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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069479 ID=TCONS_00069479|Name=TCONS_00069479|organism=Clytia hemisphaerica|type=transcript|length=1105bp
TGACGATATTTTGTTACCTTGATTTAAATTGATAAAATTGTTCAAGCTTT
TTAAGATGCTGGATTTTAGAAGATCAGACCATTACTCCAGTGACAACATC
CCAGCTTCTGAGAAACCACGATGGCCGGTCGCCGGAAAGAAACGTGGACG
GCCAAGCTGTAAAGGGGCCGACGCCAAAGAATGGATGGATATTGAAATCT
TCAAACTTGTCGAACTATGggaaaagaaagatattttatACAACACGAAG
CACCTTATGTATTACAATAAAGAGGAGAGGGATAACGCCGTGAAATATAT
CCAAAAAGCACTGAGTGAAAATGACATGCATGCTACTATAGAACAAATTA
CAGATAAAATGACTAATTTGAAATGTTATTACGGAAGTCAGAAACGTAAC
ATGGAGAACATGAAACTAAACGGCGGCGACGGGAACTACATCAGTCCTTG
GAAGTTCTTCAACCATTTACAATTCTTAAACGGCCATTTCTTGCAACGTA
CTCCGACAACACGCCGACGTTACATCGTCAACCATCATCAACATGACGGA
CCTGTCAATTACAAACTGACCAATGGGACGAACGGGAAACCCATGGTTAA
AAAAGAGGGTCACCTCCACCAGTTTCCTTATGAATCTACACCAAACCCTG
CTAAAATCACTATGGTGGACCCATACATTATACACCAACCGAAAGCTTCT
ATGGTCGACCCTTACGCTAAACCGTATCCTGACTCGCCCACTGTTACCAT
CAAACCTTACAAAGGTCATGACAGTGGATACTGGGACGAGCCCCCTCATA
AAGTCATCGGTCGCTCCTCACCACCCTACACTAATGGGGTAGCAGATAGG
AAAAAAGCTGGCACCCCACCCCATGCACCAGGATCAAGGCCCTCATCTAC
CGGCTCACCGAGAAGCGAAAGTAACAGccctaaaatgaaattgaaatctG
AAGATGACTGCTTTTCAGAACTTATTTGCAAAATGTTAAATCAAATACCT
GAATCGGAGGAAAAAGCAATGTTAAGACTTGAAATGCAACAAAAAGTGAT
TGCATTACGTTACAGATCATAGATTGGATGTGATATCTTATGTTAGTAGG
TGATT Run BLAST on NCBI transcript from alignment at scaffold_500:77451..78924+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069479 ID=TCONS_00069479|Name=TCONS_00069479|organism=Clytia hemisphaerica|type=transcript|length=1474bp|location=Sequence derived from alignment at scaffold_500:77451..78924+ (Clytia hemisphaerica)
TGACGATATTTTGTTACCTTGATTTAAATTGATAAAATTGTTCAAGCTTT
TTAAGATGCTGGATTTTAGAAGGTACAGTAATAATAGAGAATATGCTAAT
TCATATCGTTATCAAGCACTCCAAATCGTGTTTAGATTAGTTCAGCCTTG
GAAGGAACAGAGAAGGAGATGAGAAATCTTGCGCCCCTCAAGAACTGGGG
GTTAATTACTTAAAGTGGGCAAAAAGGCGATTTACTTCAGATTTTAATCT
TTTAAGAATGTTGAAGAGCAATTTCACGTTTCAcctttttagcctaaaaa
ttaaaaaaatttgggtgttttagagtccataaagccttaacaGTTCTTAT
ATTGTTCTCACATTCTGGCCATCGAAAACCTTTTTTCCTACATAGTTTGT
TCTCCCTTTCAATGaaaacttcttcttttttcaacctTTAGATCAGACCA
TTACTCCAGTGACAACATCCCAGCTTCTGAGAAACCACGATGGCCGGTCG
CCGGAAAGAAACGTGGACGGCCAAGCTGTAAAGGGGCCGACGCCAAAGAA
TGGATGGATATTGAAATCTTCAAACTTGTCGAACTATGggaaaagaaaga
tattttatACAACACGAAGCACCTTATGTATTACAATAAAGAGGAGAGGG
ATAACGCCGTGAAATATATCCAAAAAGCACTGAGTGAAAATGACATGCAT
GCTACTATAGAACAAATTACAGATAAAATGACTAATTTGAAATGTTATTA
CGGAAGTCAGAAACGTAACATGGAGAACATGAAACTAAACGGCGGCGACG
GGAACTACATCAGTCCTTGGAAGTTCTTCAACCATTTACAATTCTTAAAC
GGCCATTTCTTGCAACGTACTCCGACAACACGCCGACGTTACATCGTCAA
CCATCATCAACATGACGGACCTGTCAATTACAAACTGACCAATGGGACGA
ACGGGAAACCCATGGTTAAAAAAGAGGGTCACCTCCACCAGTTTCCTTAT
GAATCTACACCAAACCCTGCTAAAATCACTATGGTGGACCCATACATTAT
ACACCAACCGAAAGCTTCTATGGTCGACCCTTACGCTAAACCGTATCCTG
ACTCGCCCACTGTTACCATCAAACCTTACAAAGGTCATGACAGTGGATAC
TGGGACGAGCCCCCTCATAAAGTCATCGGTCGCTCCTCACCACCCTACAC
TAATGGGGTAGCAGATAGGAAAAAAGCTGGCACCCCACCCCATGCACCAG
GATCAAGGCCCTCATCTACCGGCTCACCGAGAAGCGAAAGTAACAGccct
aaaatgaaattgaaatctGAAGATGACTGCTTTTCAGAACTTATTTGCAA
AATGTTAAATCAAATACCTGAATCGGAGGAAAAAGCAATGTTAAGACTTG
AAATGCAACAAAAAGTGATTGCATTACGTTACAGATCATAGATTGGATGT
GATATCTTATGTTAGTAGGTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069479-exon-scaffold_500-1491911889:77451..77522 | TCONS_00069479-exon-scaffold_500-1491911889:77451..77522 | Clytia hemisphaerica | exon |
| TCONS_00069479-exon-scaffold_500-1510915933:77451..77522 | TCONS_00069479-exon-scaffold_500-1510915933:77451..77522 | Clytia hemisphaerica | exon |
| TCONS_00069479-exon-scaffold_500-1575043694:77451..77522 | TCONS_00069479-exon-scaffold_500-1575043694:77451..77522 | Clytia hemisphaerica | exon |
| TCONS_00069479-exon-scaffold_500-1491911889:77892..78924 | TCONS_00069479-exon-scaffold_500-1491911889:77892..78924 | Clytia hemisphaerica | exon |
| TCONS_00069479-exon-scaffold_500-1510915933:77892..78924 | TCONS_00069479-exon-scaffold_500-1510915933:77892..78924 | Clytia hemisphaerica | exon |
| TCONS_00069479-exon-scaffold_500-1575043694:77892..78924 | TCONS_00069479-exon-scaffold_500-1575043694:77892..78924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:77451..78924 + |
Blast
The following BLAST results are available for this feature:
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