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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069459 ID=TCONS_00069459|Name=TCONS_00069459|organism=Clytia hemisphaerica|type=transcript|length=1794bpRun BLAST on NCBI protein sequence of TCONS_00069459-protein >TCONS_00069459-protein ID=TCONS_00069459-protein|Name=TCONS_00069459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp MESGWMFPATYKDWQDQTYQKNNKNTSPINLDPNEELSNDLLYSQPMIPERun BLAST on NCBI transcript from alignment at scaffold_50:146263..184883- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069459 ID=TCONS_00069459|Name=TCONS_00069459|organism=Clytia hemisphaerica|type=transcript|length=38621bp|location=Sequence derived from alignment at scaffold_50:146263..184883- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_50:146263..184883- >TCONS_00069459 ID=TCONS_00069459|Name=TCONS_00069459|organism=Clytia hemisphaerica|type=CDS|length=21756bp|location=Sequence derived from alignment at scaffold_50:146263..184883- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069459 vs. Swiss-Prot (Human)
Match: MKNK2 (MAP kinase-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=MKNK2 PE=1 SV=3) HSP 1 Score: 354.755 bits (909), Expect = 5.323e-115 Identity = 195/403 (48.39%), Postives = 264/403 (65.51%), Query Frame = 3
Query: 315 DLLYSQPM-IPENEXXXXXXXXXXXDSTQPTTFLDKYTLYPEVLGQGANSLVTVAEEKSSQKSYAVKIIEKTEGYDRIRVLREIDLLHFLSECPNILKLRDSYEDSTRFYLVFERMEGGPLLKHIEQKTHFTEKEASLVVKDIAAALKFLHDKGIAHRDLKPDNILCVNENQIVPVVICDFNLASGISMIGSA---TTPELYTPVGSAEYMAPEIVDAFVGDAPAYDKRCDLWSLGVILFIMLSGKPPFEGNCNESCDWQNGGSCRTCQSTLWHSILDANFTFPPTEWENVSTEAKDLISHLLVKEASKRYSVEDVLNHPWLL-MASNNFLNTPDVLLSEGVSHHLSTVTSEAVAYRRIISERQNSQDEEEQSNHG--IISRWSTPPKFGLSPPGNSRLAKRR 1502
D+ SQP+ IP+ +K+ KKKK+ R + F D Y L +VLG+GA++ V + + YAVKIIEK G+ R RV RE+++L+ N+L+L + +E+ RFYLVFE+M GG +L HI ++ HF E EAS+VV+D+A+AL FLH+KGIAHRDLKP+NILC + NQ+ PV ICDF+L SGI + G +TPEL TP GSAEYMAPE+V+AF +A YDKRCDLWSLGVIL+I+LSG PPF G C C W G +C CQ+ L+ SI + + FP +W ++S AKDLIS LLV++A +R S VL HPW+ A N L TP VL + L++ +EA+A R +++ EEE + G ++ R +T LSPP S+LA+RR
Sbjct: 47 DMPASQPIDIPDAKKRGKKKKRGRATDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPENTLPTPMVLQRNSCAKDLTSFAAEAIAMNRQLAQHDEDLAEEEAAGQGQPVLVR-ATSRCLQLSPPSQSKLAQRR 448 The following BLAST results are available for this feature:
BLAST of TCONS_00069459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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