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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069486 ID=TCONS_00069486|Name=TCONS_00069486|organism=Clytia hemisphaerica|type=transcript|length=420bp
gattaaaagttggaaaacaTCTTTCTCCAAGAAGAATACACGAAGACCTG
CACAAGAGATTAAAAGAACACATATCTAATATTGAAGAAGTGACCCTTGG
AAGGGAAGTACACGGTCCAGCAATAACATTGTCGTTTCAAAAAAAAGGAG
CTCACACAATTGACATTGATTTGTCACCATCCTTattcacaaaagaattg
aaagttGACAGTGAAGTTTGGGGaagaagatttttccaaaagaattcTGT
TGTTTTAGCAACCGTTCGAAATGAACCTTTTCTACTGGTCCCAAAGGAAG
AAAATTGCTGGCTGATTTCTTAtgagaaaatcatgaaaaaaatgttcaat
ATGATTGATAGCTCCGAAACCTGTCGCAAGATTTGTCATAAGAttctgaa
aatgacgtcatgaaatGGAA Run BLAST on NCBI protein sequence of TCONS_00069486-protein >TCONS_00069486-protein ID=TCONS_00069486-protein|Name=TCONS_00069486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
LKVGKHLSPRRIHEDLHKRLKEHISNIEEVTLGREVHGPAITLSFQKKGA
HTIDIDLSPSLFTKELKVDSEVWGRRFFQKNSVVLATVRNEPFLLVPKEE
NCWLISYEKIMKKMFNMIDSSETCRKICHKILKMTS Run BLAST on NCBI transcript from alignment at scaffold_500:138451..140332- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069486 ID=TCONS_00069486|Name=TCONS_00069486|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_500:138451..140332- (Clytia hemisphaerica)
GATTAAAAGTTGGAAAACATCTTTCTCCAAGAAGAATACACGAAGACCTG
CACAAGAGATTAAAAGAACACATATCTAATATTGAAGGTAGGAAGGGATT
TTTTTGATTGAGATAATCTTTGATTGATTGAGAACCGGAGGGAACTCAAT
TTAAAAATGGTGCTATACGCATATGTGTATCATAGATACTGTATCTTATA
TAAAACACTAGATAGTGTCTTCCTACCTTATTTGAAGCAAAATAATTCGC
CATCTTGAATGAAGTGACTTCACAATTTTGTTTGCGAGTATCCTTGAAAT
TTGCAGCGTCAAAAAGTTTCAACAGTGAAATCCAATGTTTCTACTGTGAC
CTACTGTGGTCTACTTTCAGCTAAGATCATGGCGCATTATTTTGCTTCAC
CTGCCGTTGCAGTGTTTTATATAAGATAGATGTGATGTGTGATGTGTAAA
TTTGGGCGATAATTAGACCTAAACGGGGACCAAACGGTGCATTTAGTTGA
GATCTTTTTGTCCATTATAAGGCATAAAATGGTCAGATTTTCCAAAATTA
TGTTTTTCTCACTTTTTACATCCTTAGAGTTTACGCACTCTAAAGAACGC
ACCTATGGTCGCTTACCTTTAGTAAGGGATAACATCAAAAGGCATACATA
TTGTTTCGGAGACTGGTAGAAATTTGAAAAAACAATTTTTGTAAATAATA
ACATTCAGTCTATGGATTCACCATGAATTTAATATAGAGACTCTGGATAA
ACATCGAATGAAGAATCCACCCAACCTGCTGAGAAATTTGTAAAAAAGTA
AAGTGTCCAAATACTTTTGAGATAGACTTTTTTAATTATTAATTTCGCCT
AAGTAATTACTCTTGTCTCCCGAATAGACGTCCCCCCGCTCTTATCAAGA
TCTCGGGTAACTTAATGCATGTCCCGCAGAATTGCAATAATTTTTCCGCC
CCAGTTCCAGTTCCTAAACCATAACAAACTATACATTTTTAGAAGCGTAT
TTGGATGTAGAATACCGTATTCACACCGAACTTAAATTTTTTCTCAGTAT
AATTAGAGATTTCTTAAGAAAACCTGACTATGACGTCATGATTGATGACG
TCATAAATACAAAAAGTGGAACATCTTGAGAAATATCAATCAAAACTTTA
TGAAATTTGGACCAGTGATAAAGTACATTGAGATGTTTCAAAATTTCGTT
GTTCTTAAATTGGTCTTATTTTTTAGCGATTTTGAGCCTCGCTGTTCTTA
TAAAATTGTTCTTGTAAAAGAAAAAAGTGTATGGGTTGCATTTCTTTAAA
GTGAGATATATTGTCTGTGTTCCTTTTCATCAAAAGGCTCGATGTAACGT
AGATTTTAGATTAGCTTCCATCTCTACCTTTTGTTTTTCCCGCATTTTTT
TAAATTTTAGGCGAAATTTTCGACTTAAAGTCTTGTTTGGTGAATATTTT
GGCTGGATGAAAAACTGGGCCAGCAAAAGTTTTCCTCAACTAAAATATAG
CAAAAATCATTACCTTTACAGTGATAAAAGTTCGCATTTGATTTTTCAGA
AGTGACCCTTGGAAGGGAAGTACACGGTCCAGCAATAACATTGTCGTTTC
AAAAAAAAGGAGCTCACACAATTGACATTGATTTGTCACCATCCTTATTC
ACAAAAGAATTGAAAGTTGACAGTGAAGTTTGGGGAAGAAGATTTTTCCA
AAAGAATTCTGTTGTTTTAGCAACCGTTCGAAATGAACCTTTTCTACTGG
TCCCAAAGGAAGAAAATTGCTGGCTGATTTCTTATGAGAAAATCATGAAA
AAAATGTTCAATATGATTGATAGCTCCGAAACCTGTCGCAAGATTTGTCA
TAAGATTCTGAAAATGACGTCATGAAATGGAA Coding sequence (CDS) from alignment at scaffold_500:138451..140332- >TCONS_00069486 ID=TCONS_00069486|Name=TCONS_00069486|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_500:138451..140332- (Clytia hemisphaerica)
AAGTGACCCTTGGAAGGGAAGTACACGGTCCAGCAATAACATTGTCGTTT
CAAAAAAAAGGAGCTCACACAATTGACATTGATTTGTCACCATCCTTATT
CACAAAAGAATTGAAAGTTGACAGTGAAGTTTGGGGAAGAAGATTTTTCC
AAAAGAATTCTGTTGTTTTAGCAACCGTTCGAAATGAACCTTTTCTACTG
GTCCCAAAGGAAGAAAATTGCTGGCTGATTTCTTATGAGAAAATCATGAA
AAAAATGTTCAATATGATTGATAGCTCCGAAACCTGTCGCAAGATTTGTC
ATAAGATTCTGAAAATGACGTCATGATTAAAAGTTGGAAAACATCTTTCT
CCAAGAAGAATACACGAAGACCTGCACAAGAGATTAAAAGAACACATATC
TAATATTGAAGAAGTGACCCTTGGAAGGGAAGTACACGGTCCAGCAATAA
CATTGTCGTTTCAAAAAAAAGGAGCTCACACAATTGACATTGATTTGTCA
CCATCCTTATTCACAAAAGAATTGAAAGTTGACAGTGAAGTTTGGGGAAG
AAGATTTTTCCAAAAGAATTCTGTTGTTTTAGCAACCGTTCGAAATGAAC
CTTTTCTACTGGTCCCAAAGGAAGAAAATTGCTGGCTGATTTCTTATGAG
AAAATCATGAAAAAAATGTTCAATATGATTGATAGCTCCGAAACCTGTCG
CAAGATTTGTCATAAGATTCTGAAAATGACGTCATGATTAAAAGTTGGAA
AACATCTTTCTCCAAGAAGAATACACGAAGACCTGCACAAGAGATTAAAA
GAACACATATCTAATATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069486-exon-scaffold_500-1575043694:140246..140332 | TCONS_00069486-exon-scaffold_500-1575043694:140246..140332 | Clytia hemisphaerica | exon |
| TCONS_00069486-exon-scaffold_500-1575043694:138451..138783 | TCONS_00069486-exon-scaffold_500-1575043694:138451..138783 | Clytia hemisphaerica | exon |
| TCONS_00069486-exon-scaffold_500-1510915933:140246..140332 | TCONS_00069486-exon-scaffold_500-1510915933:140246..140332 | Clytia hemisphaerica | exon |
| TCONS_00069486-exon-scaffold_500-1510915933:138451..138783 | TCONS_00069486-exon-scaffold_500-1510915933:138451..138783 | Clytia hemisphaerica | exon |
| TCONS_00069486-exon-scaffold_500-1491911889:140246..140332 | TCONS_00069486-exon-scaffold_500-1491911889:140246..140332 | Clytia hemisphaerica | exon |
| TCONS_00069486-exon-scaffold_500-1491911889:138451..138783 | TCONS_00069486-exon-scaffold_500-1491911889:138451..138783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:138451..140332 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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