGATATCAATTCATAATTCtctatttatttttgattggcaggt
ttagatttttttaatcaatttgtCATTCATGTATTTTTTGCTTCTACAGA
CCCGGTACATCACACCAATACTATACAGCCTATTGGGAGAACAGGGAAGC
GTTGCGCATCTCGATGAAGTGTTACTCAAAGTTCCTGCCCGGCAAAGAAA
CGGAGAGAATCGTGGCCGATCGAAACAGAATGTTATCTCAACAGAAACCA
CCATCGAAAAATGATATGAAGAAATGGTTTAATAACTTGGCCAAGCTGAT
ACAGGGCTCCACCGGAAAGAAATACACCGACGACCGACTTATGGCATGCT
TTGATGACCTAGAAGATAAAAACGTTGATTGTGAGCTTTTATCGTTTAAT
CCCATTAAATTAATTAATATGAATTTACATGAACTTTTTTATACCTAGAG
CTGAACAGAATGATGTGCTCTAGTCTGAATTGAAATTCGGGATATGGTAC
AGTCTGTGTTGATATCAATTCATAATTCTCTATTTATTGTGTGATTTATg
atatgttttttttcaaatttttagttacAAAGTCTCTGGCTGGTCCATCT
GAAAAAGTACAAGAAACTGGTAAGCTATCTTTTGAATCAGATTATCATTA
ACATTTGATTATTCATACCAGGCGTAGGTGTCCGAGAATCCACCCAAAAC
GCATATTAATCTATGTCTGACTATGTCTGTCTAACCCTAACGAATTTACA
TGAACTCTTTGTGCTTGTCTGAATTACAATTCGGGATATGGTACAGTCTA
AGACAGATCCATTTAGGCATTCATTGCAGAGTTATTACTAATCGTTCGTG
CTGAAGGATTCCTCGTACTggaa Coding sequence (CDS) from alignment at scaffold_502:87490..88962+ >TCONS_00069524 ID=TCONS_00069524|Name=TCONS_00069524|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_502:87490..88962+ (Clytia hemisphaerica)
AATGGAGCTCGAGCCTCAAATCTTATGAATATTTCGTTGGGGGATATCGC
CAAAGCGGCCCCAACAACACCTGAAGACGGTTTTTGTGGCTTTGAATTCA
AGTCCTCCAAGTACAAGACATGTATCATTTACGGAGATAAAGTGATGTGG
GTCAACAGAGAATTATATGATTTTATTAACGGCTACATTGAATTCATCCG
TCCCCTGATCGCCCCAGCAGACTCCAAGCTCTTATTTACAAGCTCCTCGA
AGAGAGCCGAGGTAcaacaaaatgaagaagaagaagaaaaggatccTGGG
CTCATGGAACATCCCATGATTTCATCTGCCTTCAGTCGTTCGTTCCAGAA
AGCCGGTGTATTCCAATCAAGTGACAATACCAGAGTTCCCCGTCCCGCCT
CCGTTGCGCTGCATGCACGGAGCTTGTTGGCGTGGACGGCGAAAACAGCG
ACAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069524-exon-scaffold_502-1491911889:87490..87971 | TCONS_00069524-exon-scaffold_502-1491911889:87490..87971 | Clytia hemisphaerica | exon |
| TCONS_00069524-exon-scaffold_502-1510915933:87490..87971 | TCONS_00069524-exon-scaffold_502-1510915933:87490..87971 | Clytia hemisphaerica | exon |
| TCONS_00069524-exon-scaffold_502-1575043694:87490..87971 | TCONS_00069524-exon-scaffold_502-1575043694:87490..87971 | Clytia hemisphaerica | exon |
| TCONS_00069524-exon-scaffold_502-1491911889:88189..88962 | TCONS_00069524-exon-scaffold_502-1491911889:88189..88962 | Clytia hemisphaerica | exon |
| TCONS_00069524-exon-scaffold_502-1510915933:88189..88962 | TCONS_00069524-exon-scaffold_502-1510915933:88189..88962 | Clytia hemisphaerica | exon |
| TCONS_00069524-exon-scaffold_502-1575043694:88189..88962 | TCONS_00069524-exon-scaffold_502-1575043694:88189..88962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_502 | supercontig | scaffold_502:87490..88962 + |
Blast
The following BLAST results are available for this feature:
|
