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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069468 ID=TCONS_00069468|Name=TCONS_00069468|organism=Clytia hemisphaerica|type=transcript|length=2009bp
GTTGaagaaatgaaagaatttaTGAAAAGCAACGGTGAGGATGAACGTCT
GTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAGT
CACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGCTTCC
TCATCTAAAACTCCTATCGCCGATGCGAATTTATTTTTGTACATGGTGGG
AAGTATCCTCGATGGTCGGAAGTATTCATCTCGAAGGTCGGAAGTAGCAT
CGCCAGTCGGAAGCATCTCGAACTTAGAAAACATAGTTTACGATGGTCGT
ATGTATGGCGATCGTGGTCGGAGGTATGGTGATCATAACAGCTAGCCTTA
CTCGCGAGGTCTGTTCATCCGTACATCCGTACATGTTTAGTatacatttc
ttttttaaactAGCCTTGGcttggggccatccatatagtacgtacgcagt
gaaggggggagagcaAAAGCGTATTGCGTAAGTACTATATGGACGACCTT
CCATTTATTACCACCGTCACCCTTTGCTCGGCACTTTTTTTCTGAGTTTT
TAGCAAATTTGTCAGGTCAGACTTTaaatctcctgatctagaaggtaGTC
AGACTGGTTTGGCAGAGGGGTAGTAAACATCAAATCAATCCACTAGCGGA
CAGAATTCAGTAAGTCAGGACAAAATTTGGTGACTTTCAGTTCTAGTGTG
GTCGTTGAGTATAACTTACaggaaaataatataatttggctaaaattttg
acCCGACCTCCTTTAAAAAACgattatgcctcaggaaaaatttccccaaa
atcccactggtggaacaccCTTTTAAggggcaatttctattttccccagg
caaaatcccaaggccaattttttttcgaatttcaaaattgattttcatGA
CATATCATATATGCCATTCGAAAGCTTTCGAAAAagtatatagaagactt
ttaagcgaGTATAGCCGAATTCTTAACCTAGCTCAAcatattttggcaaa
aaaggtcaatttttcgatcaaattgaaagtcaccgtcaaaatCAAGAAGC
TCTCAATAGTGTCATTGTGGGTTGGTTGCCCCTCCCCCCTtgagatttaa
aaaattctggtcccaccccccccccccattttaaaTCCCCCACCtagagt
ttgaaaaattttctttgccccaattgaaaaaattttggtaGCCTGGGAGG
CCCCGCAATTTCATGTGTTTTTACTCAAAATTGAGATTACCTAGAGATTT
TCACACGTGCACCTAATCCCCCCCTCCTTTggcatttttttccaaaaaat
atttacgTTCGAATTAGAACTTAAAAATTCGATTAAGGGCTACCTTTGAC
TTGGAGTACGAGGAGTAAGTGTTCTTAGAGTTTCTTTATTTGTTTCTAGA
AAATAATAAATTCTTGCTTTGAACCTTCTTTGTTCTTTGTCTACATTTTC
TCATTGACAGATGCTGCATTCGACGTAGAGTAAAATTACTTGCAAATGAA
TAAAGCCGTCGTTTTGTCTGCCGTTGAAAGCAAGATTTGGCTGATTCTGC
AATAATACGTTTTAACTTCCGACCGTCGAGAGAAGATACTTCTGACCATC
GAAATTAGATTTTCTAAGTTTAAGATCCGACTTCCGACTGCCGATGCTAA
TTCCGACCGTCGAGATGAGATACTTCCGACCATCGAGGATACTTTCTACC
AATGTGCGAAAAAAATCGCATCGTCGATTATGATAATCAAGAATTTGAAA
GTTGGAAATTAAAGATGTTTTATTTGTTTAAAGAAACTGCCATCATGGGT
ATCATAAACATTGGTTACTTAACCTTAACGAAAAAGAGTTGCTGTTCCCT
GATGTAAAAGTTTTATAGGGTAACTTTATTGGCCATAATAAtgaatgaac
aaatttttcggGGAAGACTAGCGattccttgaaaattttaagcGAACTTT
AAGGTCTGAGTCaaacggccgactttctgccttctacctcttgggtacct
aatagccgg Run BLAST on NCBI transcript from alignment at scaffold_50:258628..262163- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069468 ID=TCONS_00069468|Name=TCONS_00069468|organism=Clytia hemisphaerica|type=transcript|length=3536bp|location=Sequence derived from alignment at scaffold_50:258628..262163- (Clytia hemisphaerica)
GTTGAAGAAATGAAAGAATTTATGAAAAGCAACGGTGAGGATGAACGTCT
GTTTGGGAAGGTAAAGATACGTATCAATAATGCAAGATCAGCAGTAAAGT
CACGTGCTGCAAAACGAGCTAAAGCGATGGGACTTGAAAAATAGGTATGT
TTTGACTTTGACGTTCAGTGGATTGCAAGGANGGGACTTGAAAAATAGGT
ATGTTTTGACTTTGACGTTCAGTGGATTGCAAGGATTTTTTATAGAATCT
GGAAACATGAAAAGTCAAAGGGCAATCAAGGTGTTTCTATTGTTAAAAAA
AATGATACGCAAGCTTCTTCCTGAAAGCACAACTGTCATAGGGACCATTC
AAAAACTACGTATACGCTCTGAGGGTGAGGGGGGTCACTAGAAGGGGGTC
TATCAAGAATTGTATGTTGGGTATGAATAAAAAGATAAAGTGTTTTTTAT
ATAACTTAGCGATACGAAACGATTTAGCGAGTTTCAATTTTACGAAAAGG
GCGAAAATTCGCGAAAGTGAAAGGGAGGGAGGAGCTGACCCTCCGATATC
ATCGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGTTTACAGGCTTCCTCATCTAAAACTCCTATCGCCGA
TGCGAATTTATTTTTGTACATGGTGGGAAGTATCCTCGATGGTCGGAAGT
ATTCATCTCGAAGGTCGGAAGTAGCATCGCCAGTCGGAAGCATCTCGAAC
TTAGAAAACATAGTTTACGATGGTCGTATGTATGGCGATCGTGGTCGGAG
GTATGGTGATCATAACAGCTAGCCTTACTCGCGAGGTCTGTTCATCCGTA
CATCCGTACATGTTTAGTATACATTTCTTTTTTAAACTAGCCTTGGCTTG
GGGCCATCCATATAGTACGTACGCAGTGAAGGGGGGAGAGCAAAAGCGTA
TTGCGTAAGTACTATATGGACGACCTTCCATTTATTACCACCGTCACCCT
TTGCTCGGCACTTTTTTTCTGAGTTTTTAGCAAATTTGTCAGGTCAGACT
TTAAATCTCCTGATCTAGAAGGTAGTCAGACTGGTTTGGCAGAGGGGTAG
TAAACATCAAATCAATCCACTAGCGGACAGAATTCAGTAAGTCAGGACAA
AATTTGGTGACTTTCAGTTCTAGTGTGGTCGTTGAGTATAACTTACAGGA
AAATAATATAATTTGGCTAAAATTTTGACCCGACCTCCTTTAAAAAACGA
TTATGCCTCAGGAAAAATTTCCCCAAAATCCCACTGGTGGAACACCCTTT
TAAGGGGCAATTTCTATTTTCCCCAGGCAAAATCCCAAGGCCAATTTTTT
TTCGAATTTCAAAATTGATTTTCATGACATATCATATATGCCATTCGAAA
GCTTTCGAAAAAGTATATAGAAGACTTTTAAGCGAGTATAGCCGAATTCT
TAACCTAGCTCAACATATTTTGGCAAAAAAGGTCAATTTTTCGATCAAAT
TGAAAGTCACCGTCAAAATCAAGAAGCTCTCAATAGTGTCATTGTGGGTT
GGTTGCCCCTCCCCCCTTGAGATTTAAAAAATTCTGGTCCCACCCCCCCC
CCCCATTTTAAATCCCCCACCTAGAGTTTGAAAAATTTTCTTTGCCCCAA
TTGAAAAAATTTTGGTAGCCTGGGAGGCCCCGCAATTTCATGTGTTTTTA
CTCAAAATTGAGATTACCTAGAGATTTTCACACGTGCACCTAATCCCCCC
CTCCTTTGGCATTTTTTTCCAAAAAATATTTACGTTCGAATTAGAACTTA
AAAATTCGATTAAGGGCTACCTTTGACTTGGAGTACGAGGAGTAAGTGTT
CTTAGAGTTTCTTTATTTGTTTCTAGAAAATAATAAATTCTTGCTTTGAA
CCTTCTTTGTTCTTTGTCTACATTTTCTCATTGACAGATGCTGCATTCGA
CGTAGAGTAAAATTACTTGCAAATGAATAAAGCCGTCGTTTTGTCTGCCG
TTGAAAGCAAGATTTGGCTGATTCTGCAATAATACGTTTTAACTTCCGAC
CGTCGAGAGAAGATACTTCTGACCATCGAAATTAGATTTTCTAAGTTTAA
GATCCGACTTCCGACTGCCGATGCTAATTCCGACCGTCGAGATGAGATAC
TTCCGACCATCGAGGATACTTTCTACCAATGTGCGAAAAAAATCGCATCG
TCGATTATGATAATCAAGAATTTGAAAGTTGGAAATTAAAGATGTTTTAT
TTGTTTAAAGAAACTGCCATCATGGGTATCATAAACATTGGTTACTTAAC
CTTAACGAAAAAGAGTTGCTGTTCCCTGATGTAAAAGTTTTATAGGGTAA
CTTTATTGGCCATAATAATGAATGAACAAATTTTTCGGGGAAGACTAGCG
ATTCCTTGAAAATTTTAAGCGAACTTTAAGGTCTGAGTCAAACGGCCGAC
TTTCTGCCTTCTACCTCTTGGGTACCTAATAGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069468-exon-scaffold_50-1575043694:262020..262163 | TCONS_00069468-exon-scaffold_50-1575043694:262020..262163 | Clytia hemisphaerica | exon |
| TCONS_00069468-exon-scaffold_50-1575043694:258628..260492 | TCONS_00069468-exon-scaffold_50-1575043694:258628..260492 | Clytia hemisphaerica | exon |
| TCONS_00069468-exon-scaffold_50-1510915933:262020..262163 | TCONS_00069468-exon-scaffold_50-1510915933:262020..262163 | Clytia hemisphaerica | exon |
| TCONS_00069468-exon-scaffold_50-1510915933:258628..260492 | TCONS_00069468-exon-scaffold_50-1510915933:258628..260492 | Clytia hemisphaerica | exon |
| TCONS_00069468-exon-scaffold_50-1491911889:262020..262163 | TCONS_00069468-exon-scaffold_50-1491911889:262020..262163 | Clytia hemisphaerica | exon |
| TCONS_00069468-exon-scaffold_50-1491911889:258628..260492 | TCONS_00069468-exon-scaffold_50-1491911889:258628..260492 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:258628..262163 - |
Blast
The following BLAST results are available for this feature:
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