TCONS_00069513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069513
Unique NameTCONS_00069513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069513 ID=TCONS_00069513|Name=TCONS_00069513|organism=Clytia hemisphaerica|type=transcript|length=344bp
cTGGTCACTCTACTAGACACGCTTCTACTTCCAAAGCTAAATTAGTTGGG
ATACCCTTAAAAGAAATTGTCAAGAGAGGTCGATGGTCGTCAGATTCTAT
GTTTAGGAACAGATACTGCCAGGAGGTTAAGGTTACGGAAAGGTCAAGGG
CATACGAAAATAAACTGTTTAAGAAAGCTTTGAACAAGGAGGGCTAGAAG
CGACGGCTTCTAGTTATGGATACGAGTATGTCGCTTAGCAGGATTAGATC
TAGCGAGATTTCACGCTGTGAAATTTGGAATTGTGcaagggcgcgaagcg
cccgcaGTACAATTCCGATTTTACTAGTGAAATCGAAGCTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_501:125947..126290

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069513 ID=TCONS_00069513|Name=TCONS_00069513|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at scaffold_501:125947..126290 (Clytia hemisphaerica)
CTTTAGCTTCGATTTCACTAGTAAAATCGGAATTGTACtgcgggcgcttc
gcgcccttgCACAATTCCAAATTTCACAGCGTGAAATCTCGCTAGATCTA
ATCCTGCTAAGCGACATACTCGTATCCATAACTAGAAGCCGTCGCTTCTA
GCCCTCCTTGTTCAAAGCTTTCTTAAACAGTTTATTTTCGTATGCCCTTG
ACCTTTCCGTAACCTTAACCTCCTGGCAGTATCTGTTCCTAAACATAGAA
TCTGACGACCATCGACCTCTCTTGACAATTTCTTTTAAGGGTATCCCAAC
TAATTTAGCTTTGGAAGTAGAAGCGTGTCTAGTAGAGTGACCAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043331XLOC_043331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069513-exon-scaffold_501-1491911889:125947..126290TCONS_00069513-exon-scaffold_501-1491911889:125947..126290Clytia hemisphaericaexon
TCONS_00069513-exon-scaffold_501-1510915933:125947..126290TCONS_00069513-exon-scaffold_501-1510915933:125947..126290Clytia hemisphaericaexon
TCONS_00069513-exon-scaffold_501-1575043694:125947..126290TCONS_00069513-exon-scaffold_501-1575043694:125947..126290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_501supercontigscaffold_501:125947..126290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178125	0.512537	0	0	0.527278	0.560098	0.337867	1.26523	0.221454	0.00916403	0.266249	0.175021	0.524334	0	0.149225	0.160141	0	0.588579	0	0	0	1.11541	0	0	0.846461	0.755446	1.08104	0	0.291684	0.556309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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