TCONS_00069477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069477
Unique NameTCONS_00069477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069477 ID=TCONS_00069477|Name=TCONS_00069477|organism=Clytia hemisphaerica|type=transcript|length=545bp
AAATAATGCGTGACAACAAAAAAGCCTAACGCCCGGCTTAAAAGATTTTC
ACTGAACCAATCTCATGCATCATGTCTCAAACTTTTTGTCAATCgtgcat
cacgccaaaatcgtTATCACTTTACCACTTTACCACTAAGAAAAGTTCGA
GTTTCACGTCATGCCACAAGGAAAAAGCCCCATACCGTACTTATTATGCA
AATCACTTGAGGCCTCTTTGCTCTTCCTCCAATCATAAATCAATGTTCTA
TTATTTACAGTAATCATTCTCATCTTCCATTTTACGTGTCATGTTTGAAT
CAACTGTCAATATGACGGAAACCTTCATTGGAATAAAGCTGGAAAGTCCC
AACCCATGTTGCGTGAAAAATCTCTCAGAATGCTGATAGTCAACAGCCTA
TTGGAGACGGTGAGAAATTTCGCAAGAAAAAGAACGAGGAAGAATGGAAA
ACACAAAAAGAGTTCGAAAATGAAGTGTTGAAAAGTTGCGACCACGATGA
TCCGTCATCCTTTGTTGAGTACTTTAGAGGTATGTTTTTGATAAC
Run BLAST on NCBI

transcript from alignment at scaffold_500:7949..8740+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069477 ID=TCONS_00069477|Name=TCONS_00069477|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at scaffold_500:7949..8740+ (Clytia hemisphaerica)
AAATAATGCGTGACAACAAAAAAGCCTAACGCCCGGCTTAAAAGATTTTC
ACTGAACCAATCTCATGCATCATGTCTCAAACTTTTTGTCAATCgtgcat
cacgccaaaatcgtTATCACTTTACCACTTTACCACTAAGAAAAGTTCGA
GTTTCACGTCATGCCACAAGGAAAAAGCCCCATACCGTACTTATTATGCA
AATCACTTGAGGCCTCTTTGCTCTTCCTCCAATCATAAATCAATGTTCTA
TTATTTACAGTAATCATTCTCATCTTCCATTTTACGTGTCATGTTTGAAT
CAACTGTCAATATGACGGAAACCTTCATTGGAATAAAGCTGGAAAGTCCC
AACCCATGTTGCGTGAAAAATCTCTCAGGTAGGCTTTTAAAGTAGAATCc
ctttaatcaattttttttttcatttttgaatttaCGTATACGagacgatt
tcaaaaaatgaaatatctctcataataatgattttgactcggtgaaaatg
cttcaaaaaggCCCGAAaagtgttatttttcaaatttttgggcaTTTCTC
GATTATTGAAGCTTTGATTTACCCATACTTATCCAAGGatattaaaatgt
ttaaaaCCTACCTTTTCTTTTTAAGAATGCTGATAGTCAACAGCCTATTG
GAGACGGTGAGAAATTTCGCAAGAAAAAGAACGAGGAAGAATGGAAAACA
CAAAAAGAGTTCGAAAATGAAGTGTTGAAAAGTTGCGACCACGATGATCC
GTCATCCTTTGTTGAGTACTTTAGAGGTATGTTTTTGATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043302XLOC_043302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069477-exon-scaffold_500-1491911889:7949..8326TCONS_00069477-exon-scaffold_500-1491911889:7949..8326Clytia hemisphaericaexon
TCONS_00069477-exon-scaffold_500-1510915933:7949..8326TCONS_00069477-exon-scaffold_500-1510915933:7949..8326Clytia hemisphaericaexon
TCONS_00069477-exon-scaffold_500-1575043694:7949..8326TCONS_00069477-exon-scaffold_500-1575043694:7949..8326Clytia hemisphaericaexon
TCONS_00069477-exon-scaffold_500-1491911889:8574..8740TCONS_00069477-exon-scaffold_500-1491911889:8574..8740Clytia hemisphaericaexon
TCONS_00069477-exon-scaffold_500-1510915933:8574..8740TCONS_00069477-exon-scaffold_500-1510915933:8574..8740Clytia hemisphaericaexon
TCONS_00069477-exon-scaffold_500-1575043694:8574..8740TCONS_00069477-exon-scaffold_500-1575043694:8574..8740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_500supercontigscaffold_500:7949..8740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105589	0.205931	0	0	0	0	0.135751	0.508353	0.35591	0	0	0.140643	0.0702236	0.0729279	0.239827	0.128685	0.0792649	0.081244	0.336729	0.234908	0.306267	0.298773	0.363197	0	0.79356	1.21411	0.144783	0	0.46878	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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