TCONS_00069469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069469
Unique NameTCONS_00069469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069469 ID=TCONS_00069469|Name=TCONS_00069469|organism=Clytia hemisphaerica|type=transcript|length=873bp
TGTTGaagaaatgaaagaatttaTGAAAAGCAACGGTGAGGATGAACGTC
TGTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAG
TCACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGCTTC
CTCATCTAAAACTCCTATCGCCGATGCGAATTTATTTTTGTACATGGTGG
GAAGTATCCTCGATGGTCGGAAGTATTCATCTCGAAGGTCGGAAGTAGCA
TCGCCAGTCGGAAGCATCTCGAACTTAGAAAACATAGTTTACGATGGTCG
TATGTATGGCGATCGTGGTCGGAGATGCTGCATTCGACGTAGAGTAAAAT
TACTTGCAAATGAATAAAGCCGTCGTTTTGTCTGCCGTTGAAAGCAAGAT
TTGGCTGATTCTGCAATAATACGTTTTAACTTCCGACCGTCGAGAGAAGA
TACTTCTGACCATCGAAATTAGATTTTCTAAGTTTAAGATCCGACTTCCG
ACTGCCGATGCTAATTCCGACCGTCGAGATGAGATACTTCCGACCATCGA
GGATACTTTCTACCAATGTGCGAAAAAAATCGCATCGTCGATTATGATAA
TCAAGAATTTGAAAGTTGGAAATTAAAGATGTTTTATTTGTTTAAAGAAA
CTGCCATCATGGGTATCATAAACATTGGTTACTTAACCTTAACGAAAAAG
AGTTGCTGTTCCCTGATGTAAAAGTTTTATAGGGTAACTTTATTGGCCAT
AATAAtgaatgaacaaatttttcggGGAAGACTAGCGattccttgaaaat
tttaagcGAACTTTAAGGTCTGAGTCaaacggccgactttctgccttcta
cctcttgggtacctaatagccgg
Run BLAST on NCBI

transcript from alignment at scaffold_50:258628..262164-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069469 ID=TCONS_00069469|Name=TCONS_00069469|organism=Clytia hemisphaerica|type=transcript|length=3537bp|location=Sequence derived from alignment at scaffold_50:258628..262164- (Clytia hemisphaerica)
TGTTGAAGAAATGAAAGAATTTATGAAAAGCAACGGTGAGGATGAACGTC
TGTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAG
TCACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGTATG
TTTTGACTTTGACGTTCAGTGGATTGCAAGGANGGGACTTGAAAAATAGG
TATGTTTTGACTTTGACGTTCAGTGGATTGCAAGGATTTTTTATAGAATC
TGGAAACATGAAAAGTCAAAGGGCAATCAAGGTGTTTCTATTGTTAAAAA
AAATGATACGCAAGCTTCTTCCTGAAAGCACAACTGTCATAGGGACCATT
CAAAAACTACGTATACGCTCTGAGGGTGAGGGGGGTCACTAGAAGGGGGT
CTATCAAGAATTGTATGTTGGGTATGAATAAAAAGATAAAGTGTTTTTTA
TATAACTTAGCGATACGAAACGATTTAGCGAGTTTCAATTTTACGAAAAG
GGCGAAAATTCGCGAAAGTGAAAGGGAGGGAGGAGCTGACCCTCCGATAT
CATCGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTGTTTACAGGCTTCCTCATCTAAAACTCCTATCGCCG
ATGCGAATTTATTTTTGTACATGGTGGGAAGTATCCTCGATGGTCGGAAG
TATTCATCTCGAAGGTCGGAAGTAGCATCGCCAGTCGGAAGCATCTCGAA
CTTAGAAAACATAGTTTACGATGGTCGTATGTATGGCGATCGTGGTCGGA
GGTATGGTGATCATAACAGCTAGCCTTACTCGCGAGGTCTGTTCATCCGT
ACATCCGTACATGTTTAGTATACATTTCTTTTTTAAACTAGCCTTGGCTT
GGGGCCATCCATATAGTACGTACGCAGTGAAGGGGGGAGAGCAAAAGCGT
ATTGCGTAAGTACTATATGGACGACCTTCCATTTATTACCACCGTCACCC
TTTGCTCGGCACTTTTTTTCTGAGTTTTTAGCAAATTTGTCAGGTCAGAC
TTTAAATCTCCTGATCTAGAAGGTAGTCAGACTGGTTTGGCAGAGGGGTA
GTAAACATCAAATCAATCCACTAGCGGACAGAATTCAGTAAGTCAGGACA
AAATTTGGTGACTTTCAGTTCTAGTGTGGTCGTTGAGTATAACTTACAGG
AAAATAATATAATTTGGCTAAAATTTTGACCCGACCTCCTTTAAAAAACG
ATTATGCCTCAGGAAAAATTTCCCCAAAATCCCACTGGTGGAACACCCTT
TTAAGGGGCAATTTCTATTTTCCCCAGGCAAAATCCCAAGGCCAATTTTT
TTTCGAATTTCAAAATTGATTTTCATGACATATCATATATGCCATTCGAA
AGCTTTCGAAAAAGTATATAGAAGACTTTTAAGCGAGTATAGCCGAATTC
TTAACCTAGCTCAACATATTTTGGCAAAAAAGGTCAATTTTTCGATCAAA
TTGAAAGTCACCGTCAAAATCAAGAAGCTCTCAATAGTGTCATTGTGGGT
TGGTTGCCCCTCCCCCCTTGAGATTTAAAAAATTCTGGTCCCACCCCCCC
CCCCCATTTTAAATCCCCCACCTAGAGTTTGAAAAATTTTCTTTGCCCCA
ATTGAAAAAATTTTGGTAGCCTGGGAGGCCCCGCAATTTCATGTGTTTTT
ACTCAAAATTGAGATTACCTAGAGATTTTCACACGTGCACCTAATCCCCC
CCTCCTTTGGCATTTTTTTCCAAAAAATATTTACGTTCGAATTAGAACTT
AAAAATTCGATTAAGGGCTACCTTTGACTTGGAGTACGAGGAGTAAGTGT
TCTTAGAGTTTCTTTATTTGTTTCTAGAAAATAATAAATTCTTGCTTTGA
ACCTTCTTTGTTCTTTGTCTACATTTTCTCATTGACAGATGCTGCATTCG
ACGTAGAGTAAAATTACTTGCAAATGAATAAAGCCGTCGTTTTGTCTGCC
GTTGAAAGCAAGATTTGGCTGATTCTGCAATAATACGTTTTAACTTCCGA
CCGTCGAGAGAAGATACTTCTGACCATCGAAATTAGATTTTCTAAGTTTA
AGATCCGACTTCCGACTGCCGATGCTAATTCCGACCGTCGAGATGAGATA
CTTCCGACCATCGAGGATACTTTCTACCAATGTGCGAAAAAAATCGCATC
GTCGATTATGATAATCAAGAATTTGAAAGTTGGAAATTAAAGATGTTTTA
TTTGTTTAAAGAAACTGCCATCATGGGTATCATAAACATTGGTTACTTAA
CCTTAACGAAAAAGAGTTGCTGTTCCCTGATGTAAAAGTTTTATAGGGTA
ACTTTATTGGCCATAATAATGAATGAACAAATTTTTCGGGGAAGACTAGC
GATTCCTTGAAAATTTTAAGCGAACTTTAAGGTCTGAGTCAAACGGCCGA
CTTTCTGCCTTCTACCTCTTGGGTACCTAATAGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043294XLOC_043294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069469-exon-scaffold_50-1575043694:262020..262164TCONS_00069469-exon-scaffold_50-1575043694:262020..262164Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1575043694:260314..260492TCONS_00069469-exon-scaffold_50-1575043694:260314..260492Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1575043694:258628..259176TCONS_00069469-exon-scaffold_50-1575043694:258628..259176Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1510915933:262020..262164TCONS_00069469-exon-scaffold_50-1510915933:262020..262164Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1510915933:260314..260492TCONS_00069469-exon-scaffold_50-1510915933:260314..260492Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1510915933:258628..259176TCONS_00069469-exon-scaffold_50-1510915933:258628..259176Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1491911889:262020..262164TCONS_00069469-exon-scaffold_50-1491911889:262020..262164Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1491911889:260314..260492TCONS_00069469-exon-scaffold_50-1491911889:260314..260492Clytia hemisphaericaexon
TCONS_00069469-exon-scaffold_50-1491911889:258628..259176TCONS_00069469-exon-scaffold_50-1491911889:258628..259176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:258628..262164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67412	2.39452	0.854235	0.265922	4.29518	5.40307	6.75665	4.83612	2.69625	4.3075	7.34762	3.73533	2.63602	2.50928	3.52847	2.57734	4.9608	3.74161	3.02209	0.000257946	1.2285	1.09466	2.30129	1.97631	1.03397e-06	7.41454	3.01542	3.11258	1.9041	1.6386
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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