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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069470 ID=TCONS_00069470|Name=TCONS_00069470|organism=Clytia hemisphaerica|type=transcript|length=566bp
GAAGTGAGTTAAGAGCCTCTTTAAATTGCTAAATATACGGGCCTATTTTA
TGAGACTTGAAATTGACTTTCTTGACGTTTAGGCAGTCTGTTTACCTGGA
ACTTTTTATCATTGTGGTATTGGTACTGCTCTCCTTCCTTTGTTCAATGC
GAGAAGTCTATCTCCAGCAAACAGAAATTGAAAGGCTTGTTGGAGATATT
TCCTCAACAATGGCTACTAGCTTCAATGCTAATGAATGGTCTGCAAATGA
TCAGTATCCTGACTTGACATTGCCAGAGTTGAATTCTGTTTCATTGGTTT
GGACCATTAGAGATAGTAGACTTGTAAATTTGCCCTTCAACTTGTTGGTG
GAAGGTGATGTTGTGCTCCTTGGACCAAGTAGGAAATCTCCTGCCACCTG
TAGACAAATTTGTACTAGGGACGGTGCACAGCCAGTGTTATTAGAATCTG
GAGATGTTTTTATGCCCAAATTACAAAGCCCTGCTCAACAAAAAACAGTA
CTGACAATGCATGGACGAGAATTATTCGAAGTTGTGGAGGCTcccttgaa
aaatatattgatgTAA Run BLAST on NCBI protein sequence of TCONS_00069470-protein >TCONS_00069470-protein ID=TCONS_00069470-protein|Name=TCONS_00069470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MREVYLQQTEIERLVGDISSTMATSFNANEWSANDQYPDLTLPELNSVSL
VWTIRDSRLVNLPFNLLVEGDVVLLGPSRKSPATCRQICTRDGAQPVLLE
SGDVFMPKLQSPAQQKTVLTMHGRELFEVVEAPLKNILM Run BLAST on NCBI transcript from alignment at scaffold_50:262336..263220- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069470 ID=TCONS_00069470|Name=TCONS_00069470|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at scaffold_50:262336..263220- (Clytia hemisphaerica)
GAAGTGAGTTAAGAGCCTCTTTAAATTGCTAAATATACGGGCCTATTTTA
TGAGACTTGAAATTGACTTTCTTGACGTTTAGGCAGTCTGTTTACCTGGA
ACTTTTTATCATTGTGGTATTGGTACTGCTCTCCTTCCTTTGTTCAATGC
GAGAAGTCTATCTCCAGCAAACAGAAATTGAAAGGCTTGTTGGAGATATT
TCCTCAACAATGGCTACTAGTAAGAACTTTTTCCTTTAATAAAGACAGGT
TTTTGTAGCATACGTTAAATTGACTCAGGAGATTTTCCCTCTGAATTCTC
TAAGATGTTGTTGTCCAAAAACATTGTCTACATTATAACTTTCTTCCTAT
TCACCAGGCTTCAATGCTAATGAATGGTCTGCAAATGATCAGTATCCTGA
CTTGACATTGCCAGAGTTGAATTCTGTTTCATTGGTTTGGACCATTAGAG
ATAGTAGACTTGTAAATTTGCCCTTCAACTTGTTGGTGGAAGGTGATGTT
GTGCTCCTTGGACCAAGTAGGAAATCTCCTGCCACCTGTAGACAAGTAAG
CTGCTTTAATAATTTAGACTTATGGTTATTGAAGAAACAATCATCATATC
CTGCGTCGCTATGAGTACAGCATTACGTAGAGTGTAGTAATTGTAAGTTT
TAAAATTCTCTGTTTCTCAATATCTAACTTACATACTATGATCTGTATAT
TATGTCTTCTCTTCTTCCTATTTCAGATTTGTACTAGGGACGGTGCACAG
CCAGTGTTATTAGAATCTGGAGATGTTTTTATGCCCAAATTACAAAGCCC
TGCTCAACAAAAAACAGTACTGACAATGCATGGACGAGAATTATTCGAAG
TTGTGGAGGCTCCCTTGAAAAATATATTGATGTAA Coding sequence (CDS) from alignment at scaffold_50:262336..263220- >TCONS_00069470 ID=TCONS_00069470|Name=TCONS_00069470|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_50:262336..263220- (Clytia hemisphaerica)
ATTTGTACTAGGGACGGTGCACAGCCAGTGTTATTAGAATCTGGAGATGT
TTTTATGCCCAAATTACAAAGCCCTGCTCAACAAAAAACAGTACTGACAA
TGCATGGACGAGAATTATTCGAAGTTGTGGAGGCTCCCTTGAAAAATATA
TTGATGTAAGCTTCAATGCTAATGAATGGTCTGCAAATGATCAGTATCCT
GACTTGACATTGCCAGAGTTGAATTCTGTTTCATTGGTTTGGACCATTAG
AGATAGTAGACTTGTAAATTTGCCCTTCAACTTGTTGGTGGAAGGTGATG
TTGTGCTCCTTGGACCAAGTAGGAAATCTCCTGCCACCTGTAGACAAATG
CGAGAAGTCTATCTCCAGCAAACAGAAATTGAAAGGCTTGTTGGAGATAT
TTCCTCAACAATGGCTACTAATTTGTACTAGGGACGGTGCACAGCCAGTG
TTATTAGAATCTGGAGATGTTTTTATGCCCAAATTACAAAGCCCTGCTCA
ACAAAAAACAGTACTGACAATGCATGGACGAGAATTATTCGAAGTTGTGG
AGGCTCCCTTGAAAAATATATTGATGTAAGCTTCAATGCTAATGAATGGT
CTGCAAATGATCAGTATCCTGACTTGACATTGCCAGAGTTGAATTCTGTT
TCATTGGTTTGGACCATTAGAGATAGTAGACTTGTAAATTTGCCCTTCAA
CTTGTTGGTGGAAGGTGATGTTGTGCTCCTTGGACCAAGTAGGAAATCTC
CTGCCACCTGTAGACAAATGCGAGAAGTCTATCTCCAGCAAACAGAAATT
GAAAGGCTTGTTGGAGATATTTCCTCAACAATGGCTACTAATTTGTACTA
GGGACGGTGCACAGCCAGTGTTATTAGAATCTGGAGATGTTTTTATGCCC
AAATTACAAAGCCCTGCTCAACAAAAAACAGTACTGACAATGCATGGACG
AGAATTATTCGAAGTTGTGGAGGCTCCCTTGAAAAATATATTGATGTAAG
CTTCAATGCTAATGAATGGTCTGCAAATGATCAGTATCCTGACTTGACAT
TGCCAGAGTTGAATTCTGTTTCATTGGTTTGGACCATTAGAGATAGTAGA
CTTGTAAATTTGCCCTTCAACTTGTTGGTGGAAGGTGATGTTGTGCTCCT
TGGACCAAGTAGGAAATCTCCTGCCACCTGTAGACAAATGCGAGAAGTCT
ATCTCCAGCAAACAGAAATTGAAAGGCTTGTTGGAGATATTTCCTCAACA
ATGGCTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069470-exon-scaffold_50-1575043694:263002..263220 | TCONS_00069470-exon-scaffold_50-1575043694:263002..263220 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1575043694:262676..262863 | TCONS_00069470-exon-scaffold_50-1575043694:262676..262863 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1575043694:262336..262494 | TCONS_00069470-exon-scaffold_50-1575043694:262336..262494 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1510915933:263002..263220 | TCONS_00069470-exon-scaffold_50-1510915933:263002..263220 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1510915933:262676..262863 | TCONS_00069470-exon-scaffold_50-1510915933:262676..262863 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1510915933:262336..262494 | TCONS_00069470-exon-scaffold_50-1510915933:262336..262494 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1491911889:263002..263220 | TCONS_00069470-exon-scaffold_50-1491911889:263002..263220 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1491911889:262676..262863 | TCONS_00069470-exon-scaffold_50-1491911889:262676..262863 | Clytia hemisphaerica | exon |
| TCONS_00069470-exon-scaffold_50-1491911889:262336..262494 | TCONS_00069470-exon-scaffold_50-1491911889:262336..262494 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:262336..263220 - |
Blast
The following BLAST results are available for this feature:
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