TCONS_00069487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069487
Unique NameTCONS_00069487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069487 ID=TCONS_00069487|Name=TCONS_00069487|organism=Clytia hemisphaerica|type=transcript|length=949bp
ACAAGATGAATACACCATTACCTCCAAAAGTATCAGGTAACAGCTGGCAA
ATTGAGAGTAATACACGGCTAGAGAAAAAAGTCACATGCTCGACTAGCAA
TTTCACAGACCACGAACCAATTCCATGTCGGAAGGGCTATATGTGTGATA
TACAACGACATGAGGATGAAAGGAATTCGATCCCAAATCGAGGCTTTTGC
ATCAAGAATCCCTTCAAAGaagTCGATCCGTTTAAGCCAATGGTAGTGTG
GGACGATGTAGACACAGGGTGCTATTATCGAGGTCGAAAGCTGAAGGATG
GAGAATATttcttcaataaatgtaatttctgCTTTTGCTCGAACACTATT
ATCAATTGTCAAACAGCACCTTGTCATTCAACCAAACGAACCAAGCTGTC
TCGATTACCCATCTCTTATAACGACGAGTCAATGAATTATATATAAATGA
GCGAGATTAAACTGACACATTTTTATTCTAATAAATTAGAAAAACGAAAA
TTGATGATGTCAGCAAAATGGAGTTAGTTATGGGAGTGAAATGGTATGAA
ATTTCAAAGCGAAAATGGTGTTCACCTTGCACCTTTATCACTGCGTTCCA
AAACTTTATGAAATTGAAATGAAGAACAGAACCTCCATAAGACGTGCACC
AAATTAAAACTCAGTAAGAAATATTCATCAAGAATGAATGAAAGAAGACA
ACGTTGGTGGTATTAACCATTACCATTCAATCAGAGAGAACAACATTGTG
TACTAATAGCAAGTTAACAATCTACCGTAGAGAAAGATCACGATAAAGAT
TGCATTTGTTCTGTGTTCCGAGGAGCTTTTGAATTTTGCTTGGaaatctg
aaaaagattGCCACTGTAAAAATGAgctattgaaaaatttttgtatttat
gtataaaaagaaattttttaaatctaagaAATCTGTAGTAAAATGATAT
Run BLAST on NCBI

protein sequence of TCONS_00069487-protein

>TCONS_00069487-protein ID=TCONS_00069487-protein|Name=TCONS_00069487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
KMNTPLPPKVSGNSWQIESNTRLEKKVTCSTSNFTDHEPIPCRKGYMCDI
QRHEDERNSIPNRGFCIKNPFKEVDPFKPMVVWDDVDTGCYYRGRKLKDG
EYFFNKCNFCFCSNTIINCQTAPCHSTKRTKLSRLPISYNDESMNYI
Run BLAST on NCBI

transcript from alignment at scaffold_500:146884..149448-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069487 ID=TCONS_00069487|Name=TCONS_00069487|organism=Clytia hemisphaerica|type=transcript|length=2565bp|location=Sequence derived from alignment at scaffold_500:146884..149448- (Clytia hemisphaerica)
ACAAGATGAATACACCATTACCTCCAAAAGTATCAGGTTCGTGATTTTCG
ACTTTATTGATTTATATCAAAATCACCTGGCCTGGAGCTTTTTCTAACTT
TTCTTAGATATCATCACATAATTTATAATACCAGGGGGAGTAGGGTATTC
GAATCTCTGAAGACCGAACCTTAGAGAGACTAATTTTTTTGTAAAAAAGT
TGTTACTCTTAGTCAGAGTTTCTCTGCGAAAAATTTCCTAAGAGATATTT
TTGAATTTTATGGTTTCAATACCCTTAATAACCGAAAAGGGGATAATCAT
CCCAACCCTTATAGGGACTATTGTTACTTTTTTGTAGTACAAAAACTTGG
CATGTCAAAAATCTGACTCTCATCGTCCACACATACCCAACATCTATTTT
ATTGTTTCCATGTACCCCCTACTCCCGTTTGTAAAATACAAGCTTACCTG
ATGAGAATAGTTACCCAATGTTCAAACACTACTCCTAATTAAATTTTCAC
GGACTTGGATTATCTGTTTGTATGAAAACATTTATTTTTCTACAGGTAAC
AGCTGGCAAATTGAGAGTAATACACGGCTAGAGAAAAAAGTCACATGCTC
GACTAGCAATTTCACAGACCACGAACCAATTCCATGTCGGAAGGGCTATA
TGTGTGATATACAACGACATGAGGATGAAAGGAATTCGATCCCAAATCGA
GGCTTTTGCATCAAGAATCCCTTCAAAGGTAAAGTATACTTCTGCATGAG
AATTATCAAATCATTATCAACATAACTCAAGATCACGATCAAGATCATAG
ACTCAGACACCAGAGCCTTAGGTCGGTCTTTAACTTTTTCTTTTGATTCA
CTCAACAAATACCATAAACACCACAGCTTAGCTTTCTCTGAAATTAAACT
GTGGAGACAAACTGCAAGACTTTTATCGCGCATGTCTGATAGAGAGCAAG
ATAGAGAGCACATACCACCATTAGCTAAAGTAGATCGATTCCTAAAACTA
TATAAAAATATGTGTGCTATGCGCCGAGATTATCCTCTTTCAATGAATCT
TTTTTACGTTTCTTATTGTGATTGTTTGGTACGACTTTCATCCAAGATCT
TGGATGATTGCCATGGTTAAGTTTGTTCTCCCTGAGTGCATGTTGAATGA
AATCGCAGTTTCTCTTCACAGGATGATGTATGTGATATTTTCATGTTTCT
TTCTTTCTTTTTCAGAAGTCGATCCGTTTAAGCCAATGGTAGTGTGGGAC
GATGTAGACACAGGTACGTTGTCCGTCATTCTCATAGAATACCAAACCTC
CGCTGATATTCTACATTTTGCCTCCGGAACTAGTATTACTCTCGACAATG
CTAAGCTTTACCAACGTGTAAAAGAAGGAATTTCTAATTCAGAGTAGGCC
CAGAAAAGGCCCTATATCATCAACCACTTTGAATTCTCGAACATCTCAAC
AAGAACTTCCTTTCATCAGAATATCTTCTTTTATTCTTAGGGTGCTATTA
TCGAGGTCGAAAGCTGAAGGATGGAGAATATTTCTTCAATAAATGTAATT
TCTGGTAAGTTTTTTTTTAACTTTTCTTTATTGTCCACGTTCATACTTTC
ATTTGAGAATCAAGAATCTTTCCCTGGTCTTATACAATTCATGAAATCGC
CACCTGTTTACGTGTGGCGTGATTGGGGCTTTATTTTGCGTGGAGGCGTG
ATTCCATAATTTTCCGGCGCGATGTGTGATAGGGCAAGAGTTTGATGCGT
GATTTGGCTATTTTTAGCAATTTTTTTGCACGATCGTGATGAGACCAAAA
TTTGGCGTGATGACTCTCACCCCGCTGACAGGACCTCATTTTGTTCGCAG
AGATAATTTTAGTAGATGAATTTCATGCATGGGGAATGTGATAGGGCGCC
TTAAGTATAAACTTCTAAGCTATATTTCCGCTTGATTTTTATTTCAGCTT
TTGCTCGAACACTATTATCAATTGTCAAACAGCACCTTGTCATTCAACCA
AACGAACCAAGCTGTCTCGATTACCCATCTCTTATAACGACGAGTCAATG
AATTATATATAAATGAGCGAGATTAAACTGACACATTTTTATTCTAATAA
ATTAGAAAAACGAAAATTGATGATGTCAGCAAAATGGAGTTAGTTATGGG
AGTGAAATGGTATGAAATTTCAAAGCGAAAATGGTGTTCACCTTGCACCT
TTATCACTGCGTTCCAAAACTTTATGAAATTGAAATGAAGAACAGAACCT
CCATAAGACGTGCACCAAATTAAAACTCAGTAAGAAATATTCATCAAGAA
TGAATGAAAGAAGACAACGTTGGTGGTATTAACCATTACCATTCAATCAG
AGAGAACAACATTGTGTACTAATAGCAAGTTAACAATCTACCGTAGAGAA
AGATCACGATAAAGATTGCATTTGTTCTGTGTTCCGAGGAGCTTTTGAAT
TTTGCTTGGAAATCTGAAAAAGATTGCCACTGTAAAAATGAGCTATTGAA
AAATTTTTGTATTTATGTATAAAAAGAAATTTTTTAAATCTAAGAAATCT
GTAGTAAAATGATAT

Coding sequence (CDS) from alignment at scaffold_500:146884..149448-

>TCONS_00069487 ID=TCONS_00069487|Name=TCONS_00069487|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_500:146884..149448- (Clytia hemisphaerica)
CTTTTGCTCGAACACTATTATCAATTGTCAAACAGCACCTTGTCATTCAA
CCAAACGAACCAAGCTGTCTCGATTACCCATCTCTTATAACGACGAGTCA
ATGAATTATATATAAGGTGCTATTATCGAGGTCGAAAGCTGAAGGATGGA
GAATATTTCTTCAATAAATGTAATTTCTGAAGTCGATCCGTTTAAGCCAA
TGGTAGTGTGGGACGATGTAGACACAGGTAACAGCTGGCAAATTGAGAGT
AATACACGGCTAGAGAAAAAAGTCACATGCTCGACTAGCAATTTCACAGA
CCACGAACCAATTCCATGTCGGAAGGGCTATATGTGTGATATACAACGAC
ATGAGGATGAAAGGAATTCGATCCCAAATCGAGGCTTTTGCATCAAGAAT
CCCTTCAAAGAAGATGAATACACCATTACCTCCAAAAGTATCAGCTTTTG
CTCGAACACTATTATCAATTGTCAAACAGCACCTTGTCATTCAACCAAAC
GAACCAAGCTGTCTCGATTACCCATCTCTTATAACGACGAGTCAATGAAT
TATATATAAGGTGCTATTATCGAGGTCGAAAGCTGAAGGATGGAGAATAT
TTCTTCAATAAATGTAATTTCTGAAGTCGATCCGTTTAAGCCAATGGTAG
TGTGGGACGATGTAGACACAGGTAACAGCTGGCAAATTGAGAGTAATACA
CGGCTAGAGAAAAAAGTCACATGCTCGACTAGCAATTTCACAGACCACGA
ACCAATTCCATGTCGGAAGGGCTATATGTGTGATATACAACGACATGAGG
ATGAAAGGAATTCGATCCCAAATCGAGGCTTTTGCATCAAGAATCCCTTC
AAAGAAGATGAATACACCATTACCTCCAAAAGTATCAGCTTTTGCTCGAA
CACTATTATCAATTGTCAAACAGCACCTTGTCATTCAACCAAACGAACCA
AGCTGTCTCGATTACCCATCTCTTATAACGACGAGTCAATGAATTATATA
TAAGGTGCTATTATCGAGGTCGAAAGCTGAAGGATGGAGAATATTTCTTC
AATAAATGTAATTTCTGAAGTCGATCCGTTTAAGCCAATGGTAGTGTGGG
ACGATGTAGACACAGGTAACAGCTGGCAAATTGAGAGTAATACACGGCTA
GAGAAAAAAGTCACATGCTCGACTAGCAATTTCACAGACCACGAACCAAT
TCCATGTCGGAAGGGCTATATGTGTGATATACAACGACATGAGGATGAAA
GGAATTCGATCCCAAATCGAGGCTTTTGCATCAAGAATCCCTTCAAAGAA
GATGAATACACCATTACCTCCAAAAGTATCAGCTTTTGCTCGAACACTAT
TATCAATTGTCAAACAGCACCTTGTCATTCAACCAAACGAACCAAGCTGT
CTCGATTACCCATCTCTTATAACGACGAGTCAATGAATTATATATAAGGT
GCTATTATCGAGGTCGAAAGCTGAAGGATGGAGAATATTTCTTCAATAAA
TGTAATTTCTGAAGTCGATCCGTTTAAGCCAATGGTAGTGTGGGACGATG
TAGACACAGGTAACAGCTGGCAAATTGAGAGTAATACACGGCTAGAGAAA
AAAGTCACATGCTCGACTAGCAATTTCACAGACCACGAACCAATTCCATG
TCGGAAGGGCTATATGTGTGATATACAACGACATGAGGATGAAAGGAATT
CGATCCCAAATCGAGGCTTTTGCATCAAGAATCCCTTCAAAGAAGATGAA
TACACCATTACCTCCAAAAGTATCAGCTTTTGCTCGAACACTATTATCAA
TTGTCAAACAGCACCTTGTCATTCAACCAAACGAACCAAGCTGTCTCGAT
TACCCATCTCTTATAACGACGAGTCAATGAATTATATATAAGGTGCTATT
ATCGAGGTCGAAAGCTGAAGGATGGAGAATATTTCTTCAATAAATGTAAT
TTCTGAAGTCGATCCGTTTAAGCCAATGGTAGTGTGGGACGATGTAGACA
CAGGTAACAGCTGGCAAATTGAGAGTAATACACGGCTAGAGAAAAAAGTC
ACATGCTCGACTAGCAATTTCACAGACCACGAACCAATTCCATGTCGGAA
GGGCTATATGTGTGATATACAACGACATGAGGATGAAAGGAATTCGATCC
CAAATCGAGGCTTTTGCATCAAGAATCCCTTCAAAGAAGATGAATACACC
ATTACCTCCAAAAGTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043310XLOC_043310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069487-exon-scaffold_500-1575043694:149413..149448TCONS_00069487-exon-scaffold_500-1575043694:149413..149448Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1575043694:148721..148903TCONS_00069487-exon-scaffold_500-1575043694:148721..148903Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1575043694:148186..148233TCONS_00069487-exon-scaffold_500-1575043694:148186..148233Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1575043694:147895..147958TCONS_00069487-exon-scaffold_500-1575043694:147895..147958Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1575043694:146884..147501TCONS_00069487-exon-scaffold_500-1575043694:146884..147501Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1510915933:149413..149448TCONS_00069487-exon-scaffold_500-1510915933:149413..149448Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1510915933:148721..148903TCONS_00069487-exon-scaffold_500-1510915933:148721..148903Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1510915933:148186..148233TCONS_00069487-exon-scaffold_500-1510915933:148186..148233Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1510915933:147895..147958TCONS_00069487-exon-scaffold_500-1510915933:147895..147958Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1510915933:146884..147501TCONS_00069487-exon-scaffold_500-1510915933:146884..147501Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1491911889:149413..149448TCONS_00069487-exon-scaffold_500-1491911889:149413..149448Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1491911889:148721..148903TCONS_00069487-exon-scaffold_500-1491911889:148721..148903Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1491911889:148186..148233TCONS_00069487-exon-scaffold_500-1491911889:148186..148233Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1491911889:147895..147958TCONS_00069487-exon-scaffold_500-1491911889:147895..147958Clytia hemisphaericaexon
TCONS_00069487-exon-scaffold_500-1491911889:146884..147501TCONS_00069487-exon-scaffold_500-1491911889:146884..147501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069487-proteinTCONS_00069487-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:146884..149448 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91449	1.69004	0.705684	0.354052	4.23076	2.04361	7.67011	9.06181	5.82412	5.10229	4.54601	5.05526	11.6537	8.02341	6.80788	9.57444	1.69761	4.85359	10.4467	10.5018	10.3686	8.88195	4.06873	6.12464	9.08266	11.6658	4.37887	5.50115	2.86309	3.78089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top